LOC110496214 (LOC106588410)


Basic Information

Item Value
gene id LOC110496214
gene name LOC106588410
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40038543 ~ 40048437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571986.2
TATGATTCATTGGTATCTGCTCAGTTCTAGCGGTTTTTTATTTTACCTGGAAATGTATGGGTTAAATTTGACAGTTTTTTCGTTTGCTGGCTGGTATTTTGGCTGTTTTTTTATGCATGTCTAACAGCTATATCAAATATGCGTGATTTAGGGCGTGTTACCGGTAATAACGCAGCAGAATCGGAGATTCAATCAAGATGAAAATAATTGGTGTTGCTGTGTTTGGAGCCATGTTCTGCACTGTTCTGACTGCTTCCCTGAAAGTCAAAGAAGAACACAGGATTGCTTTTTTCGGCGAGGATGTGCACATCCCACTCCCATCCCTAGACAGCACTGAGGTTCTCTTCAAGCCCGCCTCCAATCCAACCGCTGAGGTGGTCCTCATGAGGGACGGGCGGGTGGTGGGCCACCGGGCCCAGCTCAACTCCCTCAAGCACCTCATCCTGGAGGATGTGGGGGAGGAGGACGAGGGCATGTACGTGATCAAGAACACCGAGGCGCCTGCCGATGTCAAAcacatcctcctcctcgtcaGGGATTGCGCGCTGGAGCAGGTGGTTAAGTACGGTGAGACATACCACATCCCGCTCAGCGACATCTTGGGCCCTATCACCCTGGAGTTCAGGCCCAGTCAAGCCCAGGCCAATCAGACCACGGAGCCACCGGCGGTGGTGCTGCTCAACCAGACTTCCATCCCAGCGGAAGAGTACAAGGGCCGTCTGAGTGTGTCCGAGAAAAGGGTGACTCTAAGCATGGTGCAGGGGACAGACGAAGGTAGCTTCACCGTACTGGACCGCGACGGGAGGGTCAGGAGGAGGTCATGCCTGAACgtgaaagAGCACCAGAACTTCGTCCACCTATCATATGGCAGTACTTTGAAGATCAACCTGTTTGTGGACCACACCAAAGTCAACCTCCTGTACACTCCAGACTGGGACCGGAAGGACCGGGTCATACTGGAGCAAGGAGAGCTGGTGGTGCCGTTGGACCCTTCACTGGACGGCAGGCTGACTGTAGAAGGCTCCATGTGCATTCTGGAGAGGGTCCGGTTCAGTGACACAGGGCTCTTCAGAGTGACAGACCTGTTGGGGTTCCCTGTGACCAACATCTACCTGGAGGTAGAAGcTTATAAGTTACCCGCGCTGTATGTTGCAATCCTCTCCTTACTGGGCTTCCTGGTCCTCCTCTTGCTGGTGTGCCTGTTCTCCTGCCTGACCAGTGTGCGCCGTCGGGCGGAGAAGGCGAGGCAAATTGCCCTCATCGCCCAGCAGGCGGGCAAGGGGGATGGAGACGCATTCGTCAAGGTTGTTCAAGAGGCCTATACGCGGTTCGCTGAGGAGTCCACTTTGACGTCTACGTGGGACAACAGCAATGCCACAGAAAGCACGGAGGTCACTATTAAGGGTCTGGAGGTATCTAAAGCAGGCCGCTACCACACTCTCTCCTCGGACAAGAACTTCCTGGAGATGAGCGACTCGGGGGTAGAGTTCAACTCCTCCGGCCTCCCGTTGGACAGCGAATACGAGACGGACGTGCCCCAGACCTTCACCTCCCACAAGCTGCTCCTCAACAACTCTGACAGCGTGGCAGCCACTGTCATCCCAGAGGGAGATCAAAGCGCCAACCGGAACCCCGACTCGGCCATGAGCCCCAGCCTTGTGACCCAGGCCCGCTCTGAGGCCGACGCCCCTGAAGAAGACCTGATGGGTGACAGCACGCCAGAAATGACATCCAGGGGCGCCGAGCTGGCTGGAGGACTTAAGGCAGCCGACAGTGTTGCTGAGCCTGGCGATTAAGCAAGCAGCCCATTGATTCCCAGTGCCACCGCAGAGAACACCATCACCTGAGAGCACCTGCATTGTATTCCTAAAAGTCAGACACAAACCACCGGACACCCTAACAATCTTTACTCTTCAGCCTCAATTACTcccccactcacacagacacgaCCCAAATCCCGATCactgcttctttttttttaacctaaaGCTACAAAAAATTACTTGGTGTAAAAATAGCCAGTCTAAATGCGCTAGACTTTCTAAAGAGGAAAAATACAAGAACTTAGCTCATTAGAAAACATTAATTCTGTGCATACAGGAAATGCATGTGTAACGGTGTTAAGAGCTAGGTTGAAATGTCGCGGATGGAGCCATCCACTTGGCACCTTCTGGGTGGATCAACCCGTTGGAATGTTGTCAAGGAGGGCGGTCACGTGTGTTGTGAAGCAGAGGATCACTAGTTCGAGCCCAGTATGTGGCAGTTGGACTGTGGAGGAAGCTAAGCTGTTAACAGCACACTGACCCCCGTTACACATGTTTTTAAATTAGACTTAAAGCTAGAATGTATCCTTAGCTGGCCCAAGAGGGAATTGATAGTATTAATTACTGATAGTACTAAGTATTAAGAACCACAGACTCAGAGATAATATCTAAGATAACTTGGTGGACTAAGGGAAAATGCAAGATTAAAATGTCCAAAAGGAACGAGTGCACACTGATATCaaagtaaaaaatgttttaaataatccTGTAAAAATGTATCCCAGATTTCCTATAATGACAAAAATGACAGATCTACAACATATTTAATCCATCTTTCTTATTAGCATTGAATGTCCCTACCACTGATACTATGTATGTGGGGCCATAGACATAGCAGCAAAATGTATGACATAGGCCCAGGGTAATAGACCAACttaattttacaaataaaattgtaataCTAGACTAACAAAACCAATAAAGACAACTTTATTTTCTAAAAAAATATTGGTAAATAACACTTCTGACAACCACAAGCCCATAGTTTCTGACTTAGGCCTATACCGCTACAATTTCATTACATGACAGAAATTACAGGCAAGGCTTTGGCACCAACTCAGAGAAAGCGCTTGTCTCAGCATATAGCCTCTATAGAGAGCTAATTCTTGATAACTGATACAAGCCTCGTAGATTGAATAACACCATGCTATGCAAGAAAGCTTGTAGTGTCCCTGGGCATGTAACAACGTTTCCAAATCTCTGCCACTTTTGATGACATCATCCAGTAAAACACATGTTTTAAACATCCCTTAGCTTGCAACACAAATGACCCGGAACTAATACAACGGCAACTTCACATCACTCCATTTTGAACCCATCTACATAAGGGCATGTTTCTCATTACAACCCCAGCCACTGCAGAAAAAGCCTTGGAACAGGGACTTCTGGTTGGAAGGGACCTAAACATTTGGATTGTTGCCCTTTAATAAAGACAGACTCGGGAGTGATAAGATGATGAGGCAGACCTATTGACAATGAATGACCTGCATGATGTCACCCTTCCTTATTtttgtatccaattggtagttaccgtcttgtctcatcgctgcaactcccatatggacttgggagaggcgaaggtcgagagcacgtcctccgaaacacaacccaacagcactgcttcttgacacaatgc
>XM_021571985.2
CCTCCGGAGTCCGGATTCTAACGAAATTGCACGAGCTCCACCGATCATTAATAGACCACAAACCGACACCTACCGAGGCTCTCCAGATCATCCCGATTCGTAACAGCATTGAAGTCCCTTTATTTGACGGGttgggggtgagggagagggggacgatattaagaagaaaaaaataataatttagcaGAAAACCCTACTTCCTATGCACCGCCCGTCCCATCTGCTGTTTTCGGATCCAAGCCTGTCTGAAAGAGATTCAATCAAGATGAAAATAATTGGTGTTGCTGTGTTTGGAGCCATGTTCTGCACTGTTCTGACTGCTTCCCTGAAAGTCAAAGAAGAACACAGGATTGCTTTTTTCGGCGAGGATGTGCACATCCCACTCCCATCCCTAGACAGCACTGAGGTTCTCTTCAAGCCCGCCTCCAATCCAACCGCTGAGGTGGTCCTCATGAGGGACGGGCGGGTGGTGGGCCACCGGGCCCAGCTCAACTCCCTCAAGCACCTCATCCTGGAGGATGTGGGGGAGGAGGACGAGGGCATGTACGTGATCAAGAACACCGAGGCGCCTGCCGATGTCAAAcacatcctcctcctcgtcaGGGATTGCGCGCTGGAGCAGGTGGTTAAGTACGGTGAGACATACCACATCCCGCTCAGCGACATCTTGGGCCCTATCACCCTGGAGTTCAGGCCCAGTCAAGCCCAGGCCAATCAGACCACGGAGCCACCGGCGGTGGTGCTGCTCAACCAGACTTCCATCCCAGCGGAAGAGTACAAGGGCCGTCTGAGTGTGTCCGAGAAAAGGGTGACTCTAAGCATGGTGCAGGGGACAGACGAAGGTAGCTTCACCGTACTGGACCGCGACGGGAGGGTCAGGAGGAGGTCATGCCTGAACgtgaaagAGCACCAGAACTTCGTCCACCTATCATATGGCAGTACTTTGAAGATCAACCTGTTTGTGGACCACACCAAAGTCAACCTCCTGTACACTCCAGACTGGGACCGGAAGGACCGGGTCATACTGGAGCAAGGAGAGCTGGTGGTGCCGTTGGACCCTTCACTGGACGGCAGGCTGACTGTAGAAGGCTCCATGTGCATTCTGGAGAGGGTCCGGTTCAGTGACACAGGGCTCTTCAGAGTGACAGACCTGTTGGGGTTCCCTGTGACCAACATCTACCTGGAGGTAGAAGcTTATAAGTTACCCGCGCTGTATGTTGCAATCCTCTCCTTACTGGGCTTCCTGGTCCTCCTCTTGCTGGTGTGCCTGTTCTCCTGCCTGACCAGTGTGCGCCGTCGGGCGGAGAAGGCGAGGCAAATTGCCCTCATCGCCCAGCAGGCGGGCAAGGGGGATGGAGACGCATTCGTCAAGGTTGTTCAAGAGGCCTATACGCGGTTCGCTGAGGAGTCCACTTTGACGTCTACGTGGGACAACAGCAATGCCACAGAAAGCACGGAGGTCACTATTAAGGGTCTGGAGGTATCTAAAGCAGGCCGCTACCACACTCTCTCCTCGGACAAGAACTTCCTGGAGATGAGCGACTCGGGGGTAGAGTTCAACTCCTCCGGCCTCCCGTTGGACAGCGAATACGAGACGGACGTGCCCCAGACCTTCACCTCCCACAAGCTGCTCCTCAACAACTCTGACAGCGTGGCAGCCACTGTCATCCCAGAGGGAGATCAAAGCGCCAACCGGAACCCCGACTCGGCCATGAGCCCCAGCCTTGTGACCCAGGCCCGCTCTGAGGCCGACGCCCCTGAAGAAGACCTGATGGGTGACAGCACGCCAGAAATGACATCCAGGGGCGCCGAGCTGGCTGGAGGACTTAAGGCAGCCGACAGTGTTGCTGAGCCTGGCGATTAAGCAAGCAGCCCATTGATTCCCAGTGCCACCGCAGAGAACACCATCACCTGAGAGCACCTGCATTGTATTCCTAAAAGTCAGACACAAACCACCGGACACCCTAACAATCTTTACTCTTCAGCCTCAATTACTcccccactcacacagacacgaCCCAAATCCCGATCactgcttctttttttttaacctaaaGCTACAAAAAATTACTTGGTGTAAAAATAGCCAGTCTAAATGCGCTAGACTTTCTAAAGAGGAAAAATACAAGAACTTAGCTCATTAGAAAACATTAATTCTGTGCATACAGGAAATGCATGTGTAACGGTGTTAAGAGCTAGGTTGAAATGTCGCGGATGGAGCCATCCACTTGGCACCTTCTGGGTGGATCAACCCGTTGGAATGTTGTCAAGGAGGGCGGTCACGTGTGTTGTGAAGCAGAGGATCACTAGTTCGAGCCCAGTATGTGGCAGTTGGACTGTGGAGGAAGCTAAGCTGTTAACAGCACACTGACCCCCGTTACACATGTTTTTAAATTAGACTTAAAGCTAGAATGTATCCTTAGCTGGCCCAAGAGGGAATTGATAGTATTAATTACTGATAGTACTAAGTATTAAGAACCACAGACTCAGAGATAATATCTAAGATAACTTGGTGGACTAAGGGAAAATGCAAGATTAAAATGTCCAAAAGGAACGAGTGCACACTGATATCaaagtaaaaaatgttttaaataatccTGTAAAAATGTATCCCAGATTTCCTATAATGACAAAAATGACAGATCTACAACATATTTAATCCATCTTTCTTATTAGCATTGAATGTCCCTACCACTGATACTATGTATGTGGGGCCATAGACATAGCAGCAAAATGTATGACATAGGCCCAGGGTAATAGACCAACttaattttacaaataaaattgtaataCTAGACTAACAAAACCAATAAAGACAACTTTATTTTCTAAAAAAATATTGGTAAATAACACTTCTGACAACCACAAGCCCATAGTTTCTGACTTAGGCCTATACCGCTACAATTTCATTACATGACAGAAATTACAGGCAAGGCTTTGGCACCAACTCAGAGAAAGCGCTTGTCTCAGCATATAGCCTCTATAGAGAGCTAATTCTTGATAACTGATACAAGCCTCGTAGATTGAATAACACCATGCTATGCAAGAAAGCTTGTAGTGTCCCTGGGCATGTAACAACGTTTCCAAATCTCTGCCACTTTTGATGACATCATCCAGTAAAACACATGTTTTAAACATCCCTTAGCTTGCAACACAAATGACCCGGAACTAATACAACGGCAACTTCACATCACTCCATTTTGAACCCATCTACATAAGGGCATGTTTCTCATTACAACCCCAGCCACTGCAGAAAAAGCCTTGGAACAGGGACTTCTGGTTGGAAGGGACCTAAACATTTGGATTGTTGCCCTTTAATAAAGACAGACTCGGGAGTGATAAGATGATGAGGCAGACCTATTGACAATGAATGACCTGCATGATGTCACCCTTCCTTATTtttgtatccaattggtagttaccgtcttgtctcatcgctgcaactcccatatggacttgggagaggcgaaggtcgagagcacgtcctccgaaacacaacccaacagcactgcttcttgacacaatgc

Function

NR:

description
uncharacterized protein LOC110496214 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571986.2 False 3459 mRNA 0.48 9 40038543 40048166
XM_021571985.2 True 3527 mRNA 0.49 9 40038543 40048437

Neighbor

gene id symbol gene type direction distance location
LOC110496213 LOC106588411 coding downstream 3979 40029650 ~ 40034564 (-)
pvrl2l LOC106588412 coding downstream 19002 39933644 ~ 40019541 (-)
atp1a3a LOC106588414 coding downstream 141207 39864987 ~ 39897336 (-)
LOC110496210 LOC106588415 coding downstream 213455 39755539 ~ 39825088 (-)
LOC110496209 LOC106588416 coding downstream 315007 39697624 ~ 39723536 (-)
LOC110496215 tbb5 coding upstream 7957 40056394 ~ 40063549 (-)
LOC110496218 LOC106588408 coding upstream 31778 40080215 ~ 40093772 (-)
LOC110496219 NA coding upstream 38807 40087244 ~ 40087790 (-)
LOC110496222 LOC106588403 coding upstream 62576 40111013 ~ 40122871 (-)
tapbp.1 LOC100136299 coding upstream 77128 40125565 ~ 40130195 (-)
G1548260 NA non-coding downstream 13101 40025236 ~ 40025442 (-)
G1548257 NA non-coding downstream 16545 40021788 ~ 40021998 (-)
G1547609 NA non-coding downstream 113550 39924639 ~ 39924993 (-)
G1547561 NA non-coding downstream 180680 39857659 ~ 39857863 (-)
G1548270 NA non-coding upstream 4938 40053375 ~ 40053601 (-)
G1548317 NA non-coding upstream 106401 40154838 ~ 40169209 (-)
G1548323 NA non-coding upstream 122422 40170859 ~ 40182138 (-)
G1548324 NA non-coding upstream 123052 40171489 ~ 40172837 (-)
G1548331 NA non-coding upstream 158202 40206639 ~ 40207042 (-)
LOC110496816 LOC106588265 other downstream 349862 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 407445 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1250742 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1264859 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1362514 38674378 ~ 38676029 (-)
G1548367 NA other upstream 337533 40385970 ~ 40391883 (-)
G1548517 NA other upstream 591738 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 857250 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1614999 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2266849 42315286 ~ 42316079 (-)

Expression


Co-expression Network