LOC118941156 (ssl-2)


Basic Information

Item Value
gene id LOC118941156
gene name ssl-2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39619719 ~ 39622185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952764.1
AATAGCTCACACGATAGGTAAACATTCCAAAGGACATTGCCATGAAAAGCCATTCATATCTGGAATTTGAACACGCCTGAAATCAGCTCTATGGAACACCATTACCAGCTAACAGTTGTTTGAAATGGCTATTTATTTGTAGCTGACAGTGTAAAAGTGCTCCTCTTTCTCCAGATGAACAGAACCTGCAGAACTTACCAGTGATTCACATTAACAGTACCTTGTTTATAGGagaccatcatcaccaccatggCAATGTTGACCATATCTCTGCTGCTCTGTGCTGCCGTTGCTATGAATGGAGCAACAGGAGCTAAGGGGGAAGATGAGAGagtagtggcagcagagaacaggaaCCAATGCCCCACAGGCTGGTTCCAATTTGGATCGCGCTGCTTCATGTTCGTCGAGACTGCAAGGTCATGGCCCCTAGCAGAGCGCCACTGTGTGTCCCTTGGAGCAAACCTGGCGTCTGTGCACAGCTCTGCGGAGTATCAATTTCTACAGGCAATTGCGGGGTGCAAGACTGGCGGTTTCTCAACTACCTGGATCGGAGGATTTGATGCTGTTCAGGACAGACTATGGTTTTGGAGTGACGGCTCTGAATTTGATTACCAGAACTGGAAGAAAGGAGAGCCCAATAATAGCGGTGGCAGAGAGCCATGTATAGTGATCAACTGGGGAGATGAATATCGCTGGAACGATATGAACTGTGGAAACAGCTTTCCCTCGGTGTGCTCCAAAAGAATGTGTGAAATCCAGAAAAACTGAAACCAACAATGATCCTCCATAGTGCCAACATCCAACTGAACACTCTTTATGGTAAAGTCAAATATTCAGTAAAGATTATTTGTACTTGTTTTGTTGTTTATTGTCAATAAAACGGGAGTAGACATTG
>XM_036952763.1
ACACGATAGGTAAACATTCCAAAGGACATTGCCATGAAAAGCCATTCATATCTGGAATTTGAACACGCCTGAAATCAGCTCTATGGAACACCATTACCAGCTAACAGTTGTTTGAAATGGCTATTTATTTGTAGCTGACAGTGTAAAAGTGCTCCTCTTTCTCCAGATGAACAGAACCTGCAGAACTTACCAGTGATTCACATTAACAGGagaccatcatcaccaccatggCAATGTTGACCATATCTCTGCTGCTCTGTGCTGCCGTTGCTATGAATGGAGCAACAGGAGCTAAGGGGGAAGATGAGAGagtagtggcagcagagaacaggaaCCAATGCCCCACAGGCTGGTTCCAATTTGGATCGCGCTGCTTCATGTTCGTCGAGACTGCAAGGTCATGGCCCCTAGCAGAGCGCCACTGTGTGTCCCTTGGAGCAAACCTGGCGTCTGTGCACAGCTCTGCGGAGTATCAATTTCTACAGGCAATTGCGGGGTGCAAGACTGGCGGTTTCTCAACTACCTGGATCGGAGGATTTGATGCTGTTCAGGACAGACTATGGTTTTGGAGTGACGGCTCTGAATTTGATTACCAGAACTGGAAGAAAGGAGAGCCCAATAATAGCGGTGGCAGAGAGCCATGTATAGTGATCAACTGGGGAGATGAATATCGCTGGAACGATATGAACTGTGGAAACAGCTTTCCCTCGGTGTGCTCCAAAAGAATGTGTGAAATCCAGAAAAACTGAAACCAACAATGATCCTCCATAGTGCCAACATCCAACTGAACACTCTTTATGGTAAAGTCAAATATTCAGTAAAGATTATTTGTACTTGTTTTGTTGTTTATTGTCAATAAAACGGGAGTAGACATTG

Function

symbol description
ssl-2 botryococcus squalene synthase

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952764.1 False 898 mRNA 0.45 6 39619719 39622185
XM_036952763.1 True 876 mRNA 0.45 6 39619727 39622185

Neighbor

gene id symbol gene type direction distance location
LOC118940977 NA coding upstream 32857 39585870 ~ 39586862 (+)
LOC110496201 LOC106588424 coding upstream 262595 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 389798 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 401511 39208209 ~ 39218208 (+)
LOC110496193 LOC106588432 coding upstream 416605 39195633 ~ 39203114 (+)
LOC110496217 LOC106569969 coding downstream 443075 40065260 ~ 40077268 (+)
kifc1 LOC106588407 coding downstream 473643 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 481546 40103731 ~ 40110006 (+)
LOC110496223 NA coding downstream 507275 40129460 ~ 40142425 (+)
LOC110496224 NA coding downstream 541956 40164141 ~ 40199663 (+)
G1547223 NA non-coding upstream 19397 39600037 ~ 39600322 (+)
G1547222 NA non-coding upstream 19882 39599561 ~ 39599837 (+)
G1547215 NA non-coding upstream 29446 39590061 ~ 39590273 (+)
G1546868 NA non-coding upstream 88582 39530528 ~ 39531137 (+)
G1546818 NA non-coding upstream 128950 39470047 ~ 39490769 (+)
G1547253 LOC106569976 non-coding downstream 75449 39697634 ~ 39701800 (+)
G1547327 NA non-coding downstream 127403 39749588 ~ 39750020 (+)
G1547329 NA non-coding downstream 129525 39751710 ~ 39752942 (+)
G1547330 NA non-coding downstream 134015 39756200 ~ 39756869 (+)
G1547333 NA non-coding downstream 137867 39760052 ~ 39760449 (+)
G1546817 LOC106588418 other upstream 150354 39467454 ~ 39469365 (+)
G1546713 LOC106569985 other upstream 247238 39358411 ~ 39372481 (+)
G1546641 NA other upstream 473467 39133119 ~ 39146252 (+)
G1546605 LOC106588434 other upstream 499700 39116488 ~ 39120019 (+)
LOC110496176 LOC106588451 other upstream 928450 38677975 ~ 38696088 (+)
G1547334 LOC107666349 other downstream 139028 39761213 ~ 39761503 (+)
G1547652 LOC106588410 other downstream 413332 40035517 ~ 40040594 (+)
G1547743 NA other downstream 579724 40201909 ~ 40202458 (+)
G1547788 NA other downstream 704290 40326475 ~ 40327181 (+)

Expression


Co-expression Network