LOC110496202 (LOC106569985)


Basic Information

Item Value
gene id LOC110496202
gene name LOC106569985
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39358398 ~ 39372505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571965.2
TTAAATTGGATGCGATCCGCAaaccaatcccaaagaagaagaaaaagaccgCTTCTGTTTGCCCGCTGTTCGTATCAAAAGCATCACCTCCTAGGCCCGTGTCATCGTTTTTCTAGTATCATCTACCGCCCAGCCATCATGTCGTCCAGAACATTTTTCGTAGGAGGAAACTGGAAGATGAACGGTGACAAGAAAAGCCTGGGCGACCTCATAACGACCCTGAACACCGCAAGCCTCCACGATGAAACCGAGGTGGTGTGTGGCGCTCCCACCGTCTACCTCGACTTTGCCCGCTCGAACCTGGATGCCAGGATCGGTGTGGCTGCACAGAACTGCTACAAAGTCGCCAAGGGGGCTTTCACTGGCGAGATCAGCCCTGCGATGATAAAGGACTGTGGCGTGGAGTGGGTGATTCTGGGCCACTCGGAGAGGCGTCATGTGTTCGGGGAGAGCGACGAGCTGATTGGTCAGAAGGTGGCCCACGCCCTGGAGAGTGACCTGGGGGTGATCGCCTGCATCGGAGAGaagctggaggagagggaggctgGAACCACAGAGGAGGTGGTGTACGCCCAGACCCAGGCCATCGCAGACAACGTGAAGGACTGGAGCAAAGTGGTGCTGGCTTATGAGCCTGTGTGGGCCATCGGTACCGGCAAGACGGCCTCACCCGAGCAGGCCCAGGAGGTGCATGAGAAACTGAGGGAGTGGATCAGGGCCAACGTCTCTGAGGCCGTGGCCGACTCCGTCCGCATCATCTACGGAGgCTCAGTTACAGGGGCCAACTGCAAAGAGCTGGGCTCCCAAAATGACGTGGACGGCTTCCTGGTTGGCGGAGCCTCCCTCAAGCCAGAGTTTGTTGACATCATCAACGCGCGTGCCTAGAGCGCACAAGAGCAACCTAACCTGCTGCTAGTAGTGTCCTGTGACTGTCCCTCTTCCCAGAGTCTCTGTGTGAcaatgtcttacctgtgtttttGTGTCTGTCAAGAAGGGACTATTTGACTCACTTTGTACTACACTGTAGTTTAGGGGCCCGCCACAGTGGGGCCCGCCACCACTCCATTGGTTGATGCAGATGGTATTCTATGTGTTAAGGGTGGGACTTTTTACATTGGAACGGCCCTTTGGATGCAAGTTCCTAACAACTGCTATATCAGTAtacattctaaaatatatttttctgatATATTAATAAGCACTGCACTTGATGTTCCACACTGGATATGTGTTCACTCACAACTGTAGAGGGACCAGTACTTAGTGTATTGCTAGTGACTGTACAAGTTGCATTAGTCACTAGAAGCACAGTCATGCACGCGCTTGGTTTAGTCCTGCCCTTTCTCTCCTATTGGTTGAAGCACATGTCAATAACTTTTTCCAGCAAAAGACTGTCAAGACAAACCCACAAGGCTGAAGACTACTTGAATAAATGGTTTAGTCTGTGCTGTGAA

Function

NR:

description
triosephosphate isomerase A-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0006098 pentose-phosphate shunt biological_process
GO:0004807 triose-phosphate isomerase activity molecular_function

KEGG:

id description
K01803 TPI, tpiA; triosephosphate isomerase (TIM)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571965.2 True 1454 mRNA 0.52 6 39358398 39372505

Neighbor

gene id symbol gene type direction distance location
LOC110496203 LOC106588426 coding downstream 31360 39308819 ~ 39327038 (-)
LOC110496200 LOC106588422 coding downstream 62457 39269584 ~ 39295941 (-)
LOC110496198 LOC106588427 coding downstream 95942 39247198 ~ 39262456 (-)
LOC110496197 LOC106588427 coding downstream 113343 39233121 ~ 39245055 (-)
LOC110496190 LOC106588434 coding downstream 211803 39116591 ~ 39146595 (-)
LOC110496204 LOC106588420 coding upstream 3938 39376443 ~ 39383490 (-)
LOC110496205 LOC100136448 coding upstream 16710 39389215 ~ 39413466 (-)
LOC110496206 LOC106588419 coding upstream 61280 39433785 ~ 39452164 (-)
LOC110496815 LOC106588418 coding upstream 94921 39467426 ~ 39566572 (-)
LOC110496207 LOC100136435 coding upstream 242165 39614670 ~ 39616840 (-)
G1547041 NA non-coding downstream 89580 39268616 ~ 39268818 (-)
G1547039 NA non-coding downstream 94144 39263873 ~ 39264254 (-)
G1547038 NA non-coding downstream 95219 39262921 ~ 39263179 (-)
G1546933 NA non-coding downstream 125318 39232559 ~ 39233080 (-)
G1547052 NA non-coding upstream 2071 39374576 ~ 39384675 (-)
G1547103 NA non-coding upstream 41420 39413925 ~ 39414131 (-)
G1547104 NA non-coding upstream 41668 39414173 ~ 39414433 (-)
G1547107 NA non-coding upstream 44045 39416550 ~ 39416805 (-)
G1547131 NA non-coding upstream 80783 39453288 ~ 39453517 (-)
G1546396 LOC106588446 other downstream 570597 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 584714 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 682369 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 795080 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1144349 38165250 ~ 38214049 (-)
LOC110496208 LOC106588417 other upstream 253270 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 other upstream 270350 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1013465 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1267670 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1533182 40902519 ~ 40908744 (-)

Expression


Co-expression Network