Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110496227 |
| gene name | LOC106569958 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 40210284 ~ 40213780 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| proteasome subunit beta type-7-like |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02739 | PSMB7; 20S proteasome subunit beta 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036952782.1 | True | 1188 | mRNA | 0.46 | 8 | 40210284 | 40213780 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118941158 | LOC106588400 | coding | downstream | 1082 | 40208464 ~ 40209202 (-) |
| trnaa-ugc-138 | NA | coding | downstream | 23069 | 40187142 ~ 40187215 (-) |
| tapbp.1 | LOC100136299 | coding | downstream | 80089 | 40125565 ~ 40130195 (-) |
| LOC110496222 | LOC106588403 | coding | downstream | 87413 | 40111013 ~ 40122871 (-) |
| LOC110496218 | LOC106588408 | coding | downstream | 116512 | 40080215 ~ 40093772 (-) |
| LOC110496231 | LOC106569953 | coding | upstream | 105265 | 40319045 ~ 40369178 (-) |
| LOC101268904 | LOC106588394 | coding | upstream | 178840 | 40392620 ~ 40416084 (-) |
| LOC100136269 | LOC106588393 | coding | upstream | 203795 | 40417575 ~ 40429473 (-) |
| LOC110496236 | NA | coding | upstream | 231475 | 40445255 ~ 40455548 (-) |
| rps18 | LOC107726165 | coding | upstream | 255329 | 40469109 ~ 40471565 (-) |
| G1548331 | NA | non-coding | downstream | 3242 | 40206639 ~ 40207042 (-) |
| G1548323 | NA | non-coding | downstream | 28146 | 40170859 ~ 40182138 (-) |
| G1548324 | NA | non-coding | downstream | 37447 | 40171489 ~ 40172837 (-) |
| G1548317 | NA | non-coding | downstream | 41075 | 40154838 ~ 40169209 (-) |
| G1548270 | NA | non-coding | downstream | 156683 | 40053375 ~ 40053601 (-) |
| G1548376 | NA | non-coding | upstream | 21340 | 40235120 ~ 40239085 (-) |
| G1548377 | NA | non-coding | upstream | 25772 | 40239552 ~ 40239752 (-) |
| G1548380 | NA | non-coding | upstream | 31572 | 40245352 ~ 40245648 (-) |
| G1548381 | NA | non-coding | upstream | 34223 | 40248003 ~ 40248270 (-) |
| G1548384 | NA | non-coding | upstream | 46364 | 40260144 ~ 40260373 (-) |
| LOC110496816 | LOC106588265 | other | downstream | 521603 | 39642841 ~ 39688750 (-) |
| LOC110496208 | LOC106588417 | other | downstream | 579186 | 39625771 ~ 39641803 (-) |
| G1546396 | LOC106588446 | other | downstream | 1422483 | 38776284 ~ 38787801 (-) |
| G1546385 | LOC106588448 | other | downstream | 1436600 | 38768097 ~ 38773684 (-) |
| LOC110496175 | LOC104924380 | other | downstream | 1534255 | 38674378 ~ 38676029 (-) |
| G1548367 | NA | other | upstream | 172190 | 40385970 ~ 40391883 (-) |
| G1548517 | NA | other | upstream | 426395 | 40640175 ~ 40685641 (-) |
| LOC118941164 | LOC106588367 | other | upstream | 691907 | 40902519 ~ 40908744 (-) |
| LOC110496277 | LOC106588347 | other | upstream | 1449656 | 41663436 ~ 41671516 (-) |
| G1550177 | LOC106569881 | other | upstream | 2101506 | 42315286 ~ 42316079 (-) |
