LOC110496931 (LOC106588283)


Basic Information

Item Value
gene id LOC110496931
gene name LOC106588283
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41532331 ~ 41533462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469624.2
ctggACCCATAGTTATATGGTCAAAAGgctctggttaatagtagtgctataaatagggaatagggtgccatttaggccTGATTTGATGACATGATGATGGCTAGTAATTCCACTATTAACAACAACAAACGAACATGCTCCTCTGAAACCAAACCTTTTCTTTAGGTTTaattgaagatattggtacattaTGCAGACACATAAATAAAATGTGATATCatacaatataaacacaattCAATTACAAGATCAGCCTAACTACATGGACAGATGTTTGGTGTCTTGTAGTATTTCTTCAACTTAGAGAAAATAATCCTTTATTGTTTATTCATTAAGATCATGATCCCACCCTGGACCAGGAGGACCCAGTCCTTGTTCAGGTAAgaatactgtaggcctatcaATAGTCTGGGTACCGGTCggtttctgctctcttgccaatTCCATTGTGGCAAAATGATATTTGCATGACAATCCCATAAGAAGTTGTCAGAGAGCTGAAACCGCCTGGCACCCAGGCTATAACAATACTGCTTCATTATCAGGACTGGTTCAATAACAATCTGACATTCAAACTGTAATTTTACTGACTTGAAAATGGATCCTGATTTATTCCTTAGGTTGTGGATGAGGAGGTTGGGCAGCGTCCCTGTCTGGCTTTAGTCCCTTGGTCTGGACCTCTGTGGGTTCCCAGCTCTCTGACTTATTACCTTACCCTTGCTGGGAGGATGATAGTGAGAGAGCTGGCAGTGTTAAACACACAGATTTTCATGATGGAGCAGCCTATTTCCATCTGTTTCACTCCTGTAGGGAGGATGGTGTGGGAGGAACTgacttctcaaactgaacaggtAGCCATTCATATGCAGATACTT

Function

NR:

description
uncharacterized protein LOC110496058

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469624.2 True 875 mRNA 0.41 3 41532331 41533462

Neighbor

gene id symbol gene type direction distance location
LOC110496269 LOC106588349 coding downstream 1005 41530743 ~ 41531326 (-)
LOC110496267 LOC106588355 coding downstream 204791 41225685 ~ 41327540 (-)
ndufb9 ndufb9 coding downstream 363199 41165539 ~ 41169132 (-)
LOC118941164 LOC106588367 coding downstream 623587 40902519 ~ 40908744 (-)
LOC110496254 col14a1 coding downstream 630339 40814827 ~ 40901992 (-)
LOC110496274 NA coding upstream 104792 41618290 ~ 41645613 (-)
LOC110496275 LOC106588348 coding upstream 117115 41650577 ~ 41662876 (-)
LOC110496277 LOC106588347 coding upstream 134798 41663436 ~ 41671516 (-)
LOC110496279 LOC106588343 coding upstream 171063 41704525 ~ 41721962 (-)
LOC110496281 LOC106588342 coding upstream 189852 41723314 ~ 41752064 (-)
G1549241 NA non-coding downstream 30038 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 46953 41485019 ~ 41485378 (-)
G1549194 NA non-coding downstream 58777 41473318 ~ 41473554 (-)
G1549187 NA non-coding downstream 63729 41468330 ~ 41468602 (-)
G1549174 NA non-coding downstream 73495 41458389 ~ 41458836 (-)
G1549861 NA non-coding upstream 116026 41649488 ~ 41649719 (-)
G1549888 psb4 non-coding upstream 308250 41841712 ~ 41843057 (-)
G1549939 LOC106588337 non-coding upstream 338665 41872127 ~ 41873029 (-)
G1549941 LOC106588337 non-coding upstream 340595 41874057 ~ 41875450 (-)
G1548517 NA other downstream 846690 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1140448 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1843650 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 1901233 39625771 ~ 39641803 (-)
G1550177 LOC106569881 other upstream 781824 42315286 ~ 42316079 (-)
G1550202 NA other upstream 825686 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1361569 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 2097544 43624763 ~ 43668196 (-)

Expression


Co-expression Network