LOC110496203 (LOC106588426)


Basic Information

Item Value
gene id LOC110496203
gene name LOC106588426
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39308819 ~ 39327038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571968.2
ATTTACATTTGgaacaacttagtatGCAGACCATAAAGTGTGTGGTAGTGGGTGACGGTGCAGTGGGAAAGACCTGCCTGTTGATCTCCTACACCACCAACAAGTTCCCCTCGGAATACGTCCCCACGGTGTTTGATAACTATGCAGTGACAGTGATGATCGGAGGGGAGCCCTACACTCTGGGGCTGTTCGATACAGCAGGTCAGGAGGACTATGACAGACTGCGACCACTCAGCTACCCTCAGACAGATGTCTTCCTGGTGTGCTTCTCTGTCGTATCACCTTCCTCTTTTGAGAACGTCCGTGAGAAGTGGGTCCCAGAGATCTCCCACCACTGTCCGCGTACACCCTTCCTGCTGGTGGGCACCCAGATGGACCTGAGGGACGACAGCAACACAGTGGAGAAGCTGGCTAAGAACAAGCAGCGGCCCCTGGCCCCTGAGAGCGGAGACAAGCTGTGCCGGGACCTCCGGGCCGTCAAATACGTTGAGTGCTCCGCCCtcacccagcgagGTCTGAAGAACGTGTTTGATGAGGCCATCTTGGCCGCGCTGGAGCCGCCAGAGACCAAGCCCAAGAAACGCTGCGCACTCttataaaatattttaaattgggCCAAAGAgccaggagaaagagacaggcgGACACGGAGAACAGATAAAGCTGGGAAGGGTGtaatgggagggagaaagagaggacgaGTGAGACATTTGTTTAATAGTGCCTTCAGCGATACAGGTGGGGAGGGGCGACGTTGCGTGGATAGGTAACAGAGACCTAGAAATACATCCTAATATGTAATAGAATGTATATCTATGTTTCTTGTAACAAGCTGATCAATTCTCTTCCAGACCAGAAAAGTCCTTCTTAAAAGGAGACCGACAGAGCAATATAGGGAAGAGACAAGGTTTTGAAACCTCTATTGCCTTAAAGTTACAGTACAAACAAAATAAGTTAGACAAAAGGAGGAAGAGACCGTGTGGAGTTTATTTTGTGTTTGATGATACTTAAAAACTGACTGGAAAAATGTGCTTAATCTGTGCAATCTAGACGCACACAGGCGCCAGTGCTTTACTCCCTTCAACCCACAACTGAACTCTTCTTCTTCACACACTATCTGACATCACTGCTCCCATGGAAACTACAAGCGCTTTTTCTTCCTCTTGGGATTTCACTGCCCCCTAACATGAACTGAATTTCCACTTGCTTCCTTTTTTTGACATTTTATTGTTTTAGAGATGATGGTATATTAATGACGATAATAAGAGTATTATTTTTTTGCCCCTTTATTTCCGGGGACACCCCTAGTGGTTAGCGGTTTGGAcaattgttttttaaaaatgtgttttaaaaaaaaaaaattatggttGTGTGCCAATGTGTTGAGTGTCACTGGTTTCATTTGACATAACAATCATAATATGCCTCTAATGACTACGTAGCTGGTTGTGATGTCAGTAGTAATAACAGCAAATAGCAATAATGGTTATGAGTGACAGTAATAGCTGTATTGACGCATCATCCAGTtgtttgaaataaataaaaaataacttgaAAATGGT
>XM_021571967.2
AGCGAAACTTTTGCAATCTAAGTCTGATTTGAGATAAATCGTGAAATGTATATTATGTAGAAAGAGTACATATTTACATTTGgaacaacttagtgtatgtatttatttttaaacaacggcattagcagtTGACACCTAGCTAACCAGCTTGCTAAGAAGTGTTGTTAGCTTGTTAGCTGCTAAGAACGTTAGCtatcttttgtttgttgtttttaacTAGTTAACGTTACGTGCTATGTGTCTACATAGCAGCTTGGGAAAATAGCATTCGTTTTTGTTTACTTTTActtcattgtttttttttaaatgacatggcACTGAAAATGATTGAGGCGAAACGGTTTTACAGGCCTCGTCTGggatttagctagctaacaagctaacgttagcctagCGACCTATGATAGatGCAGACCATAAAGTGTGTGGTAGTGGGTGACGGTGCAGTGGGAAAGACCTGCCTGTTGATCTCCTACACCACCAACAAGTTCCCCTCGGAATACGTCCCCACGGTGTTTGATAACTATGCAGTGACAGTGATGATCGGAGGGGAGCCCTACACTCTGGGGCTGTTCGATACAGCAGGTCAGGAGGACTATGACAGACTGCGACCACTCAGCTACCCTCAGACAGATGTCTTCCTGGTGTGCTTCTCTGTCGTATCACCTTCCTCTTTTGAGAACGTCCGTGAGAAGTGGGTCCCAGAGATCTCCCACCACTGTCCGCGTACACCCTTCCTGCTGGTGGGCACCCAGATGGACCTGAGGGACGACAGCAACACAGTGGAGAAGCTGGCTAAGAACAAGCAGCGGCCCCTGGCCCCTGAGAGCGGAGACAAGCTGTGCCGGGACCTCCGGGCCGTCAAATACGTTGAGTGCTCCGCCCtcacccagcgagGTCTGAAGAACGTGTTTGATGAGGCCATCTTGGCCGCGCTGGAGCCGCCAGAGACCAAGCCCAAGAAACGCTGCGCACTCttataaaatattttaaattgggCCAAAGAgccaggagaaagagacaggcgGACACGGAGAACAGATAAAGCTGGGAAGGGTGtaatgggagggagaaagagaggacgaGTGAGACATTTGTTTAATAGTGCCTTCAGCGATACAGGTGGGGAGGGGCGACGTTGCGTGGATAGGTAACAGAGACCTAGAAATACATCCTAATATGTAATAGAATGTATATCTATGTTTCTTGTAACAAGCTGATCAATTCTCTTCCAGACCAGAAAAGTCCTTCTTAAAAGGAGACCGACAGAGCAATATAGGGAAGAGACAAGGTTTTGAAACCTCTATTGCCTTAAAGTTACAGTACAAACAAAATAAGTTAGACAAAAGGAGGAAGAGACCGTGTGGAGTTTATTTTGTGTTTGATGATACTTAAAAACTGACTGGAAAAATGTGCTTAATCTGTGCAATCTAGACGCACACAGGCGCCAGTGCTTTACTCCCTTCAACCCACAACTGAACTCTTCTTCTTCACACACTATCTGACATCACTGCTCCCATGGAAACTACAAGCGCTTTTTCTTCCTCTTGGGATTTCACTGCCCCCTAACATGAACTGAATTTCCACTTGCTTCCTTTTTTTGACATTTTATTGTTTTAGAGATGATGGTATATTAATGACGATAATAAGAGTATTATTTTTTTGCCCCTTTATTTCCGGGGACACCCCTAGTGGTTAGCGGTTTGGAcaattgttttttaaaaatgtgttttaaaaaaaaaaaattatggttGTGTGCCAATGTGTTGAGTGTCACTGGTTTCATTTGACATAACAATCATAATATGCCTCTAATGACTACGTAGCTGGTTGTGATGTCAGTAGTAATAACAGCAAATAGCAATAATGGTTATGAGTGACAGTAATAGCTGTATTGACGCATCATCCAGTtgtttgaaataaataaaaaataacttgaAAATGGT
>XM_021571966.2
CTCTCTCTTTGGCTCTCTAGATTTTATTATATAACTAAACGGGAGGGTAGATAAAATGTAGAAGATTTACTCACTAAATGCCATATGATGAGCCACAGATGAACCTCAAGAATATTGGAGGCTGTGTTGAATGAAACGCCTCCTTCACAGTGATCATGTGTATGAACCCCGGATGTGACAACGCCTGTGTTGGATTGATACGatGCAGACCATAAAGTGTGTGGTAGTGGGTGACGGTGCAGTGGGAAAGACCTGCCTGTTGATCTCCTACACCACCAACAAGTTCCCCTCGGAATACGTCCCCACGGTGTTTGATAACTATGCAGTGACAGTGATGATCGGAGGGGAGCCCTACACTCTGGGGCTGTTCGATACAGCAGGTCAGGAGGACTATGACAGACTGCGACCACTCAGCTACCCTCAGACAGATGTCTTCCTGGTGTGCTTCTCTGTCGTATCACCTTCCTCTTTTGAGAACGTCCGTGAGAAGTGGGTCCCAGAGATCTCCCACCACTGTCCGCGTACACCCTTCCTGCTGGTGGGCACCCAGATGGACCTGAGGGACGACAGCAACACAGTGGAGAAGCTGGCTAAGAACAAGCAGCGGCCCCTGGCCCCTGAGAGCGGAGACAAGCTGTGCCGGGACCTCCGGGCCGTCAAATACGTTGAGTGCTCCGCCCtcacccagcgagGTCTGAAGAACGTGTTTGATGAGGCCATCTTGGCCGCGCTGGAGCCGCCAGAGACCAAGCCCAAGAAACGCTGCGCACTCttataaaatattttaaattgggCCAAAGAgccaggagaaagagacaggcgGACACGGAGAACAGATAAAGCTGGGAAGGGTGtaatgggagggagaaagagaggacgaGTGAGACATTTGTTTAATAGTGCCTTCAGCGATACAGGTGGGGAGGGGCGACGTTGCGTGGATAGGTAACAGAGACCTAGAAATACATCCTAATATGTAATAGAATGTATATCTATGTTTCTTGTAACAAGCTGATCAATTCTCTTCCAGACCAGAAAAGTCCTTCTTAAAAGGAGACCGACAGAGCAATATAGGGAAGAGACAAGGTTTTGAAACCTCTATTGCCTTAAAGTTACAGTACAAACAAAATAAGTTAGACAAAAGGAGGAAGAGACCGTGTGGAGTTTATTTTGTGTTTGATGATACTTAAAAACTGACTGGAAAAATGTGCTTAATCTGTGCAATCTAGACGCACACAGGCGCCAGTGCTTTACTCCCTTCAACCCACAACTGAACTCTTCTTCTTCACACACTATCTGACATCACTGCTCCCATGGAAACTACAAGCGCTTTTTCTTCCTCTTGGGATTTCACTGCCCCCTAACATGAACTGAATTTCCACTTGCTTCCTTTTTTTGACATTTTATTGTTTTAGAGATGATGGTATATTAATGACGATAATAAGAGTATTATTTTTTTGCCCCTTTATTTCCGGGGACACCCCTAGTGGTTAGCGGTTTGGAcaattgttttttaaaaatgtgttttaaaaaaaaaaaattatggttGTGTGCCAATGTGTTGAGTGTCACTGGTTTCATTTGACATAACAATCATAATATGCCTCTAATGACTACGTAGCTGGTTGTGATGTCAGTAGTAATAACAGCAAATAGCAATAATGGTTATGAGTGACAGTAATAGCTGTATTGACGCATCATCCAGTtgtttgaaataaataaaaaataacttgaAAATGG
>XM_021571969.2
CTCTCTCTTTGGCTCTCTAGATTTTATTATATAACTAAACGGGAGGGTAGATAAAATGTAGAAGATTTACTCACTAAATGCCATATGATGAGCCACAGATGAACCTCAAGAATATTGGAGGCTGTGTTGAATGAAACGCCTCCTTCACAGTGATCATGTGTATGAACCCCGGATGTGACAACGCCTGTGTTGGATTGATACGatGCAGACCATAAAGTGTGTGGTAGTGGGTGACGGTGCAGTGGGAAAGACCTGCCTGTTGATCTCCTACACCACCAACAAGTTCCCCTCGGAATACGTCCCCACGGTGTTTGATAACTATGCAGTGACAGTGATGATCGGAGGGGAGCCCTACACTCTGGGGCTGTTCGATACAGCAGGTCAGGAGGACTATGACAGACTGCGACCACTCAGCTACCCTCAGACAGATGTCTTCCTGGTGTGCTTCTCTGTCGTATCACCTTCCTCTTTTGAGAACGTCCGTGAGAAGTGGGTCCCAGAGATCTCCCACCACTGTCCGCGTACACCCTTCCTGCTGGTGGGCACCCAGATGGACCTGAGGGACGACAGCAACACAGTGGAGAAGCTGGCTAAGAACAAGCAGCGGCCCCTGGCCCCTGAGAGCGGAGACAAGCTGTGCCGGGACCTCCGGGCCGTCAAATACcgagGTCTGAAGAACGTGTTTGATGAGGCCATCTTGGCCGCGCTGGAGCCGCCAGAGACCAAGCCCAAGAAACGCTGCGCACTCttataaaatattttaaattgggCCAAAGAgccaggagaaagagacaggcgGACACGGAGAACAGATAAAGCTGGGAAGGGTGtaatgggagggagaaagagaggacgaGTGAGACATTTGTTTAATAGTGCCTTCAGCGATACAGGTGGGGAGGGGCGACGTTGCGTGGATAGGTAACAGAGACCTAGAAATACATCCTAATATGTAATAGAATGTATATCTATGTTTCTTGTAACAAGCTGATCAATTCTCTTCCAGACCAGAAAAGTCCTTCTTAAAAGGAGACCGACAGAGCAATATAGGGAAGAGACAAGGTTTTGAAACCTCTATTGCCTTAAAGTTACAGTACAAACAAAATAAGTTAGACAAAAGGAGGAAGAGACCGTGTGGAGTTTATTTTGTGTTTGATGATACTTAAAAACTGACTGGAAAAATGTGCTTAATCTGTGCAATCTAGACGCACACAGGCGCCAGTGCTTTACTCCCTTCAACCCACAACTGAACTCTTCTTCTTCACACACTATCTGACATCACTGCTCCCATGGAAACTACAAGCGCTTTTTCTTCCTCTTGGGATTTCACTGCCCCCTAACATGAACTGAATTTCCACTTGCTTCCTTTTTTTGACATTTTATTGTTTTAGAGATGATGGTATATTAATGACGATAATAAGAGTATTATTTTTTTGCCCCTTTATTTCCGGGGACACCCCTAGTGGTTAGCGGTTTGGAcaattgttttttaaaaatgtgttttaaaaaaaaaaaattatggttGTGTGCCAATGTGTTGAGTGTCACTGGTTTCATTTGACATAACAATCATAATATGCCTCTAATGACTACGTAGCTGGTTGTGATGTCAGTAGTAATAACAGCAAATAGCAATAATGGTTATGAGTGACAGTAATAGCTGTATTGACGCATCATCCAGTtgtttgaaataaataaaaaataacttgaAAATGG

Function

NR:

description
cell division control protein 42 homolog isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571968.2 False 1562 mRNA 0.45 6 39308819 39326763
XM_021571967.2 False 1946 mRNA 0.43 6 39308819 39326834
XM_021571966.2 False 1740 mRNA 0.45 6 39308820 39327038
XM_021571969.2 True 1716 mRNA 0.45 6 39308820 39327038

Neighbor

gene id symbol gene type direction distance location
LOC110496200 LOC106588422 coding downstream 12878 39269584 ~ 39295941 (-)
LOC110496198 LOC106588427 coding downstream 46363 39247198 ~ 39262456 (-)
LOC110496197 LOC106588427 coding downstream 63764 39233121 ~ 39245055 (-)
LOC110496190 LOC106588434 coding downstream 162224 39116591 ~ 39146595 (-)
LOC110496188 LOC106588437 coding downstream 227096 39066864 ~ 39081723 (-)
LOC110496202 LOC106569985 coding upstream 31360 39358398 ~ 39372505 (-)
LOC110496204 LOC106588420 coding upstream 49405 39376443 ~ 39383490 (-)
LOC110496205 LOC100136448 coding upstream 62177 39389215 ~ 39413466 (-)
LOC110496206 LOC106588419 coding upstream 106747 39433785 ~ 39452164 (-)
LOC110496815 LOC106588418 coding upstream 140388 39467426 ~ 39566572 (-)
G1547041 NA non-coding downstream 40001 39268616 ~ 39268818 (-)
G1547039 NA non-coding downstream 44565 39263873 ~ 39264254 (-)
G1547038 NA non-coding downstream 45640 39262921 ~ 39263179 (-)
G1546933 NA non-coding downstream 75739 39232559 ~ 39233080 (-)
G1547052 NA non-coding upstream 47538 39374576 ~ 39384675 (-)
G1547103 NA non-coding upstream 86887 39413925 ~ 39414131 (-)
G1547104 NA non-coding upstream 87135 39414173 ~ 39414433 (-)
G1547107 NA non-coding upstream 89512 39416550 ~ 39416805 (-)
G1547131 NA non-coding upstream 126250 39453288 ~ 39453517 (-)
G1546396 LOC106588446 other downstream 521018 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 535135 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 632790 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 745501 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1094770 38165250 ~ 38214049 (-)
LOC110496208 LOC106588417 other upstream 298737 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 315817 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1058932 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1313137 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1578649 40902519 ~ 40908744 (-)

Expression


Co-expression Network