LOC110496217 (LOC106569969)


Basic Information

Item Value
gene id LOC110496217
gene name LOC106569969
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40065260 ~ 40077268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571988.2
ACGCTTTTGACGGGAAGAGCTATAACGGGACAGAAGCTTCATATATACATACTGGCATTGGACAGACGACAGCAAGAATAACACTGCTGTATTTTGAGAGCCAAAAACAGTATTGTTGCAACGCATCTATACATTTGCATTCTGCATTAGTTCATTCTGTCAAATTGCATCTGAGGAAGAAAAACATGTTCTACACGTGTGGTCCAAATGAGGCTATGGTGGTGTCAGgGTGCCTCCGTTCTCCTCCAGTAATGATTGCTGGAGGCAGAGTGTTTGTGCTTCCCTGTTTTCAGAAGATCCAGAGGATCTCCCTGAACATTCTGACGCTGAGCGTGAAGAGTGAGAAAGTCTACACCCGACGTGGGGTTCCCATCTCGGTCACTGGTATTGCCCAGATGAAGATCCAGGGGCAGAACAAGGAGATGCTGGCCGCAGCCTGTCAGATGTTCATGGGGAAGTCAGAGGGCGAGATCGCCCAAATCGCCCTGGAGACGCTGGAGGGCCACCAGAGGGCCATCATCGCCCACCTGACTGTGGAGGAGATCTACAGGGACCGTAAGAAGTTCTCAGAGGAGGTGTTCAAGGTGGCCTCGTCCGACCTGTTCAACATGGGCATCAGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGACTACCTCCACTCCCTGGGGAAGTCCAGGACCGCCCAGGTGCAGAAAGACGCCCGCATCGGAGAGGCCCAGTTCAAGCGGGATGCTGTGATCAGGgagGCCCATGCCAAGCAGGAGAAGATCTCAGCCCAGCACGTCAATGAGATCCAGATGGCCATGGCTCAGAGGGACTATGAGCTGAAGAAAGCATCCTACGACATCGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCCTACCAGCTACAGGTGGCCAAGACCAAGCAGCTCATCGAGGAGGAGAAGATGCAGGTCCAGGTGGTGGAGCGCTCTCAGCAGATCATGCTCCAGCAGCAGGAGATCACCCGCAAGGAGAAGGAGCTGGAGGCCAAGGTTAAGAAGCCTGCTGAGGCCACGAGATACCAAATCGAGAAGCTGGCCGAGGCCCAGCGTGCACAGCTCATTAtggaggctgaggctgaggcagAGTCCATTAGGaTTAAGGGTGATGCGGAGGCCTTTGCTGTGGAGGCGAAGGGGAGAGCCGAGGCGGAGCAGATGGCCAAGAAGGCCGAAGCCTTCCAGCAGTACAAGGAGGGAGCCATGGTGGACATGCTGCTGGAGCAACTACCACTAATGGCGGAAGAGATCAGCAGGCCTCTGGCGCAGGCTCAGAAGATCACCATGATTTCCAGCGGGGGTACCGAGGTGGGCGCGGCCAAGCTCACAGGAGAGGTGCTAGACATCATGACCCGCCTTCCGGCGACGGTGGAGAAACTGACGGGAGTCAACATCTCACAGGTGACAACTCATACGGTCTGAGGACTCCGGTGCTCAGGCAAACCTATTTCACAACCCTGCCTACTACCACAGCCTTTAACTCTCTCCTCAAGTATGTTATGCCAAAAAAAACATATGGTGCCCTACGTAATTATTGGGACCGTGAAGCATTTTTATCTTCTTTTGGCTCTATTCTCCAAaagtttggatttgaaatcaaacaatgactGAGGTTAACGTGCAGACTGTCagattttcatccatatcgggtgaaccgtttagaaattgcATATtgcattttggagtcacttttattgtagataagaatataata
>TU1770926
TCATATATACATACTGGCATTGGACAGACGACAGCAAGAATAACACTGCTGTATTTTGAGAGCCAAAAACAGTATTGTTGCAACGCATCTATACATTTGCATTCTGCATTAGTTCATTCTGTCAAATTGCATCTGAGGAAGAAAAACATGTTCTACACGTGTGGTCCAAATGAGGCTATGGTGGTGTCAGGTCCATTCTCtaacccagtgtttcccaaccctggtcctccagttcCTGTAGTGCACATTTTACTTGTAGCCCTTGACAAACACACCTtgttcaactcattgagggcttgatgattagttgacaagttgaatcaagtgtgcttgtccagggttactcgaggaccagggttgtGAAACAGTGTAAACATGTACAATTAAAGAGCTGTAGAATGGTAATAATACTCTCATGTGTATCt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571988.2 False 1752 mRNA 0.52 13 40065260 40077268
TU1770926 True 425 lncRNA 0.41 2 40065298 40066327

Neighbor

gene id symbol gene type direction distance location
LOC118941156 ssl-2 coding upstream 443075 39619719 ~ 39622185 (+)
LOC118940977 NA coding upstream 478398 39585870 ~ 39586862 (+)
LOC110496201 LOC106588424 coding upstream 708136 39326837 ~ 39357124 (+)
LOC110496196 LOC106588428 coding upstream 835339 39221315 ~ 39229921 (+)
LOC110496194 LOC106588429 coding upstream 847052 39208209 ~ 39218208 (+)
kifc1 LOC106588407 coding downstream 18560 40095828 ~ 40101459 (+)
LOC110496221 LOC106588406 coding downstream 26463 40103731 ~ 40110006 (+)
LOC110496223 NA coding downstream 52192 40129460 ~ 40142425 (+)
LOC110496224 NA coding downstream 86873 40164141 ~ 40199663 (+)
LOC118941157 NA coding downstream 108972 40186240 ~ 40190407 (+)
G1547682 NA non-coding upstream 10834 40054197 ~ 40054426 (+)
G1547588 NA non-coding upstream 158505 39903628 ~ 39906755 (+)
G1547587 NA non-coding upstream 159004 39903222 ~ 39906256 (+)
G1547400 NA non-coding upstream 193795 39868857 ~ 39871465 (+)
G1547384 NA non-coding upstream 227487 39837449 ~ 39837773 (+)
G1547711 LOC107394864 non-coding downstream 8689 40085957 ~ 40088021 (+)
G1547743 NA non-coding downstream 124641 40201909 ~ 40202458 (+)
G1547745 NA non-coding downstream 126612 40203880 ~ 40204439 (+)
G1547747 NA non-coding downstream 128172 40205440 ~ 40205726 (+)
G1547652 LOC106588410 other upstream 24666 40035517 ~ 40040594 (+)
G1547334 LOC107666349 other upstream 303757 39761213 ~ 39761503 (+)
G1546817 LOC106588418 other upstream 595895 39467454 ~ 39469365 (+)
G1546713 LOC106569985 other upstream 692779 39358411 ~ 39372481 (+)
G1546641 NA other upstream 919008 39133119 ~ 39146252 (+)
G1547788 NA other downstream 249207 40326475 ~ 40327181 (+)
G1547817 NA other downstream 349840 40427108 ~ 40429520 (+)
G1547834 rps18 other downstream 393101 40469109 ~ 40471582 (+)

Expression

LOC110496217(LOC106569969) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110496217(LOC106569969) Expression in each Bioproject

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LOC110496217(LOC106569969) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network