LOC110496205 (LOC100136448)


Basic Information

Item Value
gene id LOC110496205
gene name LOC100136448
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39389215 ~ 39413466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571971.2
CAATGTCCGTGCTATAATCCAAAACATGCTCCCCACCTCTGGCTAAATTCTCTGTTTATTTTCACCTCGCATTCACATAATTTGTGACGGGGTGGTATCACAATAGTCTAGTTCTAGCTGCTGAATCAGTTTCTTATTGACGAGGATCACCGTGCGAGAGGCGAGATGGTTGATATGGGATCAACAGCATGCGATGGGATGTATTCTAAACTTATCGACAAAGATAGTCAATATTTGGACGATTCAGAGCTGCGCGGTCCTGAAGTGCACACGGTGTCTGTTCCCTCACTGAGAGCAGGCTCCAGACAGAGTGGCCAAGGGCCCTACAGGTTAGCCACGGGCTGCCTAGCCACACTCTGTGCTGTCCTGCTGCTGTCCGTCATCGCTGTGAGCACCCACTATAAGAACCTTTATCAGAGCTTGCGCAATGAGCATCTGGCTTCTCTGCCTCAGAATGACTCTGGTGGTCAAATCCAGATGCAGAGGCAGACCACCAATGTGACCACCCTGACTGAAGCCCTGAGAAAATTGCAGATGGAGAAAGAAGAccttgtgaaggagagagaggaacttCTGGCTAGGATGGCCAAATCagAACCAGAGCAAACATCACCCACATtactcccatctccactgtcaccTCCGTCAATCCCATTGCCCCCTTCAACCCCACTAACCTGTCCTCCGGACTGGCTGGTGTTCAACAGAAGCTGCTACTACATCTCCACCAGGAGTATGACCTGGCCGGACAGCCAGACCTGGTGCAAGGAGAAAATAGGACACCTGGCCATCATACACACTGCTgaggaacagACGTTTCTGTGGAACCAGTTACCTCGGGGCCACTGGAATGCCTACTGGTTTGGAATCAGTGACGAGACGGCTGAGGCAGACTGGCTTTGGGTCGATGGAACCAAATTGGTCGGGGGCTTTTGGGAGGAAGGCGAGCCCAACAACCACATTGACGAAGACTGTGGCTACATCGTGAAGACTCGCAAGCTGGAGCGCAAGGCGGTGAGCAGCTGGTACGACGCCCCGTGCACCATGTACTGGCCCTTCATCTGTGAGATCGAGATGTAGGCCTATGCACCTGCTACTTAGAGATAAGCACTTACCAGACTCGTGTTGGACCCAGAATTCCTCCCTGTCAACGTCCATAGTGATAGACCAGTGATGACCAACACTTCACCTGCAGAGCTACTGGGTATtcaggtttttgctccaaccctgcTCTAACACATCTGTTTCAGCTAACCAAGGTTCGGATGAGCCGCtgattagtagaatcaggtgtatTAGAGCAGGGAAAGAGCAAGACCGGTAGCTCTTCAGGAAGATGGTTGGCCACCCCTGTCGTTGACTTTTACAGCATTATCAGGTCTGAAGAGCAATGCTTTACTTTAATAGTATCTACTTTCATTTGCTTTTTCAATTAAACTTTTACTCCAGGAGGATCTTATATAGTTACTGTTGTGTCATTGAAGTGGTCACCACAGTTCAAAATCCTTCTAAAGCAATGTCTGTCAATCAACGGTCATGTTATTTAGATtcatagaagaagaaaaaaaatatatatataaaaaaaaaagatttatgtaaatgtttttcatAAAACAGACGATCAAATGATCTATTCATAACAATGCAAATgcatttgttttggttttgtcAATAAAAATGTTGAAAATGGAAAA

Function

NR:

description
C-type lectin domain family 4 member M-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571971.2 True 1694 mRNA 0.47 6 39389215 39413466

Neighbor

gene id symbol gene type direction distance location
LOC110496204 LOC106588420 coding downstream 5725 39376443 ~ 39383490 (-)
LOC110496202 LOC106569985 coding downstream 16710 39358398 ~ 39372505 (-)
LOC110496203 LOC106588426 coding downstream 62177 39308819 ~ 39327038 (-)
LOC110496200 LOC106588422 coding downstream 93274 39269584 ~ 39295941 (-)
LOC110496198 LOC106588427 coding downstream 126759 39247198 ~ 39262456 (-)
LOC110496206 LOC106588419 coding upstream 20319 39433785 ~ 39452164 (-)
LOC110496815 LOC106588418 coding upstream 53960 39467426 ~ 39566572 (-)
LOC110496207 LOC100136435 coding upstream 201204 39614670 ~ 39616840 (-)
LOC110496208 LOC106588417 coding upstream 212305 39625771 ~ 39641803 (-)
LOC110496816 LOC106588265 coding upstream 229375 39642841 ~ 39688750 (-)
G1547052 NA non-coding downstream 4540 39374576 ~ 39384675 (-)
G1547041 NA non-coding downstream 120397 39268616 ~ 39268818 (-)
G1547039 NA non-coding downstream 124961 39263873 ~ 39264254 (-)
G1547038 NA non-coding downstream 126036 39262921 ~ 39263179 (-)
LOC110496197 LOC106588427 non-coding downstream 151170 39233121 ~ 39245055 (-)
G1547103 NA non-coding upstream 459 39413925 ~ 39414131 (-)
G1547104 NA non-coding upstream 707 39414173 ~ 39414433 (-)
G1547107 NA non-coding upstream 3084 39416550 ~ 39416805 (-)
G1547131 NA non-coding upstream 39822 39453288 ~ 39453517 (-)
G1547132 NA non-coding upstream 40438 39453904 ~ 39454184 (-)
G1546396 LOC106588446 other downstream 601414 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 615531 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 713186 38674378 ~ 38676029 (-)
LOC110496167 LOC106588455 other downstream 825897 38557052 ~ 38563365 (-)
G1546053 NA other downstream 1175166 38165250 ~ 38214049 (-)
G1548367 NA other upstream 972504 40385970 ~ 40391883 (-)
G1548517 NA other upstream 1226709 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1492221 40902519 ~ 40908744 (-)

Expression


Co-expression Network