LOC118941164 (LOC106588367)


Basic Information

Item Value
gene id LOC118941164
gene name LOC106588367
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40902519 ~ 40908744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952832.1
AGCTCTTATTGCCTACCCTGGGATAGCCTGGCAACAAGTcatccctcaacccctcccactccctcccggCCAGCCTAGACTGTTTACTCTCTCTGGGGGTTAACAGTTAACATTTATACCGGAGCACCACAGCTGACTACATCATCAGAGATTGTGGACAGCAACCTTCCCAAGTTACTTGGCACTTTGGCTGGTAAACCTTTGAAGTGAATTGTACAATGGGACCTCGGACAGCTGtcaCTCCATCTAAGGAAAGAAAGATGGTGCCCGGGGGGCAAGATAACAGTTTTAGTAGTGGCAACAGCGGGTATTGTAACAGAGGTCCCATGCTTAGCCCTACTTCACCTGTGCTGTCAAACCCCAAATCAGTGCTAAAGAGACATGTAAGTCCAGAGGAGCTTCGGAGACCAGGAGGTTCATACATAAAGAGGACGTTTACAATTGTGGGTGATGCGGTGGGCTGGGGCTTCGTGGTCAGGGGGAGTAGACCATGTCATATCCAGGCAGTGGACCCCAGTGGCCCTGCAGCAGCAGTAGGAGTGAAAGTGCGCCAGTTTGTGGTCTCTGTCAATGGTCTGGACGTCCTGTCTCTGGACTACAAGACGGTCAGCAACCTCATCCTCACTGGATCGCGGACCGTGGTCATGGAGGTTATGGAGGAGTCTGATTGCTGAGGATGAGGTTGTATTGTATTCGGTTACAGTCAACTTAAGGCCTCAGTAACCCATTGGCTCTTGGTGGTCGAAAGCTTAAGAGTAAGAATGTGGACTGTATTGGCCGAAATAAATCCATAGATACCTTACGACCTTGATATGGAGCCAAATGGACTTAGCTACATGATGGACTTGAGACGCGGGGTAAAAGCAACAGAAACCTGACGAGCCCCACTGTGAAGCCGTGTGTGCTTACATCATCAGTCTGAGACTCTGGCCAGTGTTCCGTGGTTAACATGGATACAGCTTGTGTTTTTTTTGCTCTCCCACAGCAGTTTAGACTTTTGACCTGTGCGCCTGCTGTTTGCTTTTCCACCCACTCCCTCGTTTGCTCCAATGGAGGGTTCCTTCCTAGAAAGACAAGTACTTAGGGTGTTGTTGATTAAGTGAGGTGGCACATATTGTCAACAACACTGCACTTTGTGACTTGGCAGAGGTGTTTTTGAGAGCAGTAGAATTTCTTTCGATGATTTAGCTTTGCTTGGAATATGTTTGGCATTGAATGCTAAAGTTTGGTAGCAGGAGTAACTTAAACCTTGTATTCATATTGGACTGAAAATAGCACAATACTGTCAAACTGCAGATCACATACTTTCTGGCAGCATAAAAAGGCTTGGATGTCATCTTGGTTTCTGATTCCACTGCAATATTTTTTGGAAACCCACAATACTGATAAAAGTTCAAATAATCAAACAGTAGTAGCCTATCAACATGTTAATCCTTTTTTAAAATTTCTTTTGAAACAACAAATCCGTGTGTTATGTTAATGCACATAGATAGGTTATAGCAGTGATATTGTGCATTTTGTCAAATGTGTCAAGGGTAATGCATGATCACATAGTCTAACACAAGGTATAAAGGACCCAAAGCACTAAAGGAGTTGTACTTTCATATAGCCATATAGCCCGACCCTAAACAGTTGTTATGGTCAACTGATCTTTAAAGGGTATTAGTGCAGACCAGGCCAGCAAAGAGTATCTGAATTTGTGTTAGCGTCTGATCAGTGTGAAAATATTTCAATTAGCCAATGaattaataaaaataaagtaATTTAATGGaaaatgttagcaaatgtgtATTTGAATCAATGTTTATGATATTAAAGCAATAACATGATTCATCACTTGCAAATAATCAATCTTATTATTGTTAAAAATCAGGGCTCACGTCAACGGAAGCAAATTATTTTAGCAACATCACCAGAAAATCAATATTATGGATAGAAATGTAACCGCTTCAATCGAATAGCAATAAAGTAAGAGCATTTATTGAACCCTGACGGGAACTTTAAACTGCAATAAAAGTTCAAATAACATTGAAGATCAAGATCAACAGGATCATATTGGCATTCCTAGATTAAGTGGTTATAATATCTGGTCAAGGAGTGTGCATTGTGCAATAAAATCTGTAGATGGCATGTGAACTATAACAACATTCAATCACGTAAGCAGACTATATGGCTCTGACCACCAGGTGGCAGTATGTACCATATATACAACTGATATTTCCCAATTGGATCTCATTGACTGAATATCCAAATCTCTTTTACAGGCATTTTACTGTAAATACCTTTCCAGTACTTTGAGAAGTTGTTTTGTTTGTCATGTTTGATTGATGTCACTTTTGCCACAATAATATTACAATAACAAACCACAAGCTGCATTATATTTTTCCTGCAATATTAGTAGGGTCGCTATCACTACAGATGACTAAAATATCCAGATTCGTGCCTGTTAGTGTAGGAAACTTATGTTAAGATAACCCCTCTGCTGCCCTCATCAGAGTTCAGGGGCCAAGGGTTTAAGTGCAGTAGCATGGAATGCTCTTAAGATGGGTCAGGGCTTGTGTCAAGGGCAGACATTGTGAGCTACTTCAAACTCCATCTAGTGATGAGCTCAGCATTATGAACGCACAAAGATATTCAAAAGCAAAAAGAGGAAGTGATAGTGTAACCATAtcctactgtaactacagtaacaactGTGAATTCTATAACTGCAGGAATGTTAACCCCATATAAGGGGCCTCCAATAAAAAAAGAGTTGAAGAGGGATTCCACAggtaattgatttaaaaaaagatgaTTCTTTATCACTTCTGTCATGACCATGACCTTGCTGTCATAGCGATGCATAAAACTCAGCGTACCTAACTACCCCTCTGTGCTTGTAGAAACACATTCGACATTGGGTCAACTGGGAAAGGTGTGTAGCCCAAGGGGCTCTTGTAGACCCTATAACTTCATGGGGCTAACCATGCTAACATACTGTATTCAGTCACAGTCTGCCTTTAGTCAATGATGTGTTAACTGCCCATCGATGAGTGGGAAGTAGTTTGCTGTGAGATGGTCTAATAAAAACAGCTCCAGTATCTAGAAGTTACTCAGATAAGTCAAAACTACTATCTTTTTCAACAGCAAGAGTAGAGTCTGTGTGTTTGGAACCATTTCAATAAAAAATACTATATTTATTGAGTGAAGCATTAAACTTCATTGGATATTCATTCAAAGAAAATGTAGGCTGCACCAGAGTGCCATTCCACTCATAACACCAAAGTGGCAAATTCGGGGGTAACCTGACAGGCCTCTTGAAGTAGATGCTAGGTTGCATTAAGGTTGCTGCAACATGATCAATGTGAGTGGTACTTTCTGTATCTTAACTTGGGTCtgtgctatccgggatccttgggacgtcactaccccattgaagttgacattttaaatggttacggtgagggttgaggttagggctcggtaagggttatggttaaggttagggtttagggtagggacgtccAAAAGATACCGGATTGCACTGACCGCTTAACTTGACACAGATAGGGGCTTATCATGAAAGGCATTAACACATTTAATGTGGTCAAGATAGGTAGTTAGTTCATTTTAACAAAGTCACTTTCCAGAAATTATTTTATTTCTTACCCAACCAATCAAATACATTACAGACTGATGGTACAtacaaacgtttggacacacctactcatt
>TU1772025
CGGAGCACCACAGCTGACTACATCATCAGAGATTGTGGACAGCAACCTTCCCAAGTTACTTGGCACTTTGGCTGGTAAACCTTTGAAGTGAATTGTACAATGGGACCTCGGACAGCTGgacaatgacccaacacacctccaggctgtgtaagggctatttgacaaagagggagaatgatggagtgctgcatcagatgacctggcctccacagtcatctgacctcaacccaattggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaatataacatatattttgatttgtttaacacttttttggttactacatgatatgttatttcgtagttttgat
>TU1772024
CGGAGCACCACAGCTGACTACATCATCAGAGATTGTGGACAGCAACCTTCCCAAGTTACTTGGCACTTTGGCTGGTAAACCTTTGAAGTGAATTGTACAATGGGACCTCGGACAGCTGTGCTAAAGAGACATGTAAGTCCAGAGGAGCTTCGGAGACCAGGAGGTTCATACATAAAGAGGACGTTTACAATTGTGGGTGATGCGGTGGGCTGGGGCTTCGTGGTCAGGGGGAGTAGACCATGTCATATCCAGGCAGTGGACCCCAGTGGCCCTGCAGCAGCAGTAGGAGTGAAATTTGTGGTCTCTGTCAATGGTCTGGACGTCCTGTCTCTGGACTACAAGACGGTCAGCAACCTCATCCTCACTGGATCGCGGACCGTGGTCATGGAGGTTATGGAGGAGTCTGATTGCTGAGGATGAGGTTGTATTGTATTCGGTTACAGTCAACTTAAGGCCTCAGTAACCCATTGGCTCTTGGTGGTCGAAAGCTTAAGAGTAAGAATGTGGACTGTATTGGCCGAAATAAATCCATAGATACCTTACGACCTTGATATGGAGCCAAATGGACTTAGCTACATGATGGACTTGAGACGCGGGGTAAAAGCAACAGAAACCTGACGAGCCCCACTGTGAAGCCGTGTGTGCTTACATCATCAGTCTGAGACTCTGGCCAGTGTTCCGTGGTTAACATGGATACAGCTTGTGTTTTTTTTGCTCTCCCACAGCAGTTTAGACTTTTGACCTGTGCGCCTGCTGTTTGCTTTTCCACCCACTCCCTCGTTTGCTCCAATGGAGGGTTCCTTCCTAGAAAGACAAGTACTTAGGGTGTTGTTGATTAAGTGAGGTGGCACATATTGTCAACAACACTGCACTTTGTGACTTGGCAGAGGTGTTTTTGAGAGCAGTAGAATTTCTTTCGATGATTTAGCTTTGCTTGGAATATGTTTGGCATTGAATGCTAAAGTTTGGTAGCAGGAGTAACTTAAACCTTGTATTCATATTGGACTGAAAATAGCACAATACTGTCAAACTGCAGATCACATACTTTCTGGCAGCATAAAAAGGCTTGGATGTCATCTTGGTTTCTGATTCCACTGCAATATTTTTTGGAAACCCACAATACTGATAAAAGTTCAAATAATCAAACAGTAGTAGCCTATCAACATGTTAATCCTTTTTTAAAATTTCTTTTGAAACAACAAATCCGTGTGTTATGTTAATGCACATAGATAGGTTATAGCAGTGATATTGTGCATTTTGTCAAATGTGTCAAGGGTAATGCATGATCACATAGTCTAACACAAGGTATAAAGGACCCAAAGCACTAAAGGAGTTGTTATGGTCAACTGATCTTTAAAGGGTATTAGTGCAGACCAGGCCAGCAAAGAGTATCTGAATTTGTGTTAGCGTCTGATCAGTGTGAAAATATTTCAATTAGCCAATGaattaataaaaataaagtaATTTAATGGaaaatgttagca

Function

NR:

description
DEP domain-containing mTOR-interacting protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952832.1 False 3714 mRNA 0.41 5 40903756 40908744
TU1772025 False 374 lncRNA 0.44 2 40902519 40908625
TU1772024 True 1484 TUCP 0.43 5 40905687 40908625

Neighbor

gene id symbol gene type direction distance location
LOC110496254 col14a1 coding downstream 1764 40814827 ~ 40901992 (-)
LOC110496253 LOC106588368 coding downstream 95985 40786827 ~ 40807771 (-)
LOC118941161 NA coding downstream 225679 40675469 ~ 40678077 (-)
LOC110496249 NA coding downstream 350137 40545209 ~ 40553619 (-)
LOC118941163 NA coding downstream 400278 40501665 ~ 40503478 (-)
ndufb9 ndufb9 coding upstream 256795 41165539 ~ 41169132 (-)
LOC110496267 LOC106588355 coding upstream 316941 41225685 ~ 41327540 (-)
LOC110496269 LOC106588349 coding upstream 621999 41530743 ~ 41531326 (-)
LOC110496931 LOC106588283 coding upstream 623587 41532331 ~ 41533462 (-)
LOC110496274 NA coding upstream 729510 41618290 ~ 41645613 (-)
G1548658 NA non-coding downstream 52933 40850617 ~ 40850823 (-)
G1548647 NA non-coding downstream 72009 40831365 ~ 40831747 (-)
G1548631 NA non-coding downstream 117110 40783978 ~ 40786646 (-)
G1548627 NA non-coding downstream 143186 40760345 ~ 40760570 (-)
G1548613 NA non-coding downstream 160240 40742733 ~ 40743516 (-)
G1548739 NA non-coding upstream 92371 41001115 ~ 41073864 (-)
G1548824 NA non-coding upstream 222715 41131459 ~ 41131992 (-)
G1548845 NA non-coding upstream 273322 41182066 ~ 41182287 (-)
G1548848 NA non-coding upstream 295227 41203971 ~ 41205357 (-)
G1549043 NA non-coding upstream 441339 41350083 ~ 41350320 (-)
G1548517 NA other downstream 218115 40640175 ~ 40685641 (-)
G1548367 NA other downstream 511873 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1215075 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1272658 39625771 ~ 39641803 (-)
G1546396 LOC106588446 other downstream 2115955 38776284 ~ 38787801 (-)
LOC110496277 LOC106588347 other upstream 754692 41663436 ~ 41671516 (-)
G1550177 LOC106569881 other upstream 1406542 42315286 ~ 42316079 (-)
G1550202 NA other upstream 1450404 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1986287 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 2722262 43624763 ~ 43668196 (-)

Expression


Co-expression Network