LOC110496204 (LOC106588420)


Basic Information

Item Value
gene id LOC110496204
gene name LOC106588420
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39376443 ~ 39383490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571970.2
CATGctccctgctctctctgctctctctctttccctctctctatttctatctccGGGCTTATCCCTTCATCCCTGATCTCCTTCATCCCTCCAATCCTCATCTGTTCCTcacaggaggaagggagagagagttttCACAGGATTGCCTGCAACCAGTCTGTGGGTGAAAGCGTAAGAGGAATAAGATATAAGATAAGGATAGCAGGGCTGACTTGAGTATTGTGGGACATAAAAAGCTGCTCCAAAGGGCTACTGAGGCGGAAAAGACCAAAAATAAGAAGGATCACATTTTGTGTGGAAAAGTCTGCTAGTTTCTTTCTCCGGCGGTAACAGCCCCTATCAGCCGTTGCCATGGGTGAAATGGAGACGCTGAAAAAGGAGGCCGATGGCCTGAAGAGCCAGATTGAAGCTGCCCGCAAGGCGGTCAATGACACCACCATGGCTGCCGTAGCATCTGGTGTGGCGGCTGCACCCCGTGTCCAGCTGAAGAACAGAAAGACATTGAAGGGCCACTTGGCCAAAATCTACGGCTTGCACTGGTCTGCTGATAACAGGCACATGGTCAGTGCCTCACAAGATGGCAAGCTTCTTATTTGGGACGCCTACACCGGCAACAAGGTATATGCCGTCCCCCTCAAGTCTTCCTGGGTGATGAGTTGCTCCATGGCCCCTTCTGGCAATCTGGTGGCCAGTGGAGGTCTGGATAACATGTGCACCATCGTCAACATCAAGGCTGCCAGCCCAAAGACCCTAAGGGAGCTGGACGCACATGAAGGCTACCTTTCCCATAGCCGCTTCCTGAACGACAGCGAGATCCTCACTGCATCCGGTGACACCACTTGTTGCCTGTGggatctggagactggcaagCAGAAGGTGGTCTACAAGAGCCACGTGGGTGACTGTATGTGCCTGGCCTTGTCACCAGACCAGAACACTTTCATCTCAGGGGCCTGTGACTCCAGCGCCAAGCTGTGGGACATAAGAGATGGTGGCTGCAAGCAGACCTTCATCGGCCACACGAGTGACATTAACGCCATTGCGTTCTACCCTAGTGGCACTGCAGTTATCACGGGATCCGATGACTGCACCCTCAAAATGTATGACCTCCGTGCCGACCAGGAGGTCAATGGCTACCAGGACGCTGCGTTGAATGCAGGCGTCACGTCAGTCTCCCTCTCCAGCTCTGGACGCCTCATCTTCGCCGGCTACGACAACTTCAACTGCAACATCTGGGATTCCCTGAAGGCCGAGAAAGTCGgtgttcTATCTGGCCATGACAACAGAGTGAGCTGCATTGGGGTGCCAGATGATGGCTTGGGTATCTGCACAGGATCCTGGGATAGCTTCCTGAAGATCTGGAACTGAGCTGGTGCTCCAGAGGCGACattaggagagggagaggggggatggatggaactcgaggaggagaggagaaggggggatggatggaactagaggaggagaggagaaggggggaaTCACAAGCCTGAGAAATAAGGTTGCTCATTTTGGGATTGGGGAGATACCAGGAGGAGGATGTTTGCCGTACCATTTCACGTCATTTGTAACCGCTAGATCTTCCCTTCTCTTGCTCCCTCTTTCTCAGCTATGTGTGCAAATGTGGGAGGTGGTGAGTGGGACTTCATAGAACATGCTACATAAATGGCTTCGACAACAGCACAAGATGCAGTCGCGCTACATGTACACGAGAGTTTTGAAGTTATGGTTGACACTATCAATATCTAGGCAATGGCAAACACCAAAAAATAGGATATTTGAAGTAATTACTTGAAATAacgaattaataaaaaataaaaaaaatgctctACTTGTGTCTAAGGTGAGAATGACAATTACACATATAGATTTTTGACAATAAGAACGTGTGAGATAAATGCAGAAATATAATGCACATCAGTAACGATTTAGTATTACGGATACATTTTTATTGTCTTTGATTAATAAAGCCCGCAGATAGTAGCTGAAAGTTGATATGTACATTTATTTACATTTAGGTATTTAATTAGAGTGCATAGTTGATGTACAGTGTGATTTCTGTTTGGTCATACATATccggtgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggc

Function

NR:

description
guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571970.2 True 2145 mRNA 0.49 8 39376443 39383490

Neighbor

gene id symbol gene type direction distance location
LOC110496202 LOC106569985 coding downstream 3938 39358398 ~ 39372505 (-)
LOC110496203 LOC106588426 coding downstream 49405 39308819 ~ 39327038 (-)
LOC110496200 LOC106588422 coding downstream 80502 39269584 ~ 39295941 (-)
LOC110496198 LOC106588427 coding downstream 113987 39247198 ~ 39262456 (-)
LOC110496197 LOC106588427 coding downstream 131388 39233121 ~ 39245055 (-)
LOC110496205 LOC100136448 coding upstream 5725 39389215 ~ 39413466 (-)
LOC110496206 LOC106588419 coding upstream 50295 39433785 ~ 39452164 (-)
LOC110496815 LOC106588418 coding upstream 83936 39467426 ~ 39566572 (-)
LOC110496207 LOC100136435 coding upstream 231180 39614670 ~ 39616840 (-)
LOC110496208 LOC106588417 coding upstream 242281 39625771 ~ 39641803 (-)
G1547041 NA non-coding downstream 107625 39268616 ~ 39268818 (-)
G1547039 NA non-coding downstream 112189 39263873 ~ 39264254 (-)
G1547038 NA non-coding downstream 113264 39262921 ~ 39263179 (-)
G1546933 NA non-coding downstream 143363 39232559 ~ 39233080 (-)
G1547103 NA non-coding upstream 30435 39413925 ~ 39414131 (-)
G1547104 NA non-coding upstream 30683 39414173 ~ 39414433 (-)
G1547107 NA non-coding upstream 33060 39416550 ~ 39416805 (-)
G1547131 NA non-coding upstream 69798 39453288 ~ 39453517 (-)
G1547132 NA non-coding upstream 70414 39453904 ~ 39454184 (-)
G1546396 LOC106588446 other downstream 588642 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 602759 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 700414 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 813125 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1162394 38165250 ~ 38214049 (-)
LOC110496816 LOC106588265 other upstream 259365 39642841 ~ 39688750 (-)
G1548367 NA other upstream 1002480 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1256685 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1522197 40902519 ~ 40908744 (-)

Expression


Co-expression Network