atp1a3a (LOC106588414)


Basic Information

Item Value
gene id atp1a3a
gene name LOC106588414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39864987 ~ 39897336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571982.2
CTATGGGAGTGCCAGTGCATCTCACACACCCACTGGCATTTCTTTCACACACGGAGTGGtgtggagagtggagagggacGGCAACTGGGCATAGCAGCGGAGGGAGACAGAATCCGAATACCGCTAACCAAGACGCTCGGCTCTTCAATTTGACCTGCCTACTATCAACTATTCTGCTTTGAATCCAGCCTAAAACAGTTTCATCTGCTGATACCCGACTGACTGAGCCGAGATGGGGTACGGACGGTCAGACAGCTACCGTGTGGCCACCACGACGGAGAAGGATGAGAAGGAGTCCCCCAAGAAGGCGGACTCCAAGGCAGACAAGAAGACCAAGGACATGGAGGAATTGAAGAAGGAAGTTCCCTTGACGGAACACAAGATGTCCATCGAGGAGGTATGCCAGAAGTACTCTACCGACATAGTCCAGGGTCTGACCAATGCCAAGGCCGCTGAGTACCTGGCTCGAGACGGCCCCAACGCCCTCACGcctccccccaccacccccgAGTGGGTCAAGTTCTGTCGCCAGCTGTTCGGTGGCTTCTCCATCCTGCTGTGGACCGGCGCCATCCTCTGTTTCCTGGCCTACGCCATCCAGGCCGCCACCGAGGACGAGCCCGCAGGAGACAATTTGTACCTGGGTATCGTTCTCTCGGCTGTCGTCATCATCACCGGCTGTTTCTCCTACTTCCAGGAGGCAAAGAGCTCCAAAATCATGGAGTCCTTCAAGAACATGGTGCCCCAGCAAGCGCTGGTGATCCGCGAGGGCGAGAAGATGCAGATCAACGCTGAGGAGGTGGTGGCTGGAGACCTGGTGGAGGTGAAGGGAGGAGATAGGATCCCCGCCGACCTCAGGATCGTCTCTGCTCACGGCTGCAAGGTGGATAACTCCTCCCTGACTGGTGAATCAGAACCCCAGAGCAGGTCACCTGACTGTACCCATGACAACCCCCTGGAGACCCGCAATGTCGCTTTCTTCTCCACCAACTGTGTTGAAGGCACGGCGCGTGGCATCGTGGTGTGCACCGGCGACCGTACCGTCATGGGCCGTATCGCCACCCTCACCTCCGGCCTGGAGTCGGGCAAGACCCCCATCGCCAAGGAGATCGAGCACTTCATCCACCTGATCACAGGCGTGGCCGTGTTCCTGGGCATCACCTTCTTCATCCTGGCTGTCTGCCTGGGCTACACCTGGCTGGAGGCCGTCATCTTCCTCATCGGCATCATCGTGGCCAACGTGCCCGAGGGCCTGCTGGCTACTGTCACTGTGTGTCTGACCCTGACCGCTAAGCGTATGGCTCGTAAGAACTGCCTGGTGAAGAACCTTGAGGCTGTGGAGACCCTGGGCTCCACCTCCACCATCTGCTCTGATAAGACTGGCACCCTGACCCAGAACAGGATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCACGAGGCCGACACCACTGAGGACCAGTCTGgCGCCTCTTTCGACAAGAGCTCGGAGACGTGGTTGGCGCTGGCGCGCGTGGCGGCCCTGTGTAACCGGGCGCAGTTCAAAGCGGCTCAGGACCAGCTGCCCATCCTGAAGAGGGACGTGGCGGGCGACGCCTCCGAGTCCGCGCTGCTGAAATGTATCGAGCTGTCCTGCGGCAGCGTCAGGCAGATGAGGGAGAAGAACAAGAAGGTGGCCGAGATCCCTTTCAACTCCACCAACAAGTACCAGCTCTCTGTGCATGAGACGGAGGACGAGAACGACAACCGCTACCTGCTGGTGATGAAGGGAGCGCCAGAGAGGATCCTGGACCGCTGCTCCTCCATCTTGATCCAGGGCAAGGAGCAGCCCATGGACGAGGAGATGAAGGAGGCCTTCCAGAACGCCTACATGGAGCTGGGAGGACTGGGGGAAAGAGTACTCGGCTTCTGCCACCTGCTAATGCCCGAGGACCAGTACCCCAAGGGCTTTGCCTTCGACTGTGACGACGTCAACTTCACCACAGAGAGCCTGTGCTTCGTGGGCCTCATGTCCATGATTGACCCTCCCCGTGCCGCCGTGCCCGACGCCGTGGGAAAATGTCGCTCCGCTGGCATCAAAGTCATCATGGTGACCGGCGATCATCCAATCACAGCCAAGGCTATCGCCAAGGGCGTGGGCATCATCTCCGAGGGCAACGAGACCGTGGAGGACATCGCCTCTCGCCTCAATATCCCTGTCAGCCAGGTCAATCCCAgGGATGCCAAGGCGTGTGTGATCCACGGGACCGACCTGAAGGATTTGTCTCAGGACCAGATGGATGACATCCTGAGGAACCACACTGAGATTGTGTTCGCCAGGACCTCCCCCCAGCAGAAACTCATCATCGTGGAGGGCTGCCAGAGACAGGGTGCCATCGTGGCTGTGACTGGTGATGGTGTGAACGACTCTCCCGCCCTGAAGAAGGCTGACATCGGCGTCGCCATGGGGATCTCCGGCTCAGACGTGTCCAAACAAGCCGCTGACATGATCCTGCTGGACGACAACTTTGCCTCCATTGTCACCGGAGTGGAAGAGgGACGTCTGATCTTTGACAACCTGAAGAAGTCCATTGCCTACACCCTGACCAGTAACATCCCTGAGATCACCCCCTTCCTCTTCTTCATCCTGGTCAACATCCCACTGCCCCTAGGGACCATCACCATCCTCTGCATCGACCTGGGAACTGacatgGTGCCAGCGATCTCCCTGGCCTACGAGGCAGCAGAGAGTGACATTATGAAGAGACAGCCCAGAAACCCAGCCAGGGACAAACTGGTGAACGAGAGGCTGATCAGTATCGCCTACGGACAGATTGggATGATCCAGGCTCTGGGAGGGTTCTTCTCCTACTTTGTGATCCTGGCAGAGAATGGTTTCCTTCCCTCTTTATTGGTGGGCATCAGGCTAAACTGGGACGACCGCTCCAACAACGACCTAGAGGACAGCTATGGACAGCAATGGACCTATGAACAGAGGAAGATAGTGGAGTACACCTGTCACACAGCCTTCTTCGTCAGTATTGTGGTGGTACAGTGGGCTGATGTCATCATCTGCAAGACCAGGCGCAACTCTGTCTTCCAGCAGGGCATGAGGAATAAGATCCTGATATTTGGGCTGTTTGAGgagacagctctggctgctttcCTGTCCTACACCCCAGGCATGGACGTGGCTCTCAGGATGTACCCCCTCAAgCCCAGCTGGTGGTTTTGTGCGTTCCCGTACAGTTTCCTCATCTTTGTTTACGATGAGATCCGAAAACTCATCCTGCGCCGAAACCCCGGAGGCTGGGTGGAAAAGGAGACATACTATTAAATTATCAAACCATTCTTTACTTCTCACCCCCCTTACCTCCCCCTCGTTTTCCTgctccctacctccacccctcGTCCCTCTAATCACATACAAACCATACAAGAAACCGCATCTGAAAACTCATCCATTCCTCATCCCGTATTTTCATCCAACATCGCCTTGAGGACAAGAGGACCAACCACCGAGAAGGAGAGGAACAGGACGATCACGCCAGATCCCTGCGCCCCTCTTCGTCTCTGCCTTTTTTTTCTGCCAAAAGACTACAGCATAGTCAACACTGCCAATACTCTTCGAATGTTTACTACACTGTTATGACACTGTTTCTAAATGTGCTAATACACTGTCATGTACAAAATACCGGTATCGCTCTCCTCTATCGACAACAAAATGGCAGCTGCATCTAGATTCCCCCGGCGAGCGGTGTGGCGTCTTTGTCACCTGTTCCACCCCGCCATCCTCTCAACACGCCCCTCAAGCCACTCCCACCACTCCCTGACCCAATAGGTATAACAGAAAGATCCCACCGCGGACACCAGTAAACGTGGAATAATCTCCCACGGCCTCTacaggggtaaaaaaataaaatccccCTCCTTCCTGCTCgtgttcccctccctcctcctcctgttcccctccctcctcctgtttTTCTgccaatgttgttgttgttttctaaaCAATTGTTCGTAACACTACGGTGTGTTTTTTAATGTTAGGAGTGGGTCTGGGAACTGCtcgtctgtctgtccctgtgcgACTTCCCCCTGTCcttgtaaacccccccccccccaactaacCCCTGCTAAAAAAATGCAACAATCTTTCTGTATCCTAAGAAATAGAGATTTCTCTCCCATGTCATTATTTAAATAAGTGAGCAATGGAATAAGACACTGTACCTTACATGCGAAACAGCAGCAAgaaatgaaataaaatataagGATCTCTCTTTTTTTTTCCCA

Function

NR:

description
sodium/potassium-transporting ATPase subunit alpha-3

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571982.2 True 4281 mRNA 0.55 22 39864987 39897336

Neighbor

gene id symbol gene type direction distance location
LOC110496210 LOC106588415 coding downstream 39899 39755539 ~ 39825088 (-)
LOC110496209 LOC106588416 coding downstream 141451 39697624 ~ 39723536 (-)
LOC110496816 LOC106588265 coding downstream 176237 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 coding downstream 223184 39625771 ~ 39641803 (-)
LOC110496207 LOC100136435 coding downstream 248147 39614670 ~ 39616840 (-)
pvrl2l LOC106588412 coding upstream 36308 39933644 ~ 40019541 (-)
LOC110496213 LOC106588411 coding upstream 132314 40029650 ~ 40034564 (-)
LOC110496214 LOC106588410 coding upstream 141207 40038543 ~ 40048437 (-)
LOC110496215 tbb5 coding upstream 159058 40056394 ~ 40063549 (-)
LOC110496218 LOC106588408 coding upstream 182879 40080215 ~ 40093772 (-)
G1547561 NA non-coding downstream 7124 39857659 ~ 39857863 (-)
G1547558 NA non-coding downstream 8666 39856095 ~ 39856321 (-)
G1547550 NA non-coding downstream 27202 39837521 ~ 39837785 (-)
G1547537 NA non-coding downstream 57762 39807019 ~ 39807225 (-)
G1547510 NA non-coding downstream 114435 39750319 ~ 39750552 (-)
G1547609 NA non-coding upstream 27303 39924639 ~ 39924993 (-)
G1548257 NA non-coding upstream 124452 40021788 ~ 40021998 (-)
G1548260 NA non-coding upstream 127900 40025236 ~ 40025442 (-)
G1548270 NA non-coding upstream 156039 40053375 ~ 40053601 (-)
G1546396 LOC106588446 other downstream 1077186 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1091303 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1188958 38674378 ~ 38676029 (-)
G1548367 NA other upstream 488634 40385970 ~ 40391883 (-)
G1548517 NA other upstream 742839 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 1008351 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1766100 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2417950 42315286 ~ 42316079 (-)

Expression


Co-expression Network