LOC110496240 (LOC106588375)


Basic Information

Item Value
gene id LOC110496240
gene name LOC106588375
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40525885 ~ 40542149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952808.1
GGGCTTTTTGCGGAAATGTCGTTTCTTGTCTGGATGTCGTCATATGCGAGATGGTTCTGTGGACCGAGTGGATATTAtgaaacaaaataaatacaaaatctaATGTTTCGCGTAAGAAATTATAATTGTATTTTGTACGTCGATGGACCCAATCGCCAACTGAACATCATTCGCTGTAAATCGAATTCGCGgatttatattttttaatataaTCGATCGGTGATTGTCTACACTCCCTCTAATTAACAAACGCCTTGTGGCTATGACTACGGATTTACTATCTGATTTGGATAGTCGTTTCTTCGCTGATAACCTTCTAACAAGCGAGGATTGGGatGCCTGTCTGTACCAGTGTGAgagcatggaggagggagaggacggAGAGTACACGAGAGGACTGAAATATGAAACATCGTTTGACAACGATCTCGTGCTGACCCTTGATCCCGACAATCCCACGTCGCCATGGAGACACCTGGACGACAACCTTCTCACAGGGGACATTCCCGTACTGAAAGATGAAATGACGATAACGCAGCCTTTGCCAGTGGACATGTTGTTCCGGGTGAAGGCGGAGCCTCCCTCCCCTGCCTCCTCGCTGGCCTCCGACTGCTCCCTGACCTCACTCCCAGACTCACAGATCCCAGTGAAAGGAGAGAACCCGCCCACGCCTCCTTATATGTTTGGAGATGTGCTGGCACCACCACTTGACACATGTGAAGTCACGGTGGCCTCTGCACAACTGGCCCGACCACAGTCCAAACTGCCGCCTCAGCAACACCAAACATCAACCCACAATGGCATGGACACACAGGCCACAGtccaccccacTGCGGCCACGATCAAAGCCAGTACCATCCTGAGCAGTAAGCCTCTCATCCAACCCAGGCCTGTGTGTGTAGCGGCTCTCTCCGTCCACCAGGCTCCCAGTCCAGCCAAGGCCCTCATACTGCACAGCCTGCCTAGCAGGGACCAGAGCAGGCCTGTGGTGCTTtcccagtcagtctgtctggggTCTGCGCCAGCCATCGTCAAAATGGAGCCTGTCTCCCCCACCATGCCTCACTGCCATAGCCCCACGGCCCCATTCCCCAGCAAACCCATAGTCCCGGCGTCCTCTCTGCCAGGGAGCAACTGCAACGGCATGGATGTGAGTGTCTGTCAGTCGCATGTCAATCAGTCAATGAAGGTGATGAAGAGGCAGCAGCGGATGATCAAGAACCGGGAGTCGGCGTGCCAGTCACGCAAGAAGAAGAAGGAGTACCTGCAGAACCTGGAGGGCCAGCTGAGGGAGGTGCAGCAGGAGAACGAGCACCTCCGCAGGGAGAACCAGGCCCTGAGGGAGAGGCTTGCCGGGAAAGAGggcAGTGAATCTGGTAACAACAAGAGGGCCGTCTGCGTCATGGCAGTGCTACTGTTCATGACCTTCAGTTTCGGCCCTGTCAGTATCACAGACAGGAAGCTGGAGACGGGGTTACAGGAAGAGGTGGTCCCTCACACAGGAAGACATCTCCTGGAGTTTGAGACGGCTCGGGAACATAGCAGAGTGGAGGAAAGGATAGATcctgaggaggaaggaggagaggatgggtggaagggaggagaggtggagagggaatCCACCGATTCATACCAGTTTAGGAACCTGAGTGACGTGTTCAGCGACGTGAAGGACCTGGTCCTGCAGGACATCGACCGCTATTTCACCTCCAATGACTGCAGGCAGTTCAACCGCTCCGAGTCCCTCAGGCTGGCAGATGAGCTGAGAGGATGGGTCCACAGGCACCAGATCGACAGGAAGAAGTCTGGAGGGAAGCCGAAGATAGTGAAAAAAGCTAAAATAGCGCAGAAAGCGCAGCTTAGGAAGACCAACATCTCCAGATATCTTCCCATCCAGACCCATCGTTCCATTGACAGTCAGATACAAGTGTTCCCTGCTGGTCCAGAGATCAGCTACAGTGACTTCATGGACGCCATCGACCGGCGTGAGGACACCTTCTACGTGGTCTCCTTCAGACGGgATCACCTGCTGTTGCCAGCCATCAGCCACAACAAAACCACACGGCCCAAAATGTCCCTGGTGATGCCGGCTATGTCCGTCAACGaGAGTTTATATAACAAATCCCAGGGCTATGAGATGATGATGCAGGTGGATTGTGAGGTCATGGACACCCGGATCATCCCCATCAAAGCCTCCGCTGTTCCCCCGTCGCTCCGCGACCCCCCTCCCGCTCCCCCCGCCCACCATCACCACAGCAACCACACCTCCCTCCGAGGCCGCCACCATCCCCACACCGGTGGAGCGGCGTCTCCACGGCAACCCTTACCTGCCAGCAGACAGGAGGCCGAGTATTACATCGGCCAGGGGGGCGGGGTTTGAGGTTAGTGAAGGTGAACAAATGAGTGGGGGattggaggagaaaggagagggtaATGGGAGATTGAATAAGTgaagtgagatggagaggaggacttAATAAGGGAGAGTAGGAGGGTTGTAGGAGGCAGATCTGTCAGGGAATAATGGAGGACATCTGTACTAATTGAAACAAATGATTAACAATGAAGTTACGGTGCCACAATGTTGAAACGTTGTCCTAGCAACTCAAAGCAAATGTGTTTTATTCTACTGAAGACTCTGTATATTAATAGACCAATGAGTAATAACCATTTCACAAACCTGATCTGTTCAATAtagaaaaagtttttttttaaaaaggtttACCAATGGCTCCTAACTAAATCATTTCTTAATATATACTTTTTGAAAAACTGCCCAAACATAGACCTAGCAGTTCACTGCACTTAGACACAGCGCAGAATTAATCACTGAAATATATGCAGCTAATGTTAGTGGACTGCTCGtggtttcatttgaggaccatttttttttgtgtgtgtgacggtTCCGTTTTGTATATTCTGTGTTTATCGCTCTCCATTGAAATTCCATTCAGAGGGCTCCTGCAGAAAATTCAGGTCAGATGCTAGTCAGCTTAgatttagttttttttgtttgtttcttttaTTATGTCAAATGTGTTTGGATTTGAATGAGAATTATTTAACTTGTGTGTTTATTGGTTGTAAATATCAATGGTAGCTTTTgagatgttgttttttttctttctttcaaaTTCATAGCTATATTTTGCTCTGTCCTCCTTAACCTCATTATCTTATGGGCACAAACCCTTCCGTTCCTATACTCCAGAAGTTAACACATGGATCGGCCTAAATATATTTGCTTTGAATGCAGACGACCACCTTGATCATACAGCgtgttgtgtgtttgtatatacttgtcatttttttttatcacttGCACAAAGTCTTGCAACATCGAGCTTGATCCACTGTATCTCCATGTAATTAGtgcagaaaaaaaaatatataggctGTGTTAACATCTGAATACATTCTCAATGTCATCAGCAATATAGCGACGTTAAATTACTGACACCTTATTCAGAATCATCCAGGTACTCTGTAATTCTAGAATTGATCGTGTTTCTTATACACGGTTTATGTAATGTAATTCTGTAAGCATCGTTTTCAGttgtatttgttgttgttttttacacccccccccccgctcAACTTGAGTCTTCTGTCCAAAAGTGGTTTCTGAATCATTTTCATTAGTTGCAAACTCTGTCTGTGAACTCTCGCTATGTTTTTGTCTGTCATGCTCTGCCTGAGGAACTGCACACACTTCTTCAGCAAGTGTTTTTGTTCGAGATAATGCCGTTTTACGGGAATACCACCcattgtttttcatttttatataaaaaatagAATTATTCTTATCAAAAGAAATGaaatattaaaaaaatacaattttatatgaAGCTGTACAAGTTATGTTAGGGGGTGTTGAGGTCTCTTTGTTTTTTGTAGTTTTCCCATTTCAGAACCCACTTTAGCCTCGGAACCCACTTTAGCCAATGGGAATACAGGAACACAATGCTACTAGTGATATGGTAAGGTGTTGGATCCAAGACATTCCCTTTTGCATGTACATGTCAatgcactctctcacacaaacacactgcacaTTATATGTACACATACACACGGCAAACACTTTAAGCATGAAAATTGGTGGTTGTAATGGTAGCGATGTACATATGGTCAATGCCTCCTTTTTTTTCTTAAATGAATTTCTAACTTTAAAAATGATCTTTCTCTGATTATACGAGAGGTTTGAACTGCTGCCTTTTTTTGTTTGTAGAAAATGAACATTGAATTTTATAAATAAAgcgatttttttatttaa
>XM_036952809.1
GGCTTTTTGCGGAAATGTCGTTTCTTGTCTGGATGTCGTCATATGCGAGATGGTTCTGTGGACCGAGTGGATATTAtgaaacaaaataaatacaaaatctaATGTTTCGCGTAAGAAATTATAATTGTATTTTGTACGTCGATGGACCCAATCGCCAACTGAACATCATTCGCTGTAAATCGAATTCGCGgatttatattttttaatataaTCGATCGGTGATTGTCTACACTCCCTCTAATTAACAAACGCCTTGTGGCTATGACTACGGATTTACTATCTGATTTGGATAGTCGTTTCTTCGCTGATAACCTTCTAACAAGCGAGGATTGGGatGCCTGTCTGTACCAGTGTGAgagcatggaggagggagaggacggAGAGTACACGAGAGGACTGAAATATGAAACATCGTTTGACAACGATCTCGTGCTGACCCTTGATCCCGACAATCCCACGTCGCCATGGAGACACCTGGACGACAACCTTCTCACAGGGGACATTCCCGTACTGAAAGATGAAATGACGATAACGCAGCCTTTGCCAGTGGACATGTTGTTCCGGGTGAAGGCGGAGCCTCCCTCCCCTGCCTCCTCGCTGGCCTCCGACTGCTCCCTGACCTCACTCCCAGACTCACAGATCCCAGTGAAAGGAGAGAACCCGCCCACGCCTCCTTATATGTTTGGAGATGTGCTGGCACCACCACTTGACACATGTGAAGTCACGGTGGCCTCTGCACAACTGGCCCGACCACAGTCCAAACTGCCGCCTCAGCAACACCAAACATCAACCCACAATGGCATGGACACACAGGCCACAGtccaccccacTGCGGCCACGATCAAAGCCAGTACCATCCTGAGCAGTAAGCCTCTCATCCAACCCAGGCCTGTGTGTGTAGCGGCTCTCTCCGTCCACCAGGCTCCCAGTCCAGCCAAGGCCCTCATACTGCACAGCCTGCCTAGCAGGGACCAGAGCAGGCCTGTGGTGCTTtcccagtcagtctgtctggggTCTGCGCCAGCCATCGTCAAAATGGAGCCTGTCTCCCCCACCATGCCTCACTGCCATAGCCCCACGGCCCCATTCCCCAGCAAACCCATAGTCCCGGCGTCCTCTCTGCCAGGGAGCAACTGCAACGGCATGGATATGAAGGTGATGAAGAGGCAGCAGCGGATGATCAAGAACCGGGAGTCGGCGTGCCAGTCACGCAAGAAGAAGAAGGAGTACCTGCAGAACCTGGAGGGCCAGCTGAGGGAGGTGCAGCAGGAGAACGAGCACCTCCGCAGGGAGAACCAGGCCCTGAGGGAGAGGCTTGCCGGGAAAGAGggcAGTGAATCTGGTAACAACAAGAGGGCCGTCTGCGTCATGGCAGTGCTACTGTTCATGACCTTCAGTTTCGGCCCTGTCAGTATCACAGACAGGAAGCTGGAGACGGGGTTACAGGAAGAGGTGGTCCCTCACACAGGAAGACATCTCCTGGAGTTTGAGACGGCTCGGGAACATAGCAGAGTGGAGGAAAGGATAGATcctgaggaggaaggaggagaggatgggtggaagggaggagaggtggagagggaatCCACCGATTCATACCAGTTTAGGAACCTGAGTGACGTGTTCAGCGACGTGAAGGACCTGGTCCTGCAGGACATCGACCGCTATTTCACCTCCAATGACTGCAGGCAGTTCAACCGCTCCGAGTCCCTCAGGCTGGCAGATGAGCTGAGAGGATGGGTCCACAGGCACCAGATCGACAGGAAGAAGTCTGGAGGGAAGCCGAAGATAGTGAAAAAAGCTAAAATAGCGCAGAAAGCGCAGCTTAGGAAGACCAACATCTCCAGATATCTTCCCATCCAGACCCATCGTTCCATTGACAGTCAGATACAAGTGTTCCCTGCTGGTCCAGAGATCAGCTACAGTGACTTCATGGACGCCATCGACCGGCGTGAGGACACCTTCTACGTGGTCTCCTTCAGACGGgATCACCTGCTGTTGCCAGCCATCAGCCACAACAAAACCACACGGCCCAAAATGTCCCTGGTGATGCCGGCTATGTCCGTCAACGaGAGTTTATATAACAAATCCCAGGGCTATGAGATGATGATGCAGGTGGATTGTGAGGTCATGGACACCCGGATCATCCCCATCAAAGCCTCCGCTGTTCCCCCGTCGCTCCGCGACCCCCCTCCCGCTCCCCCCGCCCACCATCACCACAGCAACCACACCTCCCTCCGAGGCCGCCACCATCCCCACACCGGTGGAGCGGCGTCTCCACGGCAACCCTTACCTGCCAGCAGACAGGAGGCCGAGTATTACATCGGCCAGGGGGGCGGGGTTTGAGGTTAGTGAAGGTGAACAAATGAGTGGGGGattggaggagaaaggagagggtaATGGGAGATTGAATAAGTgaagtgagatggagaggaggacttAATAAGGGAGAGTAGGAGGGTTGTAGGAGGCAGATCTGTCAGGGAATAATGGAGGACATCTGTACTAATTGAAACAAATGATTAACAATGAAGTTACGGTGCCACAATGTTGAAACGTTGTCCTAGCAACTCAAAGCAAATGTGTTTTATTCTACTGAAGACTCTGTATATTAATAGACCAATGAGTAATAACCATTTCACAAACCTGATCTGTTCAATAtagaaaaagtttttttttaaaaaggtttACCAATGGCTCCTAACTAAATCATTTCTTAATATATACTTTTTGAAAAACTGCCCAAACATAGACCTAGCAGTTCACTGCACTTAGACACAGCGCAGAATTAATCACTGAAATATATGCAGCTAATGTTAGTGGACTGCTCGtggtttcatttgaggaccatttttttttgtgtgtgtgacggtTCCGTTTTGTATATTCTGTGTTTATCGCTCTCCATTGAAATTCCATTCAGAGGGCTCCTGCAGAAAATTCAGGTCAGATGCTAGTCAGCTTAgatttagttttttttgtttgtttcttttaTTATGTCAAATGTGTTTGGATTTGAATGAGAATTATTTAACTTGTGTGTTTATTGGTTGTAAATATCAATGGTAGCTTTTgagatgttgttttttttctttctttcaaaTTCATAGCTATATTTTGCTCTGTCCTCCTTAACCTCATTATCTTATGGGCACAAACCCTTCCGTTCCTATACTCCAGAAGTTAACACATGGATCGGCCTAAATATATTTGCTTTGAATGCAGACGACCACCTTGATCATACAGCgtgttgtgtgtttgtatatacttgtcatttttttttatcacttGCACAAAGTCTTGCAACATCGAGCTTGATCCACTGTATCTCCATGTAATTAGtgcagaaaaaaaaatatataggctGTGTTAACATCTGAATACATTCTCAATGTCATCAGCAATATAGCGACGTTAAATTACTGACACCTTATTCAGAATCATCCAGGTACTCTGTAATTCTAGAATTGATCGTGTTTCTTATACACGGTTTATGTAATGTAATTCTGTAAGCATCGTTTTCAGttgtatttgttgttgttttttacacccccccccccgctcAACTTGAGTCTTCTGTCCAAAAGTGGTTTCTGAATCATTTTCATTAGTTGCAAACTCTGTCTGTGAACTCTCGCTATGTTTTTGTCTGTCATGCTCTGCCTGAGGAACTGCACACACTTCTTCAGCAAGTGTTTTTGTTCGAGATAATGCCGTTTTACGGGAATACCACCcattgtttttcatttttatataaaaaatagAATTATTCTTATCAAAAGAAATGaaatattaaaaaaatacaattttatatgaAGCTGTACAAGTTATGTTAGGGGGTGTTGAGGTCTCTTTGTTTTTTGTAGTTTTCCCATTTCAGAACCCACTTTAGCCTCGGAACCCACTTTAGCCAATGGGAATACAGGAACACAATGCTACTAGTGATATGGTAAGGTGTTGGATCCAAGACATTCCCTTTTGCATGTACATGTCAatgcactctctcacacaaacacactgcacaTTATATGTACACATACACACGGCAAACACTTTAAGCATGAAAATTGGTGGTTGTAATGGTAGCGATGTACATATGGTCAATGCCTCCTTTTTTTTCTTAAATGAATTTCTAACTTTAAAAATGATCTTTCTCTGATTATACGAGAGGTTTGAACTGCTGCCTTTTTTTGTTTGTAGAAAATGAACATTGAATTTTATAAATAAAgcgatttttttatttaa

Function

NR:

description
cyclic AMP-dependent transcription factor ATF-6 beta-like

GO: NA

KEGG:

id description
K09049 ATF6B, CREBL1; cyclic AMP-dependent transcription factor ATF-6 beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952808.1 False 4279 mRNA 0.46 17 40525885 40542149
XM_036952809.1 True 4245 mRNA 0.46 17 40525886 40542149

Neighbor

gene id symbol gene type direction distance location
LOC110496243 LOC106588384 coding upstream 25141 40487954 ~ 40500744 (+)
vps52 vps52 coding upstream 41545 40408575 ~ 40517763 (+)
LOC110496235 LOC106588392 coding upstream 61676 40460473 ~ 40464209 (+)
LOC118941159 NA coding upstream 207051 40316169 ~ 40318834 (+)
LOC110496233 brd2 coding upstream 216319 40297053 ~ 40309566 (+)
LOC110496237 LOC105028059 coding downstream 20821 40562970 ~ 40601009 (+)
LOC110496242 LOC106588382 coding downstream 65141 40607290 ~ 40611845 (+)
LOC110496244 LOC106588385 coding downstream 69747 40611896 ~ 40619490 (+)
LOC118941160 NA coding downstream 81705 40623854 ~ 40626108 (+)
LOC118936567 LOC106588378 coding downstream 87380 40629529 ~ 40640690 (+)
G1547880 NA non-coding upstream 5294 40520287 ~ 40520591 (+)
G1547816 NA non-coding upstream 54210 40392626 ~ 40471675 (+)
G1547834 rps18 non-coding upstream 54303 40469109 ~ 40471582 (+)
G1547815 NA non-coding upstream 105489 40417407 ~ 40420396 (+)
G1547888 NA non-coding downstream 2326 40544475 ~ 40544828 (+)
G1547910 NA non-coding downstream 20170 40562319 ~ 40562524 (+)
G1547911 NA non-coding downstream 21381 40563530 ~ 40563743 (+)
G1547926 NA non-coding downstream 39811 40581960 ~ 40582164 (+)
G1547817 NA other upstream 96365 40427108 ~ 40429520 (+)
G1547788 NA other upstream 198704 40326475 ~ 40327181 (+)
G1547743 NA other upstream 323427 40201909 ~ 40202458 (+)
LOC110496221 LOC106588406 other upstream 419039 40103731 ~ 40110006 (+)
G1547904 NA other downstream 165869 40708018 ~ 40717744 (+)
LOC110496251 LOC106569933 other downstream 195469 40736719 ~ 40738475 (+)
G1548171 ndufb9 other downstream 623405 41165554 ~ 41169102 (+)
G1549270 NA other downstream 1095173 41637322 ~ 41638401 (+)
LOC110496278 LOC106588345 other downstream 1126130 41667929 ~ 41713715 (+)

Expression


Co-expression Network