LOC110496274


Basic Information

Item Value
gene id LOC110496274
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41618290 ~ 41645613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037483.1
tattGAGCaaggctagaggctctacagtgaaataagacaataatcactaaccagaacagcaatggacaggGAATATTGACATTAATACTAATACTATGTTGATGATTCGGCCCAAAGGACACCATATTTCCTACTACACTACTTTAGCCCAGTGCACTAATTAGGGAACATACAAGGCGGGATTCCCAGGGGGGACGGGGACACACACGATCCCCCCCATCCTGGGAAAAATAAGTAAGTTGTTCAAACAAAGGATATGTTAGACATTTCTTTACTTCTACCACTCAATACAAGAAAACACATTTATAACCGTCACCAGTCTTCATTTTTTTGCTGCATTAAATGACAGGTCACTATGTTAGCTAGCGGTTAACTGATGTTTGCTAGCTGTCTACAGTAACGTCAACCAGTGTTTGCAGCTATTTGAATTTAAGTCAATGAGAGAAGCTAGCAATGCAATGTAGTGTTCCTTAGCTGGCAAGGTGACAGAGTGTTCGTGTCTACCGTCTGAAAGGCACTCAATGCACGTAATCCAGTCAATCGCACCATAGCGATATTGTTTTATGTTGGCAGGGTTCTGTTGATGAATAGTTACATGAGAAACGAGACCAAGTTGAGACTCTTGACAAGGCGGATACGGTATAGTAAAGGCCATTTATTCAAGCGTAATGATATTTGGTAAAGCGTGCTGCACGGCCCCCATTCGTCCAGCTCTTAGGGAGCTTTCGGAAGAAGAGAGCTAAAAACATATTGTGCAGTTCATTTTATGCATTGAAATGACGTAGGTAGATTCTGGTAGTCCTGGCTTCTGGTAGGTTTCTTGTaggtgatagacagtcctctccagCCTGGTGTCAGTATCCCATTGGTTCTCGACAGAGTTGTTTGTCTTTGGAGCCCCTCCCGAAGGGTtttgagtgtgtgcgtgtatttATGGGTTTCAGTGTGTACGTTATCTTAGTCAGCCACCAGTGCGGGGGGATTCCAGTGCAGTTAGTATatacagaaaacagagagagggggaaggtataACACAGAGTGCAAGCCAAAATTGCATGGTTAGGCCACAGGCAGACAACAGTCAGTGAATGCGTTATTACATGTGTTAATATGTTAttacagttcacacacacacaatagctgaatttgcagagctagcGAGCAAACCAAAGctaacattaactatcaagctagatTGTACCTATTCCATTTATGTGGCGTCGTCAGAGATGGAATCTTTGCTATTGTCAGTTTATTCCAAGATCAGCATGCAGCTGTAGTGCTTCGAAGTCCCTGTGATAAGGTTAGTGAcaaactgaacagaactacactCTCTTCTACCATTGTCTTATATCTTTAATGGTCTCGTTGCAAAAGCTAAATTGTCGATAGGggactttgatgcacctgtgtgCCGATCTTGGAGTAAACTGACGATAGCAAAGATTATATGCAAATTCAGCTATTGTTGGAAGCCAgccaataaaaaaacaaacaatattcAAATTACAAAAGGTTGCAACTTACGTTGTGTAAATGGTGAAGTCATACAGCTGTCAACCCTTGTCACTGTAACCCGTTTCACATTTGCTAGCcgactagctagctaccttttagATCAAAGTCCATCTAGAATGATAGAAGCCCAGCTACTGTAAATAACctgcacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagccagtCAGGCAGAAAAAAGACGgacatcagagtatttttttcAGTACACCAAAATGCAAAGCAGAGCAGGCCACATATGGCACACAGACGGAGCTGGGGACAGatgggcagggacagactggcagagacagggaatCTCAGCTCAGTTTGGGACCCTTAATCCAGGCTGGACAGGAGGAAGTCAACCGGCATTTCTAGATTCTCCATCACCTGCCACGAGAGCCTCTGTGGGCTTTCATAGATGGACTCATCGAGGTTGAAGATGGAGTCCAACCACGCCTTCATCTGATCCTGACGACAACAGACACATCATCAACAAATAGTTAATGACCAGCTACAAAGATAAGGATGACAAACCATCACACAcagttcgagagagagagagagagagagagagggagggagaataaataaataaatatgcaccTTAATGAGGAGGTAGAAGTTCCCAGCAGACTCTGTCCAGGCTCCTCCAGGAGGGTGAATCCTCATCATCACTTCCATGAGCAGATAAAAGAAGGTGCCAGGCCTCTGGAGTAGGAACAGGGGACATGAGTGAGTGTCTACAGACCTGGTATGGCTACAGTGTGGATAGGGTAGATAAACAACAGGATGTTTACATTATTAGGGCCACTTACAGATGTTGGAATAGATTTTTTTCCTTCAAGAAGGCTCAGTAGAACGAATTCATAAAATACATCTGTGAAATTGATGTGGTTGATCTGAAGTCAAACAAATAAGATAATTACATCTTTTTCATTGACAAGCACTTTAGAAAGTCTCATTGAGTAGATGTTGGATGAGCAGACGGTGCCTGCAGCTAACGCTCATGCTTGCATGTAAACCTACTCCTACAAGAGCCATCTCCAGCTCTAGTTGCTCCCTGTTTGCTGGCTCATTAATGAAGTTCACCAGGGTGTCGTAGGCCTGCTGAAACTGCCTCACATCCTCAAAACAAAACCATCATAAAATTCCTTAGAACTTGGATCATAAACTCAAAGATTCAGGTCTGTAATTCAGAGGGCTGTTTGGCTTGTAAGAGATTGGATCTTTTCAACTAAACCTTATGAATCACTATTGCCTAAATGTAAGCCACTGGGTAAAGacttgaatcaacgttgtttccttgtcatttcaacaacaaaaatgtaatgtgatgatggtgaatcaacatggaaaactgattggaattgaaaaaagtcatcaacatatttttttcaCCAAACTTTTAACCTAAGTCCAATGACATGGTAGATTTGTTgtattgatttcacattgaattcaaattggttgacaactcaaccaaatgtaactAAACACGACACGCtgaaatgacgtctgtgcccagtgggaactatatatctggtctgatgaatgctGTACAATTATGTGAACGGTTACCT
>TU1773358
CCACCAGTGCGGGGGGATTCCAGTGCAGTTAGTATatacagaaaacagagagagggggaaggtataACACAGAGTGCAAGCCAAAATTGCATGGTTAGGCCACAGGCAGACAACAGTCAGTGAATGCGTTATTACATGTGTTAATATGTTAttacagttcacacacacacaatagctgaatttgcagagctagcGAGCAAACCAAAGctaacattaactatcaagctagatTGTACCTATTCCATTTATGTGGCGTCGTCAGAGATGGAATCTTTGCTATTGTCAGTTTATTCCAAGATCAGCATGCAGCTGTAGTGCTTCGAAGTCCCTGTGATAAGGTTAGTGAcaaactgaacagaactacactCTCTTCTACCATTGTCTTATATCTTTAATGGTCTCGTTGCAAAAGCTAAATTGTCGATAGGggactttgatgcacctgtgtgCCGATCTTGGAGTAAACTGACGATAGCAAAGATTATATGCAAATTCAGCTATTGTTGGAAGCCAgccaataaaaaaacaaacaatattcAAATTACAAAAGGTTGCAACTTACGTTGTGTAAATGGTGAAGTCATACAGCTGTCAACCCTTGTCACTGTAACCCGTTTCACATTTGCTAGCcgactagctagctaccttttagATCAAAGTCCATCTAGAATGATAGAAGCCCAGCTACTGTAAATAACctgcacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagccagtCAGGCAGAAAAAAGACGgacatcagagtatttttttcAGTACACCAAAATGCAAAGCAGAGCAGGCCACATATGGCACACAGACGGAGCTGGGGACAGatgggcagggacagactggcagagacagggaatCTCAGCTCAGTTTGGGACCCTTAATCCAGGCTGGACAGGAGGAAGTCAACCGGCATTTCTAGATTCTCCATCACCTGCCACGAGAGCCTCTGTGGGCTTTCATAGATGGACTCATCGAGGTTGAAGATGGAGTCCAACCACGCCTTCATCTGATCCTGACGACAACAGACACATCATCAACAAATAGTTAATGACCAGCTACAAAGATAAGGATGACAAACCATCACACAcagttcgagagagagagagagagagagagagggagggagaataaataaataaatatgcaccTTAATGAGGAGGTAGAAGTTCCCAGCAGACTCTGTCCAGGCTCCTCCAGGAGGGTGAATCCTCATCATCACTTCCATGAGCAGATAAAAGAAGGTACCAGGCCTCTGGAGTAGGAACAGGGGACATGAGTGAGTGTCTACAGACCTGGTATGGCTACAGTGTGGATAGGGTAGATAAACAACAGGATGTTTACATTATTAGGGTCACTTACAGATGTTGGAAGAGATGTTTTTCCTTCAAGAAGGCTCAGTAGAACGAATTCATAAAATACATCTGTGAAATTGATGTGGTTGATCTGAAGTCAA

Function

NR:

description
uncharacterized protein LOC110496270 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037483.1 False 3109 mRNA 0.42 3 41638254 41645613
TU1773358 True 1473 lncRNA 0.44 4 41618290 41644648

Neighbor

gene id symbol gene type direction distance location
LOC110496931 LOC106588283 coding downstream 104792 41532331 ~ 41533462 (-)
LOC110496269 LOC106588349 coding downstream 106928 41530743 ~ 41531326 (-)
LOC110496267 LOC106588355 coding downstream 310714 41225685 ~ 41327540 (-)
ndufb9 ndufb9 coding downstream 469122 41165539 ~ 41169132 (-)
LOC118941164 LOC106588367 coding downstream 729510 40902519 ~ 40908744 (-)
LOC110496275 LOC106588348 coding upstream 4964 41650577 ~ 41662876 (-)
LOC110496277 LOC106588347 coding upstream 22647 41663436 ~ 41671516 (-)
LOC110496279 LOC106588343 coding upstream 58912 41704525 ~ 41721962 (-)
LOC110496281 LOC106588342 coding upstream 77701 41723314 ~ 41752064 (-)
LOC110496283 LOC106588340 coding upstream 133948 41779561 ~ 41812159 (-)
G1549241 NA non-coding downstream 135961 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 152876 41485019 ~ 41485378 (-)
G1549194 NA non-coding downstream 164700 41473318 ~ 41473554 (-)
G1549187 NA non-coding downstream 169652 41468330 ~ 41468602 (-)
G1549174 NA non-coding downstream 179418 41458389 ~ 41458836 (-)
G1549861 NA non-coding upstream 3875 41649488 ~ 41649719 (-)
G1549888 psb4 non-coding upstream 196099 41841712 ~ 41843057 (-)
G1549939 LOC106588337 non-coding upstream 226514 41872127 ~ 41873029 (-)
G1549941 LOC106588337 non-coding upstream 228444 41874057 ~ 41875450 (-)
G1549942 NA non-coding upstream 255562 41901175 ~ 41923079 (-)
G1548517 NA other downstream 952613 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1246371 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1949573 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 2007156 39625771 ~ 39641803 (-)
G1550177 LOC106569881 other upstream 669673 42315286 ~ 42316079 (-)
G1550202 NA other upstream 713535 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1249418 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1985393 43624763 ~ 43668196 (-)

Expression


Co-expression Network