XLOC_003427 (csf1a)


Basic Information

Item Value
gene id XLOC_003427
gene name csf1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23265157 ~ 23297192 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006699
AGACAGAAACATTCACCCTCTGAAGGTGGCACGTCTAAACTTTCCACATGCAGATCCCTTTGCATCAGTATCTGGACGCCTGAAGCCCACAGAGGACGGATACTGACTTCATTAGGAACAAACGCAAGACAACAAAACTAATCCAATGAATCTACATGTGGACTTTATTGCTTTCTATTTGTTCAGGTCAgccagatgaacacacacataacaGCCCACAAAGCCAAGGTAAGGCATCAGTGCTTCATCCTTGTCCTGTGCTTTCATCTGGTCTATGCTGGTGTGCCAGGTCCATGTAAGCACTCTGTCACCCAGGACCATCTACTCAATTTAAGACGTCTGATTAAAAACCAGCTGCAAAATGGTTGTTCAATAACCTACACCTTCACAGAGCGTCAGAATCTGAGTGTTGTATGTTATGTTAAAGCGGCATTCCCTCACATACTGGAGCTACTCAACACCCATTTCAGATATGCAAAGGATTCCGACAATTATCGTTATTCTAATTCTCTGAAGATCTTAATCTACAACATTTACTCACAGAGATGCATCCCTTCAATCAATGAGGAGATTGAGGACAGTCCAACGAAGTTCGTAAAAATCCACGTGACTGTGCCCAGAGCAGCTTTGGAGAAAGCTGAGGAAGTGATTCGCATGTATATGAGTCTGATGACTCAGAGTGACACGTCTGTGGACTGGAACTGTGAGGAGGAGTACACAGAGGATTACCCGGAATCCACTACTGAACCCCTCATCCAAACAGCAGGTAGCTCAGAGTGCCCCTGCATTTGTCCAACAGTGAGCATTGGATCATCTAAAGCATCTTCATCCTCGAGCCATTGGAATATTTACCTGAAATCTACAACATCCTCACAGAGATCTTTCTCTTCACCTGTCACAACTTTACCAGCTGGTAATGAGAGAACTAAACAATTACAGTCTTTTGTTTCAGTAACAACACAAGGAGATTCATCCAGCTTCTTCTTTGGAAGTACTCCAAGCTTACCAGAAGAAAACACAGAGTTGGACCTAATGCCATCATCAGATGTTTTCCCATCCTTAACAAATATTAGGGATGTATTTCCAAAAACAATTGACTCATCTGTTCAGTCTATTGCATCTGGCCCATATCAGACAAACACAAGAGATAATATCCAGGTCGGTGTTGAGAGGAGCACTCCCCTTTTACTTGCCAAGAGGTCTTTGGATTCCAAAAACCAAGAAGGACCATCCAGCTCCAGTGTGGGATTATCCCACAGCTGGCTTACTGCAACAACTGAGCcaacacataaatacataaagagcacAGAGATACAAGGAAAATCTTTCCAAACACTTAAAATAAGTGAACAAGTTGTACCAGTCGGAACCACAGCTGTGTCTTCATTGAAAGAAGCGGCACATTCATCAGACAGTCTGACCTCTCTTGAAGAACAGCGTGGTCATCTAAACACCCCTCCTGAAACTTTCCAAGCATACACCCAGAGTCCGATGAGGGTGCCAAGGAATTTCATTAGAACCATCCATGAAATGGAAATCAGCAAAGACCACAGATCCCTGGAGATAAAGGACCAGACTGACCCAGACGGAGATGTACACACAAGCTCTGCCGCAGAACAATCCAGCAGCACAATCACCTCTTTCGGCATCGTGCTCATAATTGCATTAGTATGCAGTGGACTTCTACTCATAACTGTTCTATTTTACAGACAGCAAAAAGTAAGTGACAAACAATGCATTTTTGGCCTGTTGAAAAGACCCACTGGTCTGGCCTAAGAAGCCTGCTGGGACCAGTagccaaaaacatgtgctggttATTAGTGCCGGGGGTCTTTTCAGCAGGGAGTTCCAAGTGAAACAGAAAAACCAACATTCCAACATGAAAGAAAGACacatcaagaagaaaaaaaaaaaccaggtGATGgagttcattatttatttaaagcaaatcATAAATTGAGAGACACAATATCAGAAGGAGGCTGTATTTCATTCTGTTTAGGAACTATGTGTGTTTAAGGGAATCTTTTATTGTTCCAACGAAAATAAAAGTGGTCCATTGAtagaaatctgaaaatattttaagcTTTCTTGCACAAACTAAACTCGACAGATCTATGGCAGTTCAGCCATTCATTGTTCTTGACTTGTTATTCAAACATACCAAAATATGTggagtgtatataaataaatatatgcttaTATATACTGAATATACAGGACAAGTGGAATGAAGCCATATCCTAAGTGTCGTCTTTATGTCAGAAGCAAGTATTTAATCAAATGATTTGCTTGGCTCATTCTGATATAAGGAATCTAACAGCAATATTTTGTGCACTACAAGGAAAAATGAATAAAGGAGCCGCTCATGCTGGTGTTTTATTGAACAGGCAATATTAACAGTGTCTTTGTCATTAAAATTACCCAATTACACTAAAGCA

Function

symbol description
csf1a Predicted to enable cytokine activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in integument and iridophore. Human ortholog(s) of this gene implicated in interstitial cystitis. Orthologous to human CSF1 (colony stimulating factor 1).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-107 Predicted to enable cytokine activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in integument and iridophore. Human ortholog(s) of this gene implicated in interstitial cystitis. Orthologous to human CSF1 (colony stimulating factor 1).

Ensembl:

ensembl_id ENSDARG00000075343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006699 True 2441 mRNA 0.41 7 23265157 23297192

Neighbor

gene id symbol gene type direction distance location
XLOC_003426 NA coding upstream 337969 22920469 ~ 22927188 (+)
XLOC_003425 CU861893.1 coding upstream 551026 22714015 ~ 22714131 (+)
XLOC_003424 si:ch211-86h15.1 coding upstream 634768 22623284 ~ 22630389 (+)
XLOC_003423 BX537143.1 coding upstream 665564 22596726 ~ 22599593 (+)
XLOC_003422 ppfia4 coding upstream 680705 22374419 ~ 22584452 (+)
XLOC_003428 BX571675.1 coding downstream 100078 23397270 ~ 23397385 (+)
XLOC_003429 si:ch73-21d24.1 coding downstream 272677 23569869 ~ 23571593 (+)
XLOC_003430 NA coding downstream 297157 23594349 ~ 23597671 (+)
XLOC_003431 nfasca coding downstream 407218 23704410 ~ 23884805 (+)
XLOC_003432 NA coding downstream 598337 23895529 ~ 23913499 (+)
XLOC_003369 CR854846.2 misc upstream 7142075 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 10553161 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 10570894 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 10579558 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 10585129 12679732 ~ 12680028 (+)
XLOC_003419 NA non-coding upstream 1361463 21902677 ~ 21903694 (+)
XLOC_003417 NA non-coding upstream 1506132 21612671 ~ 21759025 (+)
XLOC_003436 NA non-coding downstream 718643 24015835 ~ 24024576 (+)
XLOC_003440 NA non-coding downstream 763964 24061156 ~ 24083588 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_01807681_01819809 NA coding CI01000058 null 1807671 ~ 1819809 (-)