vps52 (vps52)


Basic Information

Item Value
gene id vps52
gene name vps52
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40408575 ~ 40517763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952807.1
TCCCGAGGACATTGGGGAAGAGCACACTACCTTTGTAGTTTTTTTTTAGGTTTGGAAGCTATGGCGGATAGAGCAGTGACTGCTGCTATGTCCGATGTAAACACAACTGTCCACTCAACGGCGAATTCCATGGCATATTTACAAGATGAGATGAAGCCTGACACAGATGCCATGGCCCCGCTCAACCTGGGTGACTTGGACTTGACCACAGATGAGTTCATCTTGGATGAGGTGGACATTCACATACAGGCTAATCTTGAAGATGACTTGGTGAAGGAGGCGTTGAAAACGGGAGTTGACCTCCGGCAATACTCTAAACAAGTGGAGGATGAACTCCAACGGATTGAACAAGCTTCCATCAAAGACTATATCAAGGAGAGCCAGAATATTGCCTCTCTGCACAACCAGATCACAGCCTGTGACTCCATACTGGAGcgaaTGGAGGGCATGCTGAGCGGCTTCCAGAGTGACCTCTCATCCATCAGCAGTGAGATCCAGACTCTGCAGCAACAGTCGGTCAGCATGAACATGCGGCTGAAGAACAGGCAGGCTGTACGCAGCCACCTCAGCCAACTGGTGGATGAGCTGGTGGTGCCCGGAGCTATGATCCAGGTAATCTTGGAGAGCCCGGTGACAGAGCAGGAGTTCCTTGAGCAGCTCCATGAGCTCAACAACAAGATCAACTTTGCCAAAGAGCTCAGCTTCAGGGAGACTTTGGCCTGCTCTGACATCCAGGACATTGTGGACCGCCTCAAAATCAAGGCTGTCACAAAGATCAGAGAATTTATCCTGCAGAAGATTTATTCCTTCAGAAAGCCCATGACCAACTATCAAATCCCCCAGAACACCCTCCTCAAGTACAGGTTTTTCTATCAGTTCCTCTTGGCAAACGAAAGGACAGTGGCCAAGGAGATCAGGGATGAATATGTGGACACCATGAGTAAGATCTACTACAGTTACTTCAAGTCGTACAGCGGCAGGCTCCTCAAAGTACAGTATGAAGAGGTGGCAGACAAAGATGACTTGATGGGAGTGGAAGACACGGCCAAGAAAGGTTTCTTCTCCAAGCCCTCCCTGAAGAGCAGGAACACCATCTTCACCCTGGGCCAGCGGGGGGCCGTGCTGAGCCCTGCCGAGCTGGAGGGGCCCATCCTCATCCCCCACACTGCCCAGAGAGGGGACTGCAGGTATCCCTATGAGACGCTGTTCCGCAGTCAGCACTACGCCCTCTTGGACAACGGCTGTCGagagttcctcttcctgtctgactTCTTCATGGTGGCTGGAAATTCTGCGCTGGACCTCTTCAACAGCGTCATGGGAAAGACGCTCAGCTTGTTCCTGAAGAGCATGTCCACCTATGTGTCGGACTGCTACGACAGCATCGCCGTGTTCCTGTGTATCCACATCATCCTGCGTTTCAGAGCCATCACAAACAAGAGGACCATCCCAGCCCTGGACAAGTACTGGGATGCGGTGCTGGAACTGCTGTGGCCCAGGTTTGAGCTTATCCTGGAGATGAACATTCAGAGCATCCGCAACACGGATCCTCAAAAACTGGGCGTGCTGGACACCAGACCACATTAtATCACACGCAGATATGCAGAGTTCTCTTCTGCCATAGTTAGCATTAACCAGACATTCACCAGCGAGCGAACCCACACCCTCCTTGGCCAACTTCAGGTTGAAGTGGAGAACTTTGTCCTGAAGATGGCTGCAGAGTTCCCTTCACGCAGGGACCAGCTCATCTTCCTCATCAACAACTACGACATGATGCTCAGTGTACTCATGGAGAGGGCAGCTGATGACAGTAAAGAGGTTGAGGGTTTCCAACAGCTCCTCCAGGCCAGGAGCCAGGAGTTTATTGAGGAGATTCTGTCCTCTCCCTTTGGTGGCATGATAGCATTTGTGAAGGAGAGCGAGGCGCTGACGGAGAAAGGGCAGCTGGATAGACTAAAGAATGACGAAGCCCGGATCACCCAGCTGGTCAGGGGTTTCTCCAGCACATGGAAACAGTCTGTGGAGGCTCTGAGTCAGGACGTCATGAGGTCCTTCACCAACTTCAAGAACGGCACTGGCATCATTCAGGGAGCGCTCACTCAGCTGATCCAGTACTACCATGGCTTCCACAAGGTACTGGCCCAGCCCACCTTTCGCAGCCTGGCCGTGCGCTCTGAGCTCATCAACCTGCACCACCTCATGGTCGAAgtcaagaaacacaagcccaACTTCTAACTGGACACTCCAAGACTAGACTTAGGAATGATGTGATGGATTAAATGAAGGAGCTCAAAATCTGACATGGCCTGATTGGAAACAAGTGAAAGAGTATATCCCTTTGCTCGTGACATCACTCCACTGATTTAAAGACTGTATTGCGCGTGGGAACCTGTCGTTTATGATTTTACCAATGTCAATGGGTAAGGTGTTGTGTAAGTGCTACCTTTTCTTTCATGGGTGCTGGGTTCTTTGTTTTTTTCGGGAGGGGATAAAGAGACAGAAATAGGATGAGGGAATGTTCAGTGGTTATGGGGATTGACAGGAGAAGGCTGTCAGAAGAAACGGGGTAGATGGTCTATTCCATTCAGGGGTGCACAACTCGAGTTGTGCTTGTTTTGGCTTTCGTCTTATCACATAATTGAACAATTACTGGTTTATGCGTGAACTCACCTGGTTTCCCAAGTATAATCCAGGCTTGTTAAAAGGCAAGGGCCAAAACCTATGGCTCTCAGAGCTGTGCACCCCTAGTTTATTCTGAGTTTGAGAGGGAAGAGCAGGAAAGGGGAGGGATTGGCATCTCCTGGGCCCCTGTTGTGTTCTgatgtgtatactgtaactgtagaTGATAACATATTGGAATGTATTCATTTAAGTGTAATATACTCACAAGGCTGTAAAGGACCATCACATGGCTGTCATTTTCAATGCTTTATTTAACATTACATTGCTGTTATAAAATTGAACACAAA
>TU1771132
ttttttttttttttTGTCATTTTCAATGCTTTATTTAACATTACATTGCTGTTATAAAATTGAACACAAACAACTCACACTTTCATTTGATTGTATTATATACTTTGTTTTGTGTATATAATGCTCATACAAATGTTGGTTTCATGGCTGTgcccttgcccagtcatgtgaaatccctagattagggcctaatgaattgatttcctaatatgaactgtaactcggtaaaatcgttaattgttgcatttatatttttgttccgtgtatATTACTATCATAGGAGTAATTTAATATTTACAAACACTGAACATCATGCTCTCAGGTTATTTGTACAAATCAAGCTAGAATCCTTAAATGAAACAATAAAGCAGCCACCCACCTGTGTTTTGGTAAAAAGATAagggatgaacctggagaaatgtaaccactcaaatccATAGACAGCTATGGAgccaaggactgaccatccatgaaatCAAAATTACAGGTTTAACATTTGCATTCTTTACTactaacattggagtaaaacaagcatgCAGTTGGGGTTCTGATATATACATAggcgttatattcttcaagaatgaaTGGGTGTATCATTCATTCAGCaactaaggattccagctttaatgaTGTGGAGTGAAGAAACAACGTTTTAGGAGGATTTAAAGAGAATGAGTTCATTGCAACTTTTATTTGTTACTGGAAACTGGCTCAACCATCTTTGATTTGAGGTAAAAGCGTGTCTCTTAT
>TU1771133
ttttttttttttttTGTCATTTTCAATGCTTTATTTAACATTACATTGCTGTTATAAAATTGAACACAAACAACTCACACTTTCATTTGATTGTATTATATACTTTGTTTTGTGTATATAATGCTCATACAAATGTTGGTTTCATGGCTGTgcccttgcccagtcatgtgaaatccctagattagggcctaatgaattgatttcctaatatgaactgtaactcggtaaaatcgttaattgttgcatttatatttttgttccgtgtatATTGTGTCTCTTACCGGTCTCGGTCTATGCCATGCATTTTCATTGCAACAGGCTGCTTTGCTAGTTGGTTGACTCCTTGAACTTCCAAGTTGTGAGCCTGAG

Function

symbol description
vps52 Predicted to enable syntaxin binding activity. Predicted to be involved in Golgi to vacuole transport; endosomal transport; and lysosomal transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus. Predicted to be part of GARP complex. Orthologous to human VPS52 (VPS52 subunit of GARP complex).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952807.1 False 2969 mRNA 0.50 19 40472148 40484340
TU1771132 False 750 lncRNA 0.33 3 40408575 40517763
TU1771133 True 369 lncRNA 0.34 3 40408575 40487699

Neighbor

gene id symbol gene type direction distance location
LOC110496235 LOC106588392 coding upstream 7939 40460473 ~ 40464209 (+)
LOC118941159 NA coding upstream 153314 40316169 ~ 40318834 (+)
LOC110496233 brd2 coding upstream 162582 40297053 ~ 40309566 (+)
psb8 psb8 coding upstream 214864 40249188 ~ 40257284 (+)
LOC118941049 NA coding upstream 233722 40236397 ~ 40238426 (+)
LOC110496243 LOC106588384 coding downstream 3614 40487954 ~ 40500744 (+)
LOC110496240 LOC106588375 coding downstream 41545 40525885 ~ 40542149 (+)
LOC110496237 LOC105028059 coding downstream 78630 40562970 ~ 40601009 (+)
LOC110496242 LOC106588382 coding downstream 122950 40607290 ~ 40611845 (+)
LOC110496244 LOC106588385 coding downstream 127556 40611896 ~ 40619490 (+)
G1547816 NA non-coding upstream 473 40392626 ~ 40471675 (+)
G1547834 rps18 non-coding upstream 566 40469109 ~ 40471582 (+)
G1547815 NA non-coding upstream 51752 40417407 ~ 40420396 (+)
G1547840 NA non-coding upstream 56299 40414796 ~ 40415849 (+)
G1547697 LOC106588396 non-coding upstream 149281 40322289 ~ 40322867 (+)
G1547880 NA non-coding downstream 35947 40520287 ~ 40520591 (+)
G1547888 NA non-coding downstream 60135 40544475 ~ 40544828 (+)
G1547910 NA non-coding downstream 77979 40562319 ~ 40562524 (+)
G1547911 NA non-coding downstream 79190 40563530 ~ 40563743 (+)
G1547817 NA other upstream 42628 40427108 ~ 40429520 (+)
G1547788 NA other upstream 144967 40326475 ~ 40327181 (+)
G1547743 NA other upstream 269690 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 365302 40103731 ~ 40110006 (+)
G1547904 NA other downstream 223678 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 253278 40736719 ~ 40738475 (+)
G1548171 ndufb9 other downstream 681214 41165554 ~ 41169102 (+)
G1549270 NA other downstream 1152982 41637322 ~ 41638401 (+)
LOC110496278 LOC106588345 other downstream 1183939 41667929 ~ 41713715 (+)
LOC110496230 abcb3 coding upstream 174039 40228255 ~ 40234536 (+)
LOC118941160 NA coding downstream 106091 40623854 ~ 40626108 (+)
G1547773 NA non-coding upstream 121233 40287052 ~ 40287342 (+)
G1547771 NA non-coding upstream 123261 40284919 ~ 40285314 (+)
G1547770 NA non-coding upstream 124861 40283402 ~ 40283714 (+)
G1547652 LOC106588410 other upstream 367981 40035517 ~ 40040594 (+)
G1547334 LOC107666349 other upstream 647072 39761213 ~ 39761503 (+)

Expression


Co-expression Network