LOC110496235 (LOC106588392)


Basic Information

Item Value
gene id LOC110496235
gene name LOC106588392
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40460473 ~ 40464209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572018.2
AAATCAAGTTGCTTCCACACATCCGGCGAAAAAAAAAGAGAACGATGGCTACAGAGGGTTTCCAAACCTGTCGTCTTTGAGTAATTATTGTCATTCTGGATGAAAAATAGCGATAGTATCACCCCCTCCCCCAACATACATCGTGATGGAAAAGAATCCCGTCACACGGTGGTCATAGTGGCACGAGCTTAAAACTGTTTCGTTACAATCCGGTGTTcgtagcaagctagctagttgtGCTGCGTGGGCTTGCGTCACCGGGCAGCTGTCCGTCAAATTCCTTGGGAGGGGTCTATAAAACACAAAATGGCGACTCCAGTCAACATCCAAAACCCCAGTAAGACGTGGGAGCTGAGCTTGTATGAACTGCACAGGAGCCCACAGGAGGCGATCATGGACGGCACAGAGATAGCTGTGTCCCCCCGGAGCCTCCACAGTGAGCTGATGTGCCCCATCTGTCTGGACATGTTGAAGAACACAATGACCACCAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCATCGTCACTGCACTCCGATCAGGgaACAAGGAATGCCCCACGTGCCGAAAGAAGCTTGTGTCGAGACGCTCGCTCCGCCGCGACTCCAACTTTGACGCCCTCATCTCCAAGATCTACCCCAGCCGTGACGAGTACGAGGCCCACCAGGACCGGGTGCTGGAGAGACTCAACCGGCTGCACAACAAGCAGGCTCTCAGCTCCAGCATTGAGGAGGGGCTGCGCATGCAGGCTCTGCACAGACGCCCCAGAGCCCAGCGAGTGCGCAAACCGGCGCAGGAGAGCGACAACACCACCTTCAGCGGCGGCGAGGACAACGGGGATGCACGGTCACACCTCTCCCACGACTCTGCGCCCTCCCACGCGCCCCTCCCCCCGAGCCACACACCCTCTGAGGCCGGGCCCAGCCGGAACCCTAAGCGGCCTAGGGTGTCAGATGAGTCAGGCCCAGAGGTGGATGGGGGCAGCCCCACGGCCCCGCTCCGGCACCACAAAGAGGGCCCTGGCTCAGAGATAGAGCTGGTTTTCCGTCCGCACCCCCTGCTGGTCAACACACAGGACTACAGCCAGACCAGATATGTGAAGACCACAGCCAACGCCACAGTGGACCATCTGTCTAAGTACCTGGCTCTGCGTATCGCTCTGGAGGAGAGGCAAAGAGACAGCCAATCCGATGCAGCGatggagaaggggaaagagggagtggaggcGGGGGCTAAAGGAGAGAAATCAGCAGGAGGGGCCAGCCTGAAGAACGTCAGTGAGAAGCAATacaccatctacatcaccacatcAGGGGGCCAGTTCTCTACTCTGAACGGCTCCCTGACTTTAGAGCTGGTGAATGAGAAGTACTGGAAGGTCAGAAAGCCTCTGGAGCTTTACTATGCCCCCACCAAGGACCAACCTCTTCAACCATCACAGCCACCGCAGCAGAAGTCCCCACAGCCcaaagaggggtgaggaggacagGAGTCCTCCCTCTTCAGCTGTTATCACTCGCTGTCTCTGACAGATTTCTGTGTGTGGCGTGTAGCTGCTTCTAAGGTAGTCATTTGGAACATTCCATAGATTGAAGGTCTTCAACTTTGACCTCAGAATCTGAAGGTTTTCTGTTTTTATCCTCCGTAGCTTCTAATCAAACCTGAGTATGAAGTTGTTTTTGCAATTCCTACACATTTTTTTCCTTAATCGAATGGTTGACTTAAAATGCTGTCTGGACCGGTGTGCACACCTACGTAGTCCAGCCTTCCTTCAGACCACCAAGTGTTGCTTGACCTTGCATCAGGACTGCCAGATTTTGTTGATACATCATTTCAGATCAGTGTGAGAAttcatacactaccggtcaaaagtttttcaaacacctactcattcaagggtttttatttattttgactcttttctacattgtagaataatagtgaagagatcaaaactatgaaatgacatgtggaatcatgtagtaaccacaaaagtgataaacaaatcaaaatacagtacattttaTAGTTGAGATTCCTCCCctttttcaaacagtcttgaaggagttcctacatatgctgagcacttgttggctgcttttccttcactctgcggtccgactcatcccaaaccatctcaatttagttgaggtcgggtgattgtggaggcc
>XM_036952805.1
AAATCAAGTTGCTTCCACACATCCGGCGAAAAAAAAAGAGAACGATGGCTACAGAGGGTTTCCAAACCTGTCGTCTTTGAGTAATTATTGTCATTCTGGATGAAAAATAGCGATAGTATCACCCCCTCCCCCAACATACATCGTGATGGAAAAGAATCCCGTCACACGGTGGTCATAGTGGCACGAGCTTAAAACTGTTTCGTTACAATCCGGTGTTcgtagcaagctagctagttgtGCTGCGTGGGCTTGCGTCACCGGGCAGCTGTCCGTCAAATTCCTTGGGAGGGGTCTATAAAACACAAAATGGCGACTCCAGTCAACATCCAAAACCCCAGTAAGACGTGGGAGCTGAGCTTGTATGAACTGCACAGGAGCCCACAGGAGGCGATCATGGACGGCACAGAGATAGCTGTGTCCCCCCGGAGCCTCCACAGTGAGCTGATGTGCCCCATCTGTCTGGACATGTTGAAGAACACAATGACCACCAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCATCGTCACTGCACTCCGATCAGGgaACAAGGAATGCCCCACGTGCCGAAAGAAGCTTGTGTCGAGACGCTCGCTCCGCCGCGACTCCAACTTTGACGCCCTCATCTCCAAGATCTACCCCAGCCGTGACGAGTACGAGGCCCACCAGGACCGGGTGCTGGAGAGACTCAACCGGCTGCACAACAAGCAGGCTCTCAGCTCCAGCATTGAGGAGGGGCTGCGCATGCAGGCTCTGCACAGAGCCCAGCGAGTGCGCAAACCGGCGCAGGAGAGCGACAACACCACCTTCAGCGGCGGCGAGGACAACGGGGATGCACGGTCACACCTCTCCCACGACTCTGCGCCCTCCCACGCGCCCCTCCCCCCGAGCCACACACCCTCTGAGGCCGGGCCCAGCCGGAACCCTAAGCGGCCTAGGGTGTCAGATGAGTCAGGCCCAGAGGTGGATGGGGGCAGCCCCACGGCCCCGCTCCGGCACCACAAAGAGGGCCCTGGCTCAGAGATAGAGCTGGTTTTCCGTCCGCACCCCCTGCTGGTCAACACACAGGACTACAGCCAGACCAGATATGTGAAGACCACAGCCAACGCCACAGTGGACCATCTGTCTAAGTACCTGGCTCTGCGTATCGCTCTGGAGGAGAGGCAAAGAGACAGCCAATCCGATGCAGCGatggagaaggggaaagagggagtggaggcGGGGGCTAAAGGAGAGAAATCAGCAGGAGGGGCCAGCCTGAAGAACGTCAGTGAGAAGCAATacaccatctacatcaccacatcAGGGGGCCAGTTCTCTACTCTGAACGGCTCCCTGACTTTAGAGCTGGTGAATGAGAAGTACTGGAAGGTCAGAAAGCCTCTGGAGCTTTACTATGCCCCCACCAAGGACCAACCTCTTCAACCATCACAGCCACCGCAGCAGAAGTCCCCACAGCCcaaagaggggtgaggaggacagGAGTCCTCCCTCTTCAGCTGTTATCACTCGCTGTCTCTGACAGATTTCTGTGTGTGGCGTGTAGCTGCTTCTAAGGTAGTCATTTGGAACATTCCATAGATTGAAGGTCTTCAACTTTGACCTCAGAATCTGAAGGTTTTCTGTTTTTATCCTCCGTAGCTTCTAATCAAACCTGAGTATGAAGTTGTTTTTGCAATTCCTACACATTTTTTTCCTTAATCGAATGGTTGACTTAAAATGCTGTCTGGACCGGTGTGCACACCTACGTAGTCCAGCCTTCCTTCAGACCACCAAGTGTTGCTTGACCTTGCATCAGGACTGCCAGATTTTGTTGATACATCATTTCAGATCAGTGTGAGAAttcatacactaccggtcaaaagtttttcaaacacctactcattcaagggtttttatttattttgactcttttctacattgtagaataatagtgaagagatcaaaactatgaaatgacatgtggaatcatgtagtaaccacaaaagtgataaacaaatcaaaatacagtacattttaTAGTTGAGATTCCTCCCctttttcaaacagtcttgaaggagttcctacatatgctgagcacttgttggctgcttttccttcactctgcggtccgactcatcccaaaccatctcaatttagttgaggtcgggtgattgtggaggcc
>XM_021572016.2
CACTAGCTATGCTAGCTAGACCCCATAACTAGCTAGACTGCAAGTCACTTTTTTGTTTCTACCGAAGCAAGCTAGCTACACATGGATAGATAGCATGATGATCGTGTGACATTACGATTCTACCGAAGTCTGACAGTTTGCTCGATGGAGGGGTCTATAAAACACAAAATGGCGACTCCAGTCAACATCCAAAACCCCAGTAAGACGTGGGAGCTGAGCTTGTATGAACTGCACAGGAGCCCACAGGAGGCGATCATGGACGGCACAGAGATAGCTGTGTCCCCCCGGAGCCTCCACAGTGAGCTGATGTGCCCCATCTGTCTGGACATGTTGAAGAACACAATGACCACCAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCATCGTCACTGCACTCCGATCAGGgaACAAGGAATGCCCCACGTGCCGAAAGAAGCTTGTGTCGAGACGCTCGCTCCGCCGCGACTCCAACTTTGACGCCCTCATCTCCAAGATCTACCCCAGCCGTGACGAGTACGAGGCCCACCAGGACCGGGTGCTGGAGAGACTCAACCGGCTGCACAACAAGCAGGCTCTCAGCTCCAGCATTGAGGAGGGGCTGCGCATGCAGGCTCTGCACAGACGCCCCAGAGCCCAGCGAGTGCGCAAACCGGCGCAGGAGAGCGACAACACCACCTTCAGCGGCGGCGAGGACAACGGGGATGCACGGTCACACCTCTCCCACGACTCTGCGCCCTCCCACGCGCCCCTCCCCCCGAGCCACACACCCTCTGAGGCCGGGCCCAGCCGGAACCCTAAGCGGCCTAGGGTGTCAGATGAGTCAGGCCCAGAGGTGGATGGGGGCAGCCCCACGGCCCCGCTCCGGCACCACAAAGAGGGCCCTGGCTCAGAGATAGAGCTGGTTTTCCGTCCGCACCCCCTGCTGGTCAACACACAGGACTACAGCCAGACCAGATATGTGAAGACCACAGCCAACGCCACAGTGGACCATCTGTCTAAGTACCTGGCTCTGCGTATCGCTCTGGAGGAGAGGCAAAGAGACAGCCAATCCGATGCAGCGatggagaaggggaaagagggagtggaggcGGGGGCTAAAGGAGAGAAATCAGCAGGAGGGGCCAGCCTGAAGAACGTCAGTGAGAAGCAATacaccatctacatcaccacatcAGGGGGCCAGTTCTCTACTCTGAACGGCTCCCTGACTTTAGAGCTGGTGAATGAGAAGTACTGGAAGGTCAGAAAGCCTCTGGAGCTTTACTATGCCCCCACCAAGGACCAACCTCTTCAACCATCACAGCCACCGCAGCAGAAGTCCCCACAGCCcaaagaggggtgaggaggacagGAGTCCTCCCTCTTCAGCTGTTATCACTCGCTGTCTCTGACAGATTTCTGTGTGTGGCGTGTAGCTGCTTCTAAGGTAGTCATTTGGAACATTCCATAGATTGAAGGTCTTCAACTTTGACCTCAGAATCTGAAGGTTTTCTGTTTTTATCCTCCGTAGCTTCTAATCAAACCTGAGTATGAAGTTGTTTTTGCAATTCCTACACATTTTTTTCCTTAATCGAATGGTTGACTTAAAATGCTGTCTGGACCGGTGTGCACACCTACGTAGTCCAGCCTTCCTTCAGACCACCAAGTGTTGCTTGACCTTGCATCAGGACTGCCAGATTTTGTTGATACATCATTTCAGATCAGTGTGAGAAttcatacactaccggtcaaaagtttttcaaacacctactcattcaagggtttttatttattttgactcttttctacattgtagaataatagtgaagagatcaaaactatgaaatgacatgtggaatcatgtagtaaccacaaaagtgataaacaaatcaaaatacagtacattttaTAGTTGAGATTCCTCCCctttttcaaacagtcttgaaggagttcctacatatgctgagcacttgttggctgcttttccttcactctgcggtccgactcatcccaaaccatctcaatttagttgaggtcgggtgattgtggaggcc
>XM_021572017.2
CACTAGCTATGCTAGCTAGACCCCATAACTAGCTAGACTGCAAGTCACTTTTTTGTTTCTACCGAAGCAAGCTAGCTACACATGGATAGATAGCATGATGATCGTGTGACATTACGATTCTACCGAAGTCTGACAGTTTGCTCGATGGAGGGGTCTATAAAACACAAAATGGCGACTCCAGTCAACATCCAAAACCCCAGTAAGACGTGGGAGCTGAGCTTGTATGAACTGCACAGGAGCCCACAGGAGGCGATCATGGACGGCACAGAGATAGCTGTGTCCCCCCGGAGCCTCCACAGTGAGCTGATGTGCCCCATCTGTCTGGACATGTTGAAGAACACAATGACCACCAAGGAGTGCCTGCACCGCTTCTGCTCCGACTGCATCGTCACTGCACTCCGATCAGGgaACAAGGAATGCCCCACGTGCCGAAAGAAGCTTGTGTCGAGACGCTCGCTCCGCCGCGACTCCAACTTTGACGCCCTCATCTCCAAGATCTACCCCAGCCGTGACGAGTACGAGGCCCACCAGGACCGGGTGCTGGAGAGACTCAACCGGCTGCACAACAAGCAGGCTCTCAGCTCCAGCATTGAGGAGGGGCTGCGCATGCAGGCTCTGCACAGAGCCCAGCGAGTGCGCAAACCGGCGCAGGAGAGCGACAACACCACCTTCAGCGGCGGCGAGGACAACGGGGATGCACGGTCACACCTCTCCCACGACTCTGCGCCCTCCCACGCGCCCCTCCCCCCGAGCCACACACCCTCTGAGGCCGGGCCCAGCCGGAACCCTAAGCGGCCTAGGGTGTCAGATGAGTCAGGCCCAGAGGTGGATGGGGGCAGCCCCACGGCCCCGCTCCGGCACCACAAAGAGGGCCCTGGCTCAGAGATAGAGCTGGTTTTCCGTCCGCACCCCCTGCTGGTCAACACACAGGACTACAGCCAGACCAGATATGTGAAGACCACAGCCAACGCCACAGTGGACCATCTGTCTAAGTACCTGGCTCTGCGTATCGCTCTGGAGGAGAGGCAAAGAGACAGCCAATCCGATGCAGCGatggagaaggggaaagagggagtggaggcGGGGGCTAAAGGAGAGAAATCAGCAGGAGGGGCCAGCCTGAAGAACGTCAGTGAGAAGCAATacaccatctacatcaccacatcAGGGGGCCAGTTCTCTACTCTGAACGGCTCCCTGACTTTAGAGCTGGTGAATGAGAAGTACTGGAAGGTCAGAAAGCCTCTGGAGCTTTACTATGCCCCCACCAAGGACCAACCTCTTCAACCATCACAGCCACCGCAGCAGAAGTCCCCACAGCCcaaagaggggtgaggaggacagGAGTCCTCCCTCTTCAGCTGTTATCACTCGCTGTCTCTGACAGATTTCTGTGTGTGGCGTGTAGCTGCTTCTAAGGTAGTCATTTGGAACATTCCATAGATTGAAGGTCTTCAACTTTGACCTCAGAATCTGAAGGTTTTCTGTTTTTATCCTCCGTAGCTTCTAATCAAACCTGAGTATGAAGTTGTTTTTGCAATTCCTACACATTTTTTTCCTTAATCGAATGGTTGACTTAAAATGCTGTCTGGACCGGTGTGCACACCTACGTAGTCCAGCCTTCCTTCAGACCACCAAGTGTTGCTTGACCTTGCATCAGGACTGCCAGATTTTGTTGATACATCATTTCAGATCAGTGTGAGAAttcatacactaccggtcaaaagtttttcaaacacctactcattcaagggtttttatttattttgactcttttctacattgtagaataatagtgaagagatcaaaactatgaaatgacatgtggaatcatgtagtaaccacaaaagtgataaacaaatcaaaatacagtacattttaTAGTTGAGATTCCTCCCctttttcaaacagtcttgaaggagttcctacatatgctgagcacttgttggctgcttttccttcactctgcggtccgactcatcccaaaccatctcaatttagttgaggtcgggtgattgtggaggcc

Function

NR:

description
E3 ubiquitin-protein ligase RING2-A-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10695 RNF1_2; E3 ubiquitin-protein ligase RNF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572018.2 False 2173 mRNA 0.52 7 40460473 40464209
XM_036952805.1 False 2164 mRNA 0.52 7 40460473 40464209
XM_021572016.2 False 2035 mRNA 0.52 7 40460766 40464209
XM_021572017.2 True 2026 mRNA 0.52 7 40460766 40464209

Neighbor

gene id symbol gene type direction distance location
LOC118941159 NA coding upstream 141639 40316169 ~ 40318834 (+)
LOC110496233 brd2 coding upstream 150907 40297053 ~ 40309566 (+)
psb8 psb8 coding upstream 203189 40249188 ~ 40257284 (+)
LOC118941049 NA coding upstream 222047 40236397 ~ 40238426 (+)
LOC110496230 abcb3 coding upstream 225937 40228255 ~ 40234536 (+)
vps52 vps52 coding downstream 7939 40408575 ~ 40517763 (+)
LOC110496243 LOC106588384 coding downstream 23745 40487954 ~ 40500744 (+)
LOC110496240 LOC106588375 coding downstream 61676 40525885 ~ 40542149 (+)
LOC110496237 LOC105028059 coding downstream 98761 40562970 ~ 40601009 (+)
LOC110496242 LOC106588382 coding downstream 143081 40607290 ~ 40611845 (+)
G1547815 NA non-coding upstream 40077 40417407 ~ 40420396 (+)
G1547840 NA non-coding upstream 44624 40414796 ~ 40415849 (+)
G1547697 LOC106588396 non-coding upstream 137606 40322289 ~ 40322867 (+)
G1547773 NA non-coding upstream 173131 40287052 ~ 40287342 (+)
G1547834 rps18 non-coding downstream 4900 40469109 ~ 40471582 (+)
G1547880 NA non-coding downstream 56078 40520287 ~ 40520591 (+)
G1547888 NA non-coding downstream 80266 40544475 ~ 40544828 (+)
G1547910 NA non-coding downstream 98110 40562319 ~ 40562524 (+)
G1547911 NA non-coding downstream 99321 40563530 ~ 40563743 (+)
G1547817 NA other upstream 30953 40427108 ~ 40429520 (+)
G1547788 NA other upstream 133292 40326475 ~ 40327181 (+)
G1547743 NA other upstream 258015 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 353627 40103731 ~ 40110006 (+)
G1547652 LOC106588410 other upstream 419879 40035517 ~ 40040594 (+)
G1547904 NA other downstream 243809 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 273409 40736719 ~ 40738475 (+)
G1548171 ndufb9 other downstream 701345 41165554 ~ 41169102 (+)
G1549270 NA other downstream 1173113 41637322 ~ 41638401 (+)

Expression


Co-expression Network