LOC110496209 (LOC106588416)


Basic Information

Item Value
gene id LOC110496209
gene name LOC106588416
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39697624 ~ 39723536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571979.2
ggggctgggggtTGAGAATACGGAGTGAGTGGAAAAATAAAAGTCTgtagaaagagaaaaaaaaacgtgGTTCCATACTCAGATTGAGAGTTTTTCATGCGATGTTTTGACTGCTGCAATGACGATGTGGAAGATTCGACCATTGCAACATTTTAATGCGGCTAAACTGATTAGCTAAAGAATTATAACAAGGCATTCCCCCACTATCAGCACGACGGACTCAAAGTTCAACGCCATGCAGTGCTGACGAGTGGGTTTATACCAAGCTAGAGCAACATTCGTCTCTACGGTTTGtgaaaaagaaaatacaaaataaagttAGGAGCTCAGAAGTAACTAGGGAACAGTAGGGGGCCTGGGGGGTTAGAGCGCATGAGAACAGAGGGGTTTAGGCTAAGCTTAGAAACGGAAAAGTTTTCAAGCCAGCGAGGAATTTTTCGATTTTAATTTGTCAAGAACAACGAAGGCTGGGTGTCCAATACCACGCTAACTAACAACCAAACGGGAAACTTTCTGAATTGACCAGAGTCACCATGAAAACCCCCGGGGACACGGggTTTGCCTTCCCCGACTGGGCCTACAAACCCGAGTCGAGCCCCGGCTCGCGACAGATTCAGCTCTGGTGCTTCATCCTGGAGCTGCTGCGGAAGGAGGAGTACCATGAAGTCATCGCTTGGCAGGGCGACTACGGAGAGTTTGTCATCAAGGACCCCGAAGAGGTGGCCCGACTGTGGGGTGCCCGCAAGTGCAAACCGCAGATGAACTACGACAAGCTGAGCAGAGCGCTTAGATATTACTACAACAAGAGAATCCTCCACAAGACCAAAGGGAAGAGGTTCACCTACAAGTTCAACTTCAACAAGCTGGTGCTGGTCAACTACCCCTTCATCGACATGGGCTCTGGTAGGGGAGTCCCCCAGAGCGCCCCTCCCGTGCCGACCGGGGGCAGCCACTTCCGCTTCCCCCCCTCCACCCCGTCCGAAGTGCTCTCCCCCAATGAGGACCTGCGCAGCCCGGGCGTGTTCAGCAGCGTGGCCCGCCGTATGGGCCGCGGCTCTGTCTCCGACTGCAGCGATGGCACCTCCACCAATTCTGAGCTGGAGGAAGGCGTGGGGGGTGAAGATCGTGGCGGCGTGGGCCCCGAACGGGCGTTCCGCGGCCTCCTCCACCCCCGCCTCTCCCATGACTCGCTGTTTCGTGCCTATGGGGGACCCGGCGGGCTAGGCCGTCCCCCGCCCGGCCACAGGGTCCACGGTGACCCCATGTCTCCGTTCCCTGTGTCCCCACTGCCGGGCCCTGGGGGCCTCCTGGGGTCCACTCTGTCCCCAGCCCTGTCCATGACCCCTGGCTCCCACCTGCCCTACACCCCGTCCCCCTCCCTCAGCCCCATGCTGGGCTCCCACTTCTCCTTCAACCCGGACGACATGAAGCGCTACCTGCAGGCCCACCACCAGAGTGTCTACAACTACCACCTCAGCCCCAGAGCCTTCTTCCACTACCCCAACATCGTGGTCCCCCAGCCCCACAGGCCTTCTGCCGCCCCTGACAAGCCCATAACAGCCCACCACCATGCCCCGCCCATGCCCCACTCCCATTCGCTGCACCACCATCAAGGGGAGGAGCAGCACCCCTCGCCCTTCAAGTTCAAGCTGCAGCCGCCTCCACTGGGGCGTAAACAGAGGGACTGCTCCGCCTCCTCTACCGGTGGGTCCTCCTCCAGCCTAGGCTCCTCCTACGCTGCTTTAGGGCTGCTCTCTAACTCCTCCTCAGTGGGCCCTCCCAAAATCAAGGTGGAGCCCGTCTCTGACATTGAGTCCGATGAGGAAGTGGAGGTGACCGACATCAGCGAGGAGGACGAGCTGCTCGACGACTACGAGGGCGACGTCTTCACCCCCCCTCATCCCACCAACGGAACCGCCCCTACCGCCATTACCAACCTGGGTGCCATCGCCGCTGACGACCTGGATGAGGATGTGTTCAAGACCCCCGCCGCCCCTCCCATGGGCCCTCTGACTCCCTCCCTGCTGGGCCTCAAGAGCGAGCCAGGCCAGGGACCTCCCATCAGCCCCGGCGGCACCCTCTGTATCCCCCTCAAGCTGCGCTTCAAACGCCGCTGGAGCGAGGACCAGAAGATGGAGGCCTATGGCGAGCGCGAGGAGGCCGAGGATAAGAAAGTGCGGGCGGagaaggaggtggtggaggagccGGCAAGGAGGGAGTCAGAGAATGGGGAGGGGCCAAGGAGAAGCCCGTCCATGAGTCTGGGGGCTCCTCCGGCCCAGCGCAGGGCCAGCTCCGAGCTGCAGAGAGCCACAGCCCAGCTGTCTCTGGAGAACCACGGAGCATGTTGAGgcagggatacacacacacacacagagagagagagacgatctCATGCCCATACCTACATACACACTCGCTCATATAACCAAGCTTACGCATATACACAAGTGCCTGTGCGGAAGGCTTTTTTTACTCTCATTTTGAACTGATTTAATAGTGAACATTAACACACAGCTCAACATGCTGTGACTGAGAAACTAAGGCTGGCCATTAGATATCCCCTCTAAACGGGCCTAGTTCCAGGATCCATCCCTTAGACCTGTACGCTGCCTTAAGGTGCCTCCATCTCCCCTCAACATCTCCTCCCAGTAACGCCCTTAGCTCCTTAGCCTTTTATGTTGCATCAAAACAGATGGGAAAGAGTCCCTTCAGACCCACTCTCCCAGAAGAACCTTAATATTGCtgacactgggggggggggtgacatcaCGACAATGCCTTCTACCTTCAACAGACTTGAAAAGAGATTACAGAAGTGCTTGTCTTGACGGGGACCGCCTACCAACTCTTGTCAACTGTTCCATCACCTTTTATGACTGGGAAGGGATCTCAGGATTCAAAACAGAGACCTCCTTGTCCGCGTATGTCAGACCTCTTCGACAGGGACAGACTTAAGACTGAATTTGTCTGAGTGAGCCCTCCTTTTCACCAGACGCTCTTTGATAATCGTCTCTCCCCAGACTTGAGCATAGGGACAAAAACCATAATGGCGTGCAGATCTATAGAGGACGTGGACGGACTGACTGGAGACCCCCCCCCCTTGTCTCTTATGGCCTTCCTGTCACTCAAGTGTTGATTGACACCTACCATGGCAACAATGCAGTACCCAACCCAACCAGGCCTTAATGGACAGCTTTTGGGGACCCTACAAGACTTTTGCACAATCTTCTAAGAAGAGCGGATCGAGGAAATGGGTAGTTAGTCCGCGCTTGAAATGTTGTTGAAATATTATCTTAAAGGTCTCCTTTCCCCTCGTTTAAGCCGCTCCTGTTTCTCCCATAGAGGGTGcctcaaaaaacaaaaaaaaaggacCGTATTTGGGGAGATGCGGTGGGGCATTTGCAGTGAACGGAGGGTTAGAAGTACCTCTGTATATACAATGTTCTTGAACCGAGACTGAAATTAATAGATTTTCCCCTCCCGCCCCAAGAAAGTATACCATGAATGCGAGTACCGAGGTGATATCAGGCAACTTCACAAAGCCTTTTTAGTGACATTTGAACTTTGCCCGTTTTAATGAACAAACCGGACAAATTGAGATTGTGCCTTTTTTTTAAACTGACAGGTGACTTAAAGGAATTACCCCTGCCAAATAATGTGctcacactctcccacacacagacacaatgttGTTCCCTGGCGTTCACActcgtgtaaaaaaaaaaaaatctcattgtTAACTCACATGGTACctccccacaaacacacacacacacacacacttctgtagAAGCCTCAAGAGCATACCGTACTGAAATGAGTTGGTGTGGCGTGGGAACAGACCGCATACACTGATTGCCACTTTGCCTTATTTGTTTTATACCATTTAAGAAACAGATGCTGAATAACTTAAACCAATACTACACATTTTATTTGAATATATTAAATACAAATGTTATATTTCCAAAAAACGTATAATTTGATTATGAATCAGGAATTGTAATGGTAACTATATGTTGGGCATATATGAGGGAGCCCTCTTCTCTCCTTGCCCCTCTTGACTGTGGAACTGCATTGAAAAGGGTCCTTGTGCAAGAGGAATCGGAACACGGTTCTGTTTGTACTATAAAAACAAGTATTCTGTTTAGGGGTTGAAGGATGGTGAGTGTAAAGGGACAGTAAATGAACAAATAATGGAGAAATGTTAGATCTTGGACCCTGAACCTCAGCTTTTACGACCAGGCTCACCCCTTCTCGACATCCCAAATGCTCCTGGGAACACAGGGACTAGAGGTCTACTGAACCTGCCTTTTGTCTTGGACCATGAACTATACTAGGAGAATGCATCAGCAACACTCCACCACCTGTGTGTACACATGTGAGGTAGACCTGGTCTGCTGAGAGGGGTGGAAATGCGTAAATGCGGCTAACCTAGAGTAAAAGGAAGGTGACATCACTAGCGACATGATTTCCCACCCCCGTACTAGTCCCTCTGGCTTTGTAGACGCTTAACCAGAGAAACCACCACCGCCCAAGCAGGATATGACATCACAAAACCTCGGAGAGGGACTTCCCGTAATCTGAGAAAACGCTTTGCAGGTGCCATCTACTGTGTATATGCCCCTCCAGCTGGGTAACATAACAAGATCCAGGCCAAAATAAGACTTGCCCAGAGTTTGTTCATAGCGCTAGTGTGGCGTGAGTGGGTGTCTAAGCAGCTGTTGGTGTTGCCTTaaggcgtccgcatgcttcccagcaGAAACCGTTCAGAAGAGTTTGTGGATTTATTATGctaacattttgttacattttggACTTCGGTAAGGTTTTTTCGGCTGTTTGGGCACATTATATTTTTTCTAGAAGGAAACCGACGTCAGTAGCTGAAGTCTATGCCCcttcggtgattggtcaacagtatggattcttcaataaagtcttagTTGTCATTCAAGGAGAGACGACtcattttcatgcacatttttttttgtttagaAATACTGCACCCACTTAGTTAGGTTTAAAATTGCGCGACTAAGATCTTCTCTGCAAAAACTTCAATTAATTACATATTTCTTGAGTTATTCTGACTactttgaggaagtgtatactggctacggcatctcaaaatggacaaaccgTACTATTGCcacttttttttcttgtttttcaagcgaATGTCTTTAAGGGAGTTTTGCGAACACAGTCATTCGGTTCGGGACCAGTCAAACAGAAGCATGCTGATGCCTTTAGCCACCCAGCTAGTCTTTTGTCCCACCTTGCATTGTAACTGACAGCTGCCTTAATTGTTGCTTAGAAAGAAACATTAAATCACCATTTTTTCCCTACTATACTTTTCCCTCAATATCATCATTGCTGTTTATTTTTCAAAATATATTATtactgtcattattattattattattattattattattattattattattattaacatgATTTACTATTTGATTATTTTGTACCCTGGGCCTACCTCTTTTCCATGGCTATTTGAATCTCTCATGagttgtgttttatttttcagtATGTATTTTCCAAACAATGACAACTCCTCCATCTTACACTTATCTGAACTAAAATAGTAGTTAAAACTTCAACTAAGCTGGTTGTATTTGTAATTGTGGACACATGGAAAAGAGGGGCTCACATAATCCTATCACATTACCTTcgttttgaaatatattttttggtcttgtgtatatatattatttttcacTTTTGGGAGGACTCTGTGAGGAAAAAGATATTGTATTATTTGAAAGGtgaccatctctctccctctaacctccctctctctcttcgttCACTCTTCTCAGCGGTTATTTAACACTCAAACTGAGAGATGAGACTCCATGCCTTGAGGAAGCATACCTTCTGTTTCTCTTGTATTTTTCACCCCTTATTTGTAATTAAATTGTAATCAGGGTTCATTAAAACAGGTAAAAATTGA

Function

NR:

description
ETS domain-containing transcription factor ERF-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09434 ERF; ETS domain-containing transcription factor ERF

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571979.2 True 5974 mRNA 0.49 5 39697624 39723536

Neighbor

gene id symbol gene type direction distance location
LOC110496816 LOC106588265 coding downstream 8874 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 coding downstream 55821 39625771 ~ 39641803 (-)
LOC110496207 LOC100136435 coding downstream 80784 39614670 ~ 39616840 (-)
LOC110496815 LOC106588418 coding downstream 131133 39467426 ~ 39566572 (-)
LOC110496206 LOC106588419 coding downstream 245460 39433785 ~ 39452164 (-)
LOC110496210 LOC106588415 coding upstream 32003 39755539 ~ 39825088 (-)
atp1a3a LOC106588414 coding upstream 141451 39864987 ~ 39897336 (-)
pvrl2l LOC106588412 coding upstream 210108 39933644 ~ 40019541 (-)
LOC110496213 LOC106588411 coding upstream 306114 40029650 ~ 40034564 (-)
LOC110496214 LOC106588410 coding upstream 315007 40038543 ~ 40048437 (-)
G1547474 NA non-coding downstream 18495 39678604 ~ 39679129 (-)
G1547454 NA non-coding downstream 86077 39609934 ~ 39611547 (-)
G1547442 NA non-coding downstream 102877 39594308 ~ 39594747 (-)
G1547441 NA non-coding downstream 104920 39592392 ~ 39592704 (-)
G1547440 NA non-coding downstream 106307 39591093 ~ 39591317 (-)
G1547501 NA non-coding upstream 13255 39736791 ~ 39736990 (-)
G1547510 NA non-coding upstream 26783 39750319 ~ 39750552 (-)
G1547537 NA non-coding upstream 83483 39807019 ~ 39807225 (-)
G1547550 NA non-coding upstream 113985 39837521 ~ 39837785 (-)
G1547558 NA non-coding upstream 132559 39856095 ~ 39856321 (-)
G1546396 LOC106588446 other downstream 909823 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 923940 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1021595 38674378 ~ 38676029 (-)
G1548367 NA other upstream 662434 40385970 ~ 40391883 (-)
G1548517 NA other upstream 916639 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1182151 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1939900 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2591750 42315286 ~ 42316079 (-)

Expression


Co-expression Network