LOC100136269 (LOC106588393)


Basic Information

Item Value
gene id LOC100136269
gene name LOC106588393
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40417575 ~ 40429473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572015.2
ATGAAATCACGCGAGGTTTCTATTAATTTGACTAAATGCCACGTCTGAGAACGAATAGACACTTTTGAGATCTTCTGTTGGGAATCATTTATCTGATAAACCGTTATCACTGACCCGCAACATTGCAGACTGGTTATCCGTGCATAATTACAGCAGACAGGTGAGATGATGGCCCATGGACGTCTGCTAGCACTGTTCACAGGAGCGGTGCTGTTGCTAGCCGCCCAGCTAACTGTTGCTCACAGTCACTCTCATGACCATGGGCATGCACATTCGCATGGGGGTGGCGGTTGCCATGGTCATTCCCATGGCGGTCAGAAGCTGCACCAGGGGGCCAGCAAGTGGAGTGCTGAGGCCAACCTGCCCCCAGCAGAGGAGTCGCACCACGGTCACGCACATGACCACGGACATGACCACGGACATGCTCACGCACATGACCACGCCCATGGTCATGCTCACGGACACGACCACGCCCATGACCATGGTCATGCTCACGGACACGACCACGCCCATGACCATGGTCATGCTCATGAGCACAAGGAGGAGAGTGGACACGGGCACACCcaaggaggggagagggtgaagaggcaggtggaggaagagaagagggacaTAGTGGAGCTCTGGATGCAGGCCATCGGTGCCACTCTGCTGATCAGTGCTGCTCCCTTCCTCATCCTTTTCCTGATCCCGGTCCAGTCCAATACAGACCAGCACCAGAACCTCTTGAAGGTGCTGCTGAGCTTCGCCTCTGGTGGCCTGCTGGGAGACGCCTTTCTGCACCTCATCCCTCACGCCCTGGAGCCTCACTCTAACCATGGAGACGAGGGACAAGGCCACTCTGACAGTGAAGAATCACAGTATCATGGCCACTCACATGGTGCTGCCCATGGTCACATGATGTCAGTAGGGCTGTGGGTTCTCGGTGGAATCGTGGCCTTCCTGGTGGTGGAGAAATTTGTTCGCCTCCTGAAGGGTGGACACGGACACTCCCACTCTCAGGCTGCTCCTAAGGCAAAGGAGAGTGACGgggagaaaaagaagaagaatgagGGTGAGAAAGATTCAAAAGAAAACAAAGATGAGAAGACTCCAAAAGAAGTGGAGGAGAAAACTACAGATATCAAGGTGTCGGGCTACCTGAACCTGGCTGCTGACTTCACACACAATTTCACTGACGGGTTGGCCATCGGGGCATCGTTCCTGGTGGGCCCAGCAGTAGGCACAGTCACCACTCTCACCATCCTGCTGCACGAGGTGCCCCACGAGATTGGCGACTTTGCCATCCTGGTCCAGTCTGGCTGCACCAAGAAGAAGGCTATGTGTCTACAGCTGCTGACAGCCTTGGGGGCTCTTGCCGGCACAGCCTGCTCCCTATTGGCTGAGGGTGTGGGTGCGGCCGCCACAGCCTGGATCCTACCATTCACTGCGGGTGGCTTTGTGTACATTGCCACGGTGACGGTTCTGCCTGAGCTGCTGGTTGGCCGCTCCAGTCTGGGCCAATCAGTGATGGAGATCCTAGCGATGCTGGTTGGAATTTACATGATGGTGCTAATCGCAGAGTATGAGTGAGACAGCGAGTCATCAAAAAGTAAGGGCggtagaaggagggagggatttaGAGGAGGAGCAGAAACCGAATGTGAGAGATGGATTTATACGATTGGAGGGAAAGATACTGATGGAGTTTAAAGGAGAGGGTGAGAAGATAAGTGACAGACATGGCTTTCACAGGACTGGACTAGGTTCCAAAGGGGACTTGAATGGGGAGTAGCATTTTAACACAAACCATCTGCAGGATGATGAGCAATAAGATATGTACTCTACAAAGTCCTCATCGGCATGTCTAAATCAGATAGGTCATCAAACCGAGACTTAGGCAAGCTACGCAGATGACTTGGGAGTTGTAGTTCATCGTCCATTAATAATTGCAGAGTTTATTCCCTTTTGGTCATAAAAAGGCTAACCAAAACAGTGTCCGTTTAAGTTGCCGTGAACTATAGTTAAAATCAAGAATTGCAATCATACCAATATGTTTAATGCTTACGTTTGCCTTTAATTGTACTTGCAGAGATCACAGATTGAACACAATAGAACTAGACAGTAAAGTGGTTAGGGCATTTTCCTGGGTTTAAATTCAGGGTTTATTTGGATCAGAGTATGTTAGTCTACAACTGGAACATTCCAATGAAATGAAAAGGGCATAATATTATAACGTGTAGTCCATAAACCAGGTCCCCAAACAGCAGCCATCTTAGATACTTGACATATATGAGGCCAAGAGGCTCCTGAAATGTCATCAGCTTCCGGAATGTGACTTATTGGGAAACATGAATAAGCTGCTTTAGATGTCTACAGCACACGGCAGTTACTGACCAAGCCACTTGTTTGTAACTGTTTTCATAACTGTTGGATGCTTTCGAGTTGCATGAAAATCATGAGTTGTACCAGTATGTGACTATCTCTTAATTTCATTATTACTCAATGGGTAAGTGATGTAAGCTGTGCTTAGAGGATCTTTGGAGTATGATTAGCTTCATAGTGAATAAATTGCTTTAAATGTGCCCGTCACATGAATTACCTTCATAATGTGGAAGTACAGTAAATTCATGTATTTAGGGTGGACAGGCCATTTGGAAACTGAACCGATTATCCAGTGACAGGAATCTTCCACCCTAATTTATCTTAATGTGTCTGGAAGGAATGTTTGACCTACCTTTGAACAACTGAATGATGAATCCTCTTCTACTTTTGTTTAGTGTTAATAAGCCGCGGCAGCAGGTTTTGTTGAATTGTAACATTTATTCATTTTTATTCACGTGTActattctctttttttttttcttgaatGGGTGTCTGCTTTCCCTCCACTCTTGAATAATACAGTAGGCCTTATGTGTCATAAAGACAATCAATGCTGTAGCTGTAATGTGGTTAGAAAGAGCTCCTTCACCCTAAACCATTCTGTATGTACACGACTGCATCTTTGGGCTGATTCCAAACCAACCCCACGCTGCTATCCCCATTTACCTTGTTGACTTTTTTGTTATGTATCTGAGATGGTTTGTATTGTCAATATTGTATAGTAAGCTGCTTTACGTAGGCATTTGTAATAATTAGGTTGTTTCCATCCAATGTATTCCTTTACATTGCCAGTCTTATCAGATGCCTTAAGTTGTCAACATTGGCTTATAGTTGGGTGCAATGGCTTGATTTGGAATCAGAACTTTTAATCAGAGGGACCAAGTAAAAAGGATTAATGTTAAAGTGGTGGGTGGGAGATTTAGTAAGAGAGTATGGTGGAATTTGTGTTACTTTGTTTTCTTGGACTTTTCATTAAACAATTAAGATTCCCTTACAATGTTTACACTATATTTTACTGGGTCCCTGTTTCTCATTAGATAATGCAAGAGAACATGAAAAATACAAGCAATCCAATACTTGATTAGTTTATAATCCAACCTAGGCTAGATATTGGGGGGGAAATTAACAACCGATCACAAACACAAGATGCAGGCCAAGTGTGACCgtattattatatataatatacatacgCTAAATGTACAAAACAgtaggaacacattcctaatattgagttgcacacccgTTTGCACTCAGAACCACCTcaattctacaaggtgtcggaagCGGTCTACAGTGatcctggcccatgttgactccaatgattgCCAGAttcgtgtcaagttggctggatgtcctttgggtggtggaaaattcttgatacacatgggaaactgagTGTGAAAATCCCATCAGcggtgcagttcttgacactcaaaccggtgcacctagcatctatgtcatggaaagaggtgttcctaatgttttgtgcactgtgAATGTAACTGCTTTGCTTGAAATATCTTAGTAAAACTTCTAAACTTTTACGTTTACCACAAAAATTATGTTAAATTAAAGCAAGCCCGCATCTTTACTTGTAAAGTCATCCTCTAGTttgatcttgttcttgataccatgtcttatTTTGAGGTGCTTTGACTGTCACGCCTATGCTAATATTGTTcaaattcgctagctagctagccaacaactgtaacgatgtgtttgagacaagtgctcattgtgcaaatgtatgttttcaataaacattgtaGACGAAATATA

Function

NR:

description
zinc transporter Slc39a7

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14713 SLC39A7, KE4, ZIP7; solute carrier family 39 (zinc transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572015.2 True 4146 mRNA 0.45 8 40417575 40429473

Neighbor

gene id symbol gene type direction distance location
LOC101268904 LOC106588394 coding downstream 1491 40392620 ~ 40416084 (-)
LOC110496231 LOC106569953 coding downstream 48397 40319045 ~ 40369178 (-)
LOC110496227 LOC106569958 coding downstream 203795 40210284 ~ 40213780 (-)
LOC118941158 LOC106588400 coding downstream 208373 40208464 ~ 40209202 (-)
trnaa-ugc-138 NA coding downstream 230360 40187142 ~ 40187215 (-)
LOC110496236 NA coding upstream 15782 40445255 ~ 40455548 (-)
rps18 LOC107726165 coding upstream 39636 40469109 ~ 40471565 (-)
LOC100653472 LOC100653472 coding upstream 55888 40485361 ~ 40487640 (-)
LOC118941162 NA coding upstream 71265 40500738 ~ 40501410 (-)
LOC118941163 NA coding upstream 72192 40501665 ~ 40503478 (-)
G1548439 NA non-coding downstream 47197 40370046 ~ 40370378 (-)
G1548418 NA non-coding downstream 100354 40316985 ~ 40317221 (-)
G1548417 NA non-coding downstream 100992 40316319 ~ 40316583 (-)
G1548413 NA non-coding downstream 105562 40311798 ~ 40312013 (-)
G1548508 NA non-coding upstream 89100 40518573 ~ 40518783 (-)
G1548520 NA non-coding upstream 113518 40542991 ~ 40543403 (-)
G1548521 NA non-coding upstream 115194 40544667 ~ 40544898 (-)
G1548525 NA non-coding upstream 124940 40554413 ~ 40554685 (-)
G1548540 LOC106588374 non-coding upstream 150117 40579590 ~ 40580803 (-)
G1548367 NA other downstream 25692 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 728894 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 786477 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1629774 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1643891 38768097 ~ 38773684 (-)
G1548517 NA other upstream 210702 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 476214 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1233963 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1885813 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1929675 42359148 ~ 42359628 (-)

Expression


Co-expression Network