LOC110496215 (tbb5)


Basic Information

Item Value
gene id LOC110496215
gene name tbb5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40056394 ~ 40063549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571987.2
GCCAATCAAGATTGGGATTCCGAAGACCGTGACCAATCATTAGCGCAAGCCTCGGTTTGGGCACGATCCAGACTTATAAATTCTTTGTCCCGCCTTGCTCAAAGGTGGCATCCACATACTTCACAGTggtcagtgggttaactgtggcAATAGCAGCACTCCACATCTTCGCTTGTATTTTCTATTATAACTAGCATACAGAATGAGGGAAATCGTGCACATTCAGGCCGGCCAGTGCGGTAACCAGATTGGGGCCAAGTTCTGGGAGGTGATCAGCGATGAACATGGCATCGACCCAACAGGCACCTACCACGGAGACAGCGACCTGCAGCTGGACAGGATCAGTGTCTACTACAACGAGGCTTCAGGTGGCAAGTATGTACCCAGAGCGGTCCTAGTGGACCTGGAGCCCGGCACCATGGATTCTGTCAGATCCGGACCCTTCGGACAGATCTTCAGACCAGACAACTTTGTGTTTGGTCAAAGCGGCGCAGGAAACAACTGGGCAAAGGGCCACTACACTGAGGGAGCAGAGCTGGTGGACTCAGTCCTGGATGTGGTGAGGAAAGAAGCTGAGAGCTGCGACTGCCTCCAGGGATTCCAGCTCACCCACTCCCTGGGTGGGGGCACTGGCTCGGGCATGGGCACCCTGCTCATCAGCAAGATCCGTGAAGAGTACCCCGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCCCCTAAAGTGTCAGACACGGTGGTGGAGCCCTACAATGCCACCCTCTCGGTTCACCAACTTGTAGAGAACACGGACGAGACCTTCTGCATTGACAACGAGGCTCTCTACGACATCTGCTTCCGGACCCTTAAACTCACCACGCCGACTTACGGAGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGAGTGACCACCTGCCTGCGTTTCCCCGGCCAGCTCAACGCCGACCTCCGTAAATTGGCCGTCAACATGGTGCCTTTCCCCCGTCTCCACTTCTTCATCCCCGGCTTCGCCCCCCTCACCAGCAGGGGGAGCCAGCAGTACCGTGCCCTCACCGTGCCGGAACTCACCCAGCAAGTGTTCGACGCCAAGAACATGATGGCCGCATGTGACCCGCGTCACGGTCGCTACCTCACTGTCGCCGCTGTCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTCAACGTCCAGAACAAGAACAGCAGCTACTTCGTTGAATGGATCCCCAACAACGTCAAGACCGCCGTCTGCGACATTCCTCCAAGAGGCCTCAAAATGGCCGTCACCTTCATCGGCAACAGCACGGCCATCCAGGAGCTGTTCAAGCGTATCTCTGAGCAGTTCACCGCCATGTTCCGCCGCAAGGCCTTCCTCCATTGGTACACCGGAGAGGGCATGGACGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACCGCCGAGGAGGAAGGTGAGTTTGAGGAGGAGGCTGAGGAGGACGCTTAAAGACGGAGTGAAGCAACATGAGCGAGGTGGAAGAATGAAGAAAAGTCCTACAGAAAGCCGGAAAATAACAAAATACCACAAAAAGAGGAAAACAAGAAAAGTGCCAAAAGAAAACCGGAGAAATACTATAGAACGTAGCTGAGAAGAGGAGGGGCCCAATTGCACACCCAGAAATGGAGGATCAAATCTGAAAATGGTTGAAATGGCTCAACGAGAACAGAATGACTGAAGAATGTGACTGGACAAGGGAGAATGAATGTAagtaagagaggaggagaggagtgacaaGCAGCATTATGAACAAATAAACCGGACGCAGTCTGCATTCCATTTACTGTGACACCATTTAATAAATAAGTACGTTAAGAAACAAAATTGTTGAAAGAAAGTTAAAGAAGAAGCCTGTGCCTATGACAAAATTGTTCCTGTTATTTTCagtgttatttttgttgttgccatGATTTTGCATTTAATCATGTCACAAATAAATGTGAATGTGACCACATAAGCACTACAGGACCTCTCACCCCACAGTTCTGATTTTGAGACTATGGTTATTAacttatagcctggtcccagatctgtttgtgctgtcttgccaccAACTTCTATGGTCATTGCCACTGCCACGTCATtggcaaacagatctgggatcaaaCTAATTAACTTCTGAACGGTGGCTCGATTCTGGCCTGACTTTAATGAAGGTGTCTGTGCCACCTGGAGCCGCCCTCCCCAGGACGCCAACCAACGTCTGTGAATACAGGATGACATAGACAAAGATGGGATGAAAATGAATCGATGGATTTAGTTTGATAGTGCCAATGGAACTTTATAACAATATCATGGCAATGACTAGTGAACATGACTAGTGAACATGTGTTGGGTTCTACCAGTATTATCAATCTCAGTGATAGTGGAACTGGAACCTAATGGGGAGAGGTCCAGGAATTGTATTCCATTTGACCATAGCAAGTTTTTGAAACAAGATTATCTGAAGGAACCTCTGCAAATGTGTGTGTACAGAACATTTTAgtaaatgtttacatttttaacCACTATTCACATAGATTGTCATTGTTATTTTAGGTCCAAGCCAGGTTATCTATGTCCAAACCCGGCTATAGTGTCAGGTATTGTTGACATCTGTACTGCACTATGAAGGGATGAAACTGCAACTCTCTTGTATGcgttttctttgttttttttctaTTCTGATGATTAAAAAAATGATCTCTGAGAAAGTGAAAAGCAAGGTGCCCCTGGGGAGAAATAAAAAGTCCTTTTTAGAAAA

Function

NR:

description
Tubulin beta chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571987.2 True 2831 mRNA 0.49 4 40056394 40063549

Neighbor

gene id symbol gene type direction distance location
LOC110496214 LOC106588410 coding downstream 7957 40038543 ~ 40048437 (-)
LOC110496213 LOC106588411 coding downstream 21830 40029650 ~ 40034564 (-)
pvrl2l LOC106588412 coding downstream 36853 39933644 ~ 40019541 (-)
atp1a3a LOC106588414 coding downstream 159058 39864987 ~ 39897336 (-)
LOC110496210 LOC106588415 coding downstream 231306 39755539 ~ 39825088 (-)
LOC110496218 LOC106588408 coding upstream 16666 40080215 ~ 40093772 (-)
LOC110496219 NA coding upstream 23695 40087244 ~ 40087790 (-)
LOC110496222 LOC106588403 coding upstream 47464 40111013 ~ 40122871 (-)
tapbp.1 LOC100136299 coding upstream 62016 40125565 ~ 40130195 (-)
trnaa-ugc-138 NA coding upstream 123593 40187142 ~ 40187215 (-)
G1548270 NA non-coding downstream 2793 40053375 ~ 40053601 (-)
G1548260 NA non-coding downstream 30952 40025236 ~ 40025442 (-)
G1548257 NA non-coding downstream 34396 40021788 ~ 40021998 (-)
G1547609 NA non-coding downstream 131401 39924639 ~ 39924993 (-)
G1548317 NA non-coding upstream 91289 40154838 ~ 40169209 (-)
G1548323 NA non-coding upstream 107310 40170859 ~ 40182138 (-)
G1548324 NA non-coding upstream 107940 40171489 ~ 40172837 (-)
G1548331 NA non-coding upstream 143090 40206639 ~ 40207042 (-)
G1548376 NA non-coding upstream 171571 40235120 ~ 40239085 (-)
LOC110496816 LOC106588265 other downstream 367713 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 425296 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1268593 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1282710 38768097 ~ 38773684 (-)
LOC110496175 LOC104924380 other downstream 1380365 38674378 ~ 38676029 (-)
G1548367 NA other upstream 322421 40385970 ~ 40391883 (-)
G1548517 NA other upstream 576626 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 842138 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1599887 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 2251737 42315286 ~ 42316079 (-)

Expression


Co-expression Network