LOC110496243 (LOC106588384)


Basic Information

Item Value
gene id LOC110496243
gene name LOC106588384
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40487954 ~ 40500744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572027.2
ATCCATTACCATATACTGTACCATAGGCTTTCTCTATAGTACATTCATTAGGGTTGTCTAGTAATGAATAGAATGCCATCTTCACAGGTGAAATATCATGCGATTATGGGGAAATGTGTCTACCTGCTCACTTTCTTTTATGTTTCTGGACTACGCTTTCTGTCTGCATCAGCTGTGGTCCATTTTGTTCAGGCTGGACAAAATACTTCCCTGTCGTGCAACCTCACAAACAGCAGAGAAATAATCTGGTTCCAAATGCGCTCAGAGGAACTTGTCACCCTTATAACTGTTACCAGGCTATCACGTTTTCTAAATACTGCAGCAGTTATTAATGAGGAAGACACGGGTCACTTTGACACAAAGGAAAACAACAGTTTGGAGATCATTGTGGTGACAGAAGCAGATTTGGGATTGTACTACTGTGCTGGTCGCTACAATGGGACAGTGCGATTTGGAAAAGGCATCCGCCTGACCTTTACAGACGCAGAGGTGGCAGAGAGGGAATTGGTGTCGTGTTGGACTCTCCTGGCCTGTgttgccccagtctcagtcttgTTTGGCACCCTCTGTCTCTTTGGACTCTGTTTCCAGTCAGGTAAAACAACATGTTTGTGCAACACCTGTGTGAACAGGAATTCAAGTCTCAAGGAAGTGGGTCTGCAATATGCCAGTCTGAAGCACACTGGTAATGCCCGCCCCGCTGATCAGCGAGTGCCAGGATTGGCCCAGGGGGATGTCACCTATGCAACAGTGGCCCAATGTGTTCACACAGGCACATGATACATCACATGTACTTCTGACATGGTTCTTGGAATATCCATTCTTGATGGAAATAAGATTGTATTTTGAttcatgcatgtatgtgtgtctctgtaaATATTGAAAAGGCTAATGTAATAATTATTGTTAATGTTCTCCAAAGAATctcaataaaaacattttaaggCAACAGGATATAGAATTAGTTGGATAAAATAATCATATCTTGGGTACCTTGAAAGGCGCAAATAAATGTACTATATTATTAAAGAGCAACTTTTGTAAAATGTAGTTGTACTGTAATAAAACTAAATAAAATACGAACTGTCTGTTAAGGAGTCAAACCG

Function

NR:

description
uncharacterized protein LOC110496243

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572027.2 True 1106 mRNA 0.41 5 40487954 40500744

Neighbor

gene id symbol gene type direction distance location
vps52 vps52 coding upstream 3614 40408575 ~ 40517763 (+)
LOC110496235 LOC106588392 coding upstream 23745 40460473 ~ 40464209 (+)
LOC118941159 NA coding upstream 169120 40316169 ~ 40318834 (+)
LOC110496233 brd2 coding upstream 178388 40297053 ~ 40309566 (+)
psb8 psb8 coding upstream 230670 40249188 ~ 40257284 (+)
LOC110496240 LOC106588375 coding downstream 25141 40525885 ~ 40542149 (+)
LOC110496237 LOC105028059 coding downstream 62226 40562970 ~ 40601009 (+)
LOC110496242 LOC106588382 coding downstream 106546 40607290 ~ 40611845 (+)
LOC110496244 LOC106588385 coding downstream 111152 40611896 ~ 40619490 (+)
LOC118941160 NA coding downstream 123110 40623854 ~ 40626108 (+)
G1547816 NA non-coding upstream 16279 40392626 ~ 40471675 (+)
G1547834 rps18 non-coding upstream 16372 40469109 ~ 40471582 (+)
G1547815 NA non-coding upstream 67558 40417407 ~ 40420396 (+)
G1547840 NA non-coding upstream 72105 40414796 ~ 40415849 (+)
G1547697 LOC106588396 non-coding upstream 165087 40322289 ~ 40322867 (+)
G1547880 NA non-coding downstream 19543 40520287 ~ 40520591 (+)
G1547888 NA non-coding downstream 43731 40544475 ~ 40544828 (+)
G1547910 NA non-coding downstream 61575 40562319 ~ 40562524 (+)
G1547911 NA non-coding downstream 62786 40563530 ~ 40563743 (+)
G1547817 NA other upstream 58434 40427108 ~ 40429520 (+)
G1547788 NA other upstream 160773 40326475 ~ 40327181 (+)
G1547743 NA other upstream 285496 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 381108 40103731 ~ 40110006 (+)
G1547904 NA other downstream 207274 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 236874 40736719 ~ 40738475 (+)
G1548171 ndufb9 other downstream 664810 41165554 ~ 41169102 (+)
G1549270 NA other downstream 1136578 41637322 ~ 41638401 (+)
LOC110496278 LOC106588345 other downstream 1167535 41667929 ~ 41713715 (+)

Expression


Co-expression Network