LOC110496213 (LOC106588411)


Basic Information

Item Value
gene id LOC110496213
gene name LOC106588411
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40029650 ~ 40034564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952773.1
GCCACAGCTGTGAGTGACAGAGCAGAGGCGGGCGGAAATGGCGTGATTCAAGCGCAAGGAAGCCTGGATGGCGCGCCAAATTTCAAAGGACTTCCTGGGGGAAAAGAACGCGAAAATCTCCGTTCAGCAAACAACGACGTTTAAATTGGACATAAATTATCAAAAGACTAAAGTATATAGACCGTTTGAAACAATCGGCGGCAGCAGCATCATATTTAGACAGTGGATAAGAGTTCAAGTGCGCCAGATTCGAGCCACTTTTGTGGAGctatgggcaactttgatgggggccacaatctgaactcatcatgagaggCCACAGTGATCAGGGCCTGGCCGTAGCCTTTCTGCAATTCTGACTTACATCAtaagagaaactgctgatgcacaaccacatttcgaaTTGCGTTGGTGTCTTCTAACTCTCAACGATTGAACCACCTCAAGCTGCCAGCACTAGCTCCCAGCCTTTTACGTGTCAATTTCTGAGTTACTTAGCTTAGTCAAATGTACACGGCCTTACAACTGATATTTCGGTGACATTACTCAGCAAATAACCGTGCAGGTTATAGATTGTATACGATATGTTTGACTGTTAAAACGAGAGTTTTAATGTTTAATCTGTTAAAATTCATTCAACACCACATACAAACAACCAAGCTTTTACCAGCATTAcagacagatgtttttgttaTCACATTCACTGACTTAAGTGCTATTTAAGCAATGGAAAGCTCTATGTAAGAAAGTAGCTGTTACTGACTGGGGTGGGGATCAGTTAGTCGCGGCCATGCTGTCCGGCGTCCAGCCGTGTTTCCAGCTGCTGAGAATCGGCTCGTCCTCTACGGATTCAGCCCGGGACCTGTACACGTTCCGGCCTGCGCTGACCCACTCCGTGTTCCGGCTGGGCCGTGAGGCAGAGCTGTGTGACGTCACACTGGACTCGACGTCTGTGTCTCGGATCCACGCCGAGCTGCATGCTGAGAGGGAAGCGGAGGGAGCAGCCGAGGGGGGCTGGAAGGTGCAGATAAAGGATCGGAGCAGCCATAGTACCTGGGTGAATGAGGTCCGGCTGCAGCCAGGTGTCCAATGGGAGCTCTCAGATGGTGACACGCTCACCTTCGGAGGCCAATCAGAGAGAGGAAGCCCAGAGTTCTACTTCCTCTTCCAGAAGGTTAGCGTGCGGCCGTTGGACTTCGACGCCATCACCATCCCAAAGGCCGGCACCTTCTCCTCCGACCTGAAGAACCGAATCAGAACGAGCCTGGACCGCAAGGCGGTGGCCAACTTGGATATCAACAGGGCGACCGTCATTCTGAATTCCATCGGAAGCCTGAGCAAGATGACTGGGACTCCTTGGACGTTTAAGAGGAGGTGTGACGGCAATATCACAGACGCAAGCTCCACCTTCTTTCCTTTTACATCCTTGGTCccgccctccacccctcctccctttccACCCACTACCTCTGTGGTCTCATCCAAGTCACTCCCGCCCTCATCCAAGAGCAGGCGCAAGTCAGCCCACACTGTCCTTCTGGAGGATGACAGCTCGGACGAGCCCGGGAACCACCGAAGAGTGAAAGACGGACCGAGTGGGACGAAGAGAAGGCGCCTCTACAAGTCAGAATCTGAGGGTTTCCACGCTCATTTACCCAAAACGGACCAGGATGTACGACGCCAGTTTGAACTGAAACACGTGCCTGTGCCCAAACCGGTCGCAAACTGTCACACCATCGTCGCTAACGGCAAACTCAACCATGTTTCCTTCAACATCAGTCAGAGGCGGGAGATTGACCCAAACAATCAAAGAACTGGCCCAAACGTCTCTGTGTTTCGCCAGCAGCATATTTTTCCGCCGCCATCCTCTGGGCGGGGAAGGCAACGGGCTCACAGCGCCCCAGTTTACTCCCCTGTGGTGGTGGGAGGAAAGACTTACACCCTGGGGTCTCCATCCTTGAGGATCTGCAAAGAGGATGGAGAACGGGCAGGGCAGTTTGCCAGATTTCACATCACCTCTGGcaaGCTGCGGGGCAGACCAAGGAAGCACCCTCCTCCGCggccctcccttccccctcctttgtcttcctcctcctcgtcgtCATCCTCTTCGAGCTCGTCGTCGTCGTCCTCAGAAGACGAGGTGGAGGGAGTGTCCCAGGGGGTGGAGCCATGTGCCGCACCTCGCTGCAGCCTGCCCCAGCAGGACACGGTGCAGTGGGTCCAGTGTGACGACTGCGACGCCTGGTACCACCTGGACTGCCTGCACCGCGACCGCAAGAACCTCCTGCTGGACCCCAACGCAGACTTCCACTGTGGCTGCCGCTGATACAGCAGGAGTGGGTCACAGACCCCTACACCAGAGTACACTTAATGTCTTAATCATACCACAATGAATTATGGGGGGGGGGAGAAATACACGTTATTCTTGTATAATGGGGATTATATGATCAAAATAGATGTTGTACAGTGTTTgtggaggtaaaaaaaaaaaaaaaaaagttgcgaCTGAGGctcttatgaacagtaggatgggtCTCGTACCTAATGGTTAGAGGCTGCCCTTAACTGACATGTTTCAAAGTGCTCATCTAAGCTCGCTCTGACGCTGAGCAACGGTTTGAGGAATTACAATGAAAGCTTGTACTTGGGTTAGCGCTGGTAACCCCGGGGACTGATATGAACTGAACTATTTTAGCCGCACACAGGCTACTCTGGTGAACAGTACAAGTCTCGAAACGAGTTGGCTGACAGTGACGGGCTGCAGATTTTCTAACTTCCTGTACGAAGCACTTTCATATTGGGTTGTGAGTAAACCCTGCTGTTGATGGGGCTAAATGAAGGTGGTATTGGGAGAATTCGCCAAATTCTTATCTGCCGTAACACAATGTGCATCGCAATGCTCTCATCGCACAAGGCGATCTGCTTGAGCTTGATTCTATCCGGTGCGGTAAAGATGTCCACTCAAAAAAAGATGAGCGTGGGTTTTCTGCTTTCATTCTCTGTTGTGTTGATGCCGACTTTATTTTGTTCTTCTGTCTGACGACTTCGATTCATATATCTAACGATGTATCCGTATCGGTCCAAAACACGACGAGATTTCAGCTGTGGAGCAGGGACTGCTTGTTCCCGCCCTACTATAGCTCACCAGTTGCTCCTTCCGGATCTTGATTGGCTGACGTAGGACGGCTGGAGTAAAAGCCGGCTCTCCAGGAAGGAGGGTTTGCCACACCTGATGTATGGTCACAAAAGACTTCACGCCGTCTTCACTTTCACGCCGTCTTCACGCTCGCGGGAGAGCGTTACAGTTTGGATGTTTTCTCAACGTTATtagggaaaaaaataaaatctatttaaaaaTGT
>TU1771621
TGAGGctcttatgaacagtaggatgggtCTCGTACCTAATGGTTAGAGGCTGCCCTTAACTGACATGTTTCAAAGTGCTCATCTAAGCTCGCTCTGACGCTGAGCAACGGTTTGAGGAATTACAATGAAAGCTTGTACTTGGGTTAGCGCTGGTAACCCCGGGGACTGATATGAACTGAACTATTTTAGCCGCACACAGGCTACTCTGGTGAACAGTACAAGTCTCGAAACGAGTTGGCTGACAGTGACGGGCTGCAGATTTTCTAACTTCCTGTACGAAGCACTTTCATATTGGGTTGTGAGTAAACCCTGCTGTTGATGGGGCTAAATGAAGGTGGTATTGGGAGAATTCGCCAAATTCTTATCTGCCGTAACACAATGTGCATCGCAATGCTCTCATCGCACAAGGCGATCTGCTTGAGCTTGATTCTATCCGGTGCGGTAAAGATGTCCACTCAAAAAAAGATGAGCGTGGGTTTTCTGCTTTCATTCTCTGTTGTGTTGATGCCGACTTTATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952773.1 False 3363 mRNA 0.51 5 40029650 40034564
TU1771621 True 520 lncRNA 0.46 1 40029984 40030503

Neighbor

gene id symbol gene type direction distance location
pvrl2l LOC106588412 coding downstream 10109 39933644 ~ 40019541 (-)
atp1a3a LOC106588414 coding downstream 132314 39864987 ~ 39897336 (-)
LOC110496210 LOC106588415 coding downstream 204562 39755539 ~ 39825088 (-)
LOC110496209 LOC106588416 coding downstream 306114 39697624 ~ 39723536 (-)
LOC110496816 LOC106588265 coding downstream 340900 39642841 ~ 39688750 (-)
LOC110496214 LOC106588410 coding upstream 3979 40038543 ~ 40048437 (-)
LOC110496215 tbb5 coding upstream 21830 40056394 ~ 40063549 (-)
LOC110496218 LOC106588408 coding upstream 45651 40080215 ~ 40093772 (-)
LOC110496219 NA coding upstream 52680 40087244 ~ 40087790 (-)
LOC110496222 LOC106588403 coding upstream 76449 40111013 ~ 40122871 (-)
G1548260 NA non-coding downstream 4208 40025236 ~ 40025442 (-)
G1548257 NA non-coding downstream 7652 40021788 ~ 40021998 (-)
G1547609 NA non-coding downstream 104657 39924639 ~ 39924993 (-)
G1547561 NA non-coding downstream 171787 39857659 ~ 39857863 (-)
G1547558 NA non-coding downstream 173329 39856095 ~ 39856321 (-)
G1548270 NA non-coding upstream 18811 40053375 ~ 40053601 (-)
G1548317 NA non-coding upstream 120274 40154838 ~ 40169209 (-)
G1548323 NA non-coding upstream 136295 40170859 ~ 40182138 (-)
G1548324 NA non-coding upstream 136925 40171489 ~ 40172837 (-)
G1548331 NA non-coding upstream 172075 40206639 ~ 40207042 (-)
LOC110496208 LOC106588417 other downstream 398552 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1241849 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1255966 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1353621 38674378 ~ 38676029 (-)
G1548367 NA other upstream 351406 40385970 ~ 40391883 (-)
G1548517 NA other upstream 605611 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 871123 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1628872 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2280722 42315286 ~ 42316079 (-)

Expression


Co-expression Network