LOC110496236


Basic Information

Item Value
gene id LOC110496236
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40445255 ~ 40455548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037475.1
tctgaaacacaaccaaaactaaCTGCAAATGAATCTAATAAATTTGTAGAGTTACAagattgatgtagtcattgcatgctgggaatatgggaccaaatactaaacttttgacaacattaatacacaagtgaatttgACCAAATACTTTCGGTTCCCTAAAAGTGGACTATGtgcaaaaagtgctgtaatttctaaacggttcaaccgatatggatgaaaataccctcaaattaaagctcaGTGTGCACTTTAACCTCGTAGTCATTGTATTATTTCAGAAGTGCTGGAGCACACAGCCTAAACAACCAAAAATGTATCAATGTCCAAAAAACGTTTGGACTTCGCTGTAGGGGTGTTTTGTTGGTgagaatacagtggggcaaaaaagtatttagttggccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaaatccagaaaatcacattgtaggatttttaatgaatttattagcaaattatcaTACCCTGACTCCAACATAACCCAGACTCAGccagctgtcaatcactctgCTGCCTTCCTCTTTCTCACTGCAGATGACTCCCACCAAGGGAACTACAGCTGTGTTTATGAGATTTATGTTTTTTCTCATAATTTCTCCTCCGAGAGTGATCTCATCTCCCTCACTGTCACAGCCTCTCCTCGGACGGCTTTCATCATCAGACTGGTTGTAGTACTTCAGATGTCACTGACAGCCAACACTGCCATCTATCTGTACATCAAGACCACCAGGAGGCGAGGGGAAGGGGTGAATTTGGAGATGGTTTCTCTGAGGACCAGAGCTGAAACCGGACCTGGAGAGAGCAGCCCAGGTGACAGACTAGGGTGAAGTTGACTGAAAAGTCTAAGTGTGGTCCATGGGACATCCAACTCTGACctcaccccattgaagttgaaatgtaaaatgtttGAAATGCAGTTGAAGTCATTTCAAAtgtataaaggttagggttaaggttaggataatgGTTAGGGTAGGGTAAGCGTCCCAAGATTCCCCGATAGCACGAACTAAAGTTGACCGTAGAGACGCTGAACTTAGGTCCGTTTTTTGTTTTCCAGATACCATGGGACTGGTGTAGACCTGATGGGATTTTAATCCAAACCCAATTAAATGAAATGAGTGTTAAGTTTCTATTGGTTGTGCTATGGCTGCACTTCCTTgctctttattttattattatcatcatgttTTAACGGCGTTATGTGATTCTTCTCATGTTATTTCATAAACAAATGCTCACTACAGTACTATTATTGTTTGCCTAGAGAGTGCTATTGGTGCAATGTAGAATAACACATTTCATAAATAAAGGTTTTGTGT
>XR_005037476.1
gggaactaactaactaaaagggttcttcaaagggttatcctatggggacagcagaaggACACTTTTAGGTTATAGGTAGCACCTTTCTTTCTAAGTGTGTACTGCTGATAAAATAACTCTGGCTCAAAATGTGTCCTCACCAAACATTGTATTTCCCTCCCTGGTGTTTACAGTTGAAGGTCAATTCAGAGTGATGAATGGGACCAGCTCCTGTGCTGGAGGAGCACAGGGGTTTTTATTTGGACACTGGAGGTCTGTATGTGGCAATTATTGGGCCATGTAAGATGCTAACATTGTGTGTAGAAAGAtgggctgtgggaatgttgtagCTGCACTTGGCATACCTCATTTTGGAGAGGGAATGGAAGGATACCAAATAGGATTTATTGCTTGCTCACCACTGGATTCTACTCTTGAGAAGTGTGACTTCGCCTTTACTGCAGGCGATGGTTGTCGTAATTATGCTAATGTATCCGTTCAGGTAAGATTGATAGGGATTGTGTCGAACTATATTACAATCTTTTATCCAATACATAGCTGGTAGcatcaacaaaactgattggaTATTGAACCATCTTTTGTTCAGAGTCTGTGAGGTTTGTGGATGGAGCTGGTTTGtgctctgggagagtggaggtgaagtcCAATCAGTCCTGGGTCTCAGTGTGTGAAGCTGACTTTGACTGGCATAATGCAGAGGTAGTCTGTCGGGAGCTTGACTGTGGGGCTCCTTCAATTCTGCAGGGGGGGGCTCTATAGAGTTTACAATtgactcattcatccccctcctctcccctgtaactattccccaggtcgttgctgcaaatgagaacgtgttctcagtcaacttacctggtaaaataacggataaatagaGAAGCTAAGGGTAAAGGCAATCAGTCTCTTTTTCTGGACTGTGACACCTCAGTGAGAAAAAGTCAAACCTGCTTACCTGGTAATGctgttggactcacctgctcagATGACTCCCACCAAGGGAACTACAGCTGTGTTTATGAGATTTATGTTTTTTCTCATAATTTCTCCTCCGAGAGTGATCTCATCTCCCTCACTGTCACAGCCTCTCCTCGGACGGCTTTCATCATCAGACTGGTTGTAGTACTTCAGATGTCACTGACAGCCAACACTGCCATCTATCTGTACATCAAGACCACCAGGAGGCGAGGGGAAGGGGTGAATTTGGAGATGGTTTCTCTGAGGACCAGAGCTGAAACCGGACCTGGAGAGAGCAGCCCAGGTGACAGACTAGGGTGAAGTTGACTGAAAAGTCTAAGTGTGGTCCATGGGACATCCAACTCTGACctcaccccattgaagttgaaatgtaaaatgtttGAAATGCAGTTGAAGTCATTTCAAAtgtataaaggttagggttaaggttaggataatgGTTAGGGTAGGGTAAGCGTCCCAAGATTCCCCGATAGCACGAACTAAAGTTGACCGTAGAGACGCTGAACTTAGGTCCGTTTTTTGTTTTCCAGATACCATGGGACTGGTGTAGACCTGATGGGATTTTAATCCAAACCCAATTAAATGAAATGAGTGTTAAGTTTCTATTGGTTGTGCTATGGCTGCACTTCCTTgctctttattttattattatcatcatgttTTAACGGCGTTATGTGATTCTTCTCATGTTATTTCATAAACAAATGCTCACTACAGTACTATTATTGTTTGCCTAGAGAGTGCTATTGGTGCAATGTAGAATAACACATTTCATAAATAAAGGTTTTGTGT

Function

NR:

description
Pit54, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037475.1 False 1412 mRNA 0.40 3 40445255 40446910
XR_005037476.1 True 1770 mRNA 0.43 4 40445255 40455548

Neighbor

gene id symbol gene type direction distance location
LOC100136269 LOC106588393 coding downstream 15782 40417575 ~ 40429473 (-)
LOC101268904 LOC106588394 coding downstream 29171 40392620 ~ 40416084 (-)
LOC110496231 LOC106569953 coding downstream 76077 40319045 ~ 40369178 (-)
LOC110496227 LOC106569958 coding downstream 231475 40210284 ~ 40213780 (-)
LOC118941158 LOC106588400 coding downstream 236053 40208464 ~ 40209202 (-)
rps18 LOC107726165 coding upstream 13561 40469109 ~ 40471565 (-)
LOC100653472 LOC100653472 coding upstream 29813 40485361 ~ 40487640 (-)
LOC118941162 NA coding upstream 45190 40500738 ~ 40501410 (-)
LOC118941163 NA coding upstream 46117 40501665 ~ 40503478 (-)
LOC110496249 NA coding upstream 89661 40545209 ~ 40553619 (-)
G1548439 NA non-coding downstream 74877 40370046 ~ 40370378 (-)
G1548418 NA non-coding downstream 128034 40316985 ~ 40317221 (-)
G1548417 NA non-coding downstream 128672 40316319 ~ 40316583 (-)
G1548413 NA non-coding downstream 133242 40311798 ~ 40312013 (-)
G1548508 NA non-coding upstream 63025 40518573 ~ 40518783 (-)
G1548520 NA non-coding upstream 87443 40542991 ~ 40543403 (-)
G1548521 NA non-coding upstream 89119 40544667 ~ 40544898 (-)
G1548525 NA non-coding upstream 98865 40554413 ~ 40554685 (-)
G1548540 LOC106588374 non-coding upstream 124042 40579590 ~ 40580803 (-)
G1548367 NA other downstream 53372 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 756574 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 814157 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1657454 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1671571 38768097 ~ 38773684 (-)
G1548517 NA other upstream 184627 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 450139 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1207888 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1859738 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1903600 42359148 ~ 42359628 (-)

Expression


Co-expression Network