LOC118941161


Basic Information

Item Value
gene id LOC118941161
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40675469 ~ 40678077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037479.1
AGTTGAGAATTAACATACCAGAAGGACTCTAGCTGCAGTTTAGGTGTCCATTGGTTACGACCCTGACGCTTCGAAGACACAGACTGCGTAATTTCATCAATGCTGCATAACATTTTGCGCAGCTACAGACGGTCACATGCGGTTGGACACATGGATGAGAGAATCATTTTCGCAGTGTCCTCAAAACCGTGCCTTTTTGACACAAATGCTGACAGCTACAGGGACTTAAACATAAAAATTGCTGCTTGGAGTCAAGTGTCCACGATAGTTGAATTACCAGGTCAATCTAGTAGTGAACTTGTGCTAGAtgtggctagttagctagctagctaactaacctaGCCAAATGAGAAGAAGACTGtaggaggaagtggagaggacTCGGGGACaagtatcagagagagagagaagggcagagaaagagaagaagaggtctGGGTCAGCAGCTTCAGAGATGGAGTCAATTTAGCCGACCAGCTCacaggaaggacaggaagaggagaggagttgtcTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACATGTCAGTTCTGtttaaattcagtcaattcaTAAAGTCATTTGTTTCTAAAGTCTTAGGATAGCATTCATTATTAGTGTTCCATAGATTTCTGAATTGACGGAATTGAAACTCACACACCGGAGAATTCACAGATGCTCTTGTTGGTCTCTTACCAGACTAAaggtgaatatatttatttcatttaaaaccTCTTGAAAACCAGGGTGTTGAAACTTCACAAAAAGTTATGTTCCATCGACTGGTCCATGACGTCCAGGGGCCATTTGCTTGTTTAGCTGTGTTATGGCTACACATTATTTTCTTctttcagagacagagacacacacacctctcctccagtcctctctgtccctcagATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTACGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGTTATTCTCTTACAGATTACAGGCTGGCTACATGTTATTTTTGGTATTTttacacgcacacatgcacacctctttcaatgttgttttatttttttgtacaaTTTTTACAACACACATGCCTGTCATGTTCTTTCCTGTACTTGAATACTTATTAAATTCTAATGTTTTCATAGTCA
>XR_005037478.1
AGGATGAGTTGAGAATTAACATACCAGAAGGACTCTAGCTGCAGTTTAGGTGTCCATTGGTTACGACCCTGACGCTTCGAAGACACAGACTGCGTAATTTCATCAATGCTGCATAACATTTTGCGCAGCTACAGACGGTCACATGCGGTTGGACACATGGATGAGAGAATCATTTTCGCAGTGTCCTCAAAACCGTGCCTTTTTGACACAAATGCTGACAGCTACAGGGACTTAAACATAAAAATTGCTGCTTGGAGTCAAGTGTCCACGATAGTTGAATTACCAGGTCAATCTAGTAGTGAACTTGTGCTAGAtgtggctagttagctagctagctaactaacctaGCCAAATGAGGTGTGTGTGAAAGATAGATAGTAACATAAATAATGCTAGATACTACCCCTGATAACTTGGCCAAATAATCATGTTTGAAAGAGTGtgaatgtgagagagtgtgagtgtgtatgagagagtgtgagtgtgtatgtgagagagtgagtgtatATGTAAGATAAATAGTAATTGTGTTCGATACTACCCCTGATCATTTGGTCAGATAACCGTGTGTGTACAGTAGGTGACATGTCCATGATAGCTATCTAATAACTATAGTTAATCTAGGTAATGGTTTGGCTTATCATGTTCATGTCTATGTAGAAGAAGACTGtaggaggaagtggagaggacTCGGGGACaagtatcagagagagagagaagggcagagaaagagaagaagaggtctGGGTCAGCAGCTTCAGAGATGGAGTCAATTTAGCCGACCAGCTCacaggaaggacaggaagaggagaggagttgtcTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACATGTCAGTTCTGtttaaattcagtcaattcaTAAAGTCATTTGTTTCTAAAGTCTTAGGATAGCATTCATTATTAGTGTTCCATAGATTTCTGAATTGACGGAATTGAAACTCACACACCGGAGAATTCACAGATGCTCTTGTTGGTCTCTTACCAGACTAAaggtgaatatatttatttcatttaaaaccTCTTGAAAACCAGGGTGTTGAAACTTCACAAAAAGTTATGTTCCATCGACTGGTCCATGACGTCCAGGGGCCATTTGCTTGTTTAGCTGTGTTATGGCTACACATTATTTTCTTctttcagagacagagacacacacacctctcctccagtcctctctgtccctcagATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTACGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGTTATTCTCTTACAGATTACAGGCTGGCTACATGTTATTTTTGGTATTTttacacgcacacatgcacacctctttcaatgttgttttatttttttgtacaaTTTTTACAACACACATGCCTGTCATGTTCTTTCCTGTACTTGAATACTTATTAAATTCTAATGTTTTCATAGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037479.1 False 1208 mRNA 0.42 3 40675469 40678071
XR_005037478.1 True 1517 mRNA 0.41 2 40675469 40678077

Neighbor

gene id symbol gene type direction distance location
LOC110496249 NA coding downstream 121850 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 171991 40501665 ~ 40503478 (-)
LOC118941162 NA coding downstream 174059 40500738 ~ 40501410 (-)
LOC100653472 LOC100653472 coding downstream 187829 40485361 ~ 40487640 (-)
rps18 LOC107726165 coding downstream 203904 40469109 ~ 40471565 (-)
LOC110496253 LOC106588368 coding upstream 108750 40786827 ~ 40807771 (-)
LOC110496254 col14a1 coding upstream 136750 40814827 ~ 40901992 (-)
LOC118941164 LOC106588367 coding upstream 225679 40902519 ~ 40908744 (-)
ndufb9 ndufb9 coding upstream 487462 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 547608 41225685 ~ 41327540 (-)
G1548581 NA non-coding downstream 22227 40651342 ~ 40653242 (-)
G1548571 NA non-coding downstream 54114 40621122 ~ 40621355 (-)
G1548568 NA non-coding downstream 57432 40617201 ~ 40618037 (-)
G1548559 NA non-coding downstream 65649 40609535 ~ 40609820 (-)
G1548557 NA non-coding downstream 69328 40605927 ~ 40606141 (-)
G1548612 LOC106588371 non-coding upstream 58687 40736764 ~ 40740990 (-)
G1548613 NA non-coding upstream 64656 40742733 ~ 40743516 (-)
G1548627 NA non-coding upstream 82268 40760345 ~ 40760570 (-)
G1548631 NA non-coding upstream 105901 40783978 ~ 40786646 (-)
G1548647 NA non-coding upstream 153288 40831365 ~ 40831747 (-)
G1548367 NA other downstream 283586 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 986788 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1044371 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 1887668 38776284 ~ 38787801 (-)
G1546385 LOC106588448 other downstream 1901785 38768097 ~ 38773684 (-)
LOC110496277 LOC106588347 other upstream 985359 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1637209 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1681071 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 2216954 42895031 ~ 43015119 (-)

Expression


Co-expression Network