LOC100653472 (LOC100653472)


Basic Information

Item Value
gene id LOC100653472
gene name LOC100653472
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40485361 ~ 40487640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001246345.1
ATGAAAATGCATGGCATAGACCGAGACCGACATGTTATACATCTTCATTGTCTGTGGATTGTGGGCTTTGTGGGCTGTGTTGcctcctcctccctgccctctggccctctctccatctcttcccctgtTGGAAGCCAAGCCATCCTTCCTTGCAAATGGAAGTCCCAGCTAGACAACGTCCCAGTTTGCCACGTCCTATGGCAGACACCCGATGCGCCAGTGTTTGAGCAAAACGGGGAGCAACGGTGGCAGGCCAGCGAGTTTGAGGGGCGGCTGGAGGTACCTGGGGAAAAGCTTTGGGAGGGCGACTGCTCTCTGATCTTGCGCGACGTGCAGTTTGGGGATGTGGGGCTTTACGAGAGCTTCATGGTGGTCGACAGGACAAGGAGGAAAAGGCGGGTGTTCATCCAGAGTGTTCACCTCTCAGTCTATGACCATAAGTCCAAGCTGTCAATGGGCATGGGTGAAGACCTGGTCCTGACGCTCCACACTCCCCAGGCCATGAGAGTGGTCTTCCAAGGGAGGAACAGCACAGAGTGGAAGGTCCTGTGGATGAGGGGTGACGGGAAGGTCAACGGGGGTCGTCTTGAGGAGGCTGAAGGGGTGGTGGTCCTCCGAGGGTTAAGGATGGACAACTCTGGGACTTATAAAGTGTTGGATTCCCATGGGCTTTCCGTGAGCACTGTGAAACTCACAGTGGAAGAAGTTGCTAAAACTCAAAAGATTATCCACATCCAGGACAAACCTGTAGGTAAATCTACTGTTTACAGGTCCTCCTCTCTGCTCATCGTTTTTGTCCTGCTGATCAGTCCTCTGATTCAACATCTCCTCTA

Function

NR:

description
VIG-B319.A protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001246345.1 True 833 mRNA 0.54 6 40485361 40487640

Neighbor

gene id symbol gene type direction distance location
rps18 LOC107726165 coding downstream 13796 40469109 ~ 40471565 (-)
LOC110496236 NA coding downstream 29813 40445255 ~ 40455548 (-)
LOC100136269 LOC106588393 coding downstream 55888 40417575 ~ 40429473 (-)
LOC101268904 LOC106588394 coding downstream 69277 40392620 ~ 40416084 (-)
LOC110496231 LOC106569953 coding downstream 116183 40319045 ~ 40369178 (-)
LOC118941162 NA coding upstream 13098 40500738 ~ 40501410 (-)
LOC118941163 NA coding upstream 14025 40501665 ~ 40503478 (-)
LOC110496249 NA coding upstream 57569 40545209 ~ 40553619 (-)
LOC118941161 NA coding upstream 187829 40675469 ~ 40678077 (-)
LOC110496253 LOC106588368 coding upstream 299187 40786827 ~ 40807771 (-)
G1548439 NA non-coding downstream 114983 40370046 ~ 40370378 (-)
G1548418 NA non-coding downstream 168140 40316985 ~ 40317221 (-)
G1548417 NA non-coding downstream 168778 40316319 ~ 40316583 (-)
G1548413 NA non-coding downstream 173348 40311798 ~ 40312013 (-)
G1548508 NA non-coding upstream 30933 40518573 ~ 40518783 (-)
G1548520 NA non-coding upstream 55351 40542991 ~ 40543403 (-)
G1548521 NA non-coding upstream 57027 40544667 ~ 40544898 (-)
G1548525 NA non-coding upstream 66773 40554413 ~ 40554685 (-)
G1548540 LOC106588374 non-coding upstream 91950 40579590 ~ 40580803 (-)
G1548367 NA other downstream 93478 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 796680 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 854263 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1697560 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1711677 38768097 ~ 38773684 (-)
G1548517 NA other upstream 152535 40640175 ~ 40685641 (-)
LOC118941164 LOC106588367 other upstream 418047 40902519 ~ 40908744 (-)
LOC110496277 LOC106588347 other upstream 1175796 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1827646 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1871508 42359148 ~ 42359628 (-)

Expression


Co-expression Network