LOC110496277 (LOC106588347)


Basic Information

Item Value
gene id LOC110496277
gene name LOC106588347
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41663436 ~ 41671516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572078.2
GGGAGTGGTTGTCCCTGGTGCTGAAAAAACTGGCATGTGCGGGAGGATTTTACAGCATCGCCACATAGCAAGAGCGTGCCATTGTTATTATACCTCAGTGGAGCCGATCCTGCGACAAACAGAGGACCGTGTCAGCCAAGAACTATTTCTCAAGACATAAAAATGCTGGTGAAATCAAACAGCGAGTATGACTCCTTCCTCTACTGGAGACAGCCCATCTCCGCCCCGGACCTGTCCGAGCTGGAAGACCTGGGTGTGACCAAAAGCAAGCCAACCAAGAAGAGCAAGAAGGCCACCAAGAAACAGAATGCCGCCCTAGCCAAGCAAAGGAAGCAGCAAGAGGCCGAATTGTTAGAGTACACCACCTTCAACTACTGGAGAGAGCCTATCCCCAGCATCGACCTCCTCGACTTCAACCTGCTTCTGTGAGGACCATCCCATCTCAGCCTCCCAGTCATAAGAACCTCCCTCTCCTCACACTCACCTTATCTGAATAACCATGGCTTTTGTCAAGTTTCTGGTCCACCCAAAAAGAAGTACTGAATCTGTATTAGTCTGtactgtgttttttttgtgtataaCCTCTTAATAATACTGACAGGATTAGGGGTAGATGTTTTAACTTGCAGGTGACTGGCACTGTGAATGACAGTATAGCCACTTCTGCTTAGGTTTACTCCATACACGGGCTACATGACTCGTTTGGCTAATGTCAACGAACATAACTAGGTAGAAATGGCAACAAGGTCAGcctttaaataaatataaatagttCCATTGCATACTGACTGCAAGGCTTCTGTCTCACATTAAGGACTTACACATTCATAATTTGTGAGGTAACTTGAGTATGCTACATCATATTTTTGAACACTAACAAATGCAAAGTGCTGCCTCATTTGAACTTAGTGAAAATTCTTTCCCTTGACCTAATACAACCTCGAAGGGTAGTGCCAACCTGAGCCTTGGGAGTGTTTGCGTGTAGTATGTATAAGTAAGAGAATGTaaagcaaagcacctccacacagAACAGATATTGTACAAGCACTTAGGGAGCCACAAACATGACTGTCTTTTGCGCTTTGTATTGGTTGCCTTGTGATTTGTTTCAGACActgaactgactgactgaatttTATTTATTAAGTATGCTGCTTTCAGGCTGCCCTGAGTAGGCCTCAACTGAGTGCAATGGCTGAGGGTAAATGTTAGATTCCACAATGCAAGTTGTGCAAATGCAGAGCTGGCCAactgttttctttattttctgcATAGACTACTGCACTGTCCGATGTTTAGTTTGAATGTCAAGGAAAGAATGGAAATGTTTAATGAAAATAGGGAAAATACGTGTTTTTAATTGTCAAGACTGATGTTGCAAAGTGTTCCTGAAAGTACGGAAGCTCTAACTGGACACTTGTAATCATAAAGCTAACTTTTTGTGAGATTGTACAAGGAGCAGTAAATTCCCAAATGTGACTCATCATACTTTGTCTTGACTTTTCTGAAATAAAGGAAGATATCCTGTGCATTCAA
>TU1773336
GAGTGGTTGTCCCTGGTGCTGAAAAAACTGGCATGTGCGGGAGGATTTTACAGCATCGCCACATAGCAAGAGCGTGCCATTGTTATTATACCTCAGTGGAGCCGATCCTGCGACAAACAGAGGACCGTGTCAGCCAAGAACTATTTCTCAAGACATAAAAATGCTGGTGAAATCAAACAGCGAGTATGACTCCTTCCTCTACTGGAGACAGCCCATCTCCGCCCCGGACCTGTCCGAGCTGGAAGACCTGGGTGTGACCAAAAGCAAGCCAACCAAGAAGAGCAAGAAGGCCACCAAGAAACAGAATGCCGCCCTAGCCAAGCAAAGGAAGCAGCAAGAGGCCGAATTGTTAGAGTACACCACCTTCAACTACTGGAGAGAGCCTATCCCCAGCATCGACCTCCTCGACTTCAACCTGCTTCTGTGAGGACCATCCCATCTCAGCCTCCCAGTCATAAGAACCTCCCTCTCCTCACACTCACCTTATCTGAATAACCATGGCTTTTGTCAAGTTTCTGGTCCACCCAAAAAGAAGTACTGAATCTGTATTAGTCTGtactgtgttttttttgtgtataaCCTCTTAATAATACTGACAGGATTAGGGGTAGATGTTTTAACTTGCAGGTGACTGGCACTGTGAATGACAGTATAGCCACTTCTGCTTAGGTTTACTCCATACACGGGCTACATGACTCGTTTGGCTAATGTCAACGAACATAACTAGGTAGAAATGGCAACAAGGTCAGcctttaaataaatataaatagttCCATTGCATACTGACTGCAAGGCTTCTGTCTCACATTAAGGACTTACACATTCATAATTTGTGAGGTAACTTGAGTATGCTACATCATATTTTTGAACACTAACAAATGCAAAGTGCTGCCTCATTTGAACTTAGTGAAAATTCTTTCCCTTGACCTAATACAACCTCGAAGGGTAGTGCCAACCTGAGCCTTGGGAGTGTTTGCGTGTAGTATGTATAAGTAAGAGAATGTaaagcaaagcacctccacacagAACAGATATTGTACAAGCACTTAGGGAGCCACAAACATGACTGTCTTTTGCGCTTTGTATTGGTTGCCTTGTGATTTGTTTCAGACActgaactgactgactgaatttTATTTATTAAGTATGCTGCTTTCAGGCTGCCCTGAGTAGGCCTCAACTGAGTGCAATGGCTGAGGGTAAATGTTAGATTCCACAATGCAAGTTGTGCAAATGCAGAGCTGGCCAactgttttctttattttctgcATAGACTACTGCACTGTCCGATGTTTAGTTTGAATGTCAAGGAAAGAATGGAAATGTTTAATGAAAATAGGGAAAATACGTGTTTTTAATTGTCAAGACTGATGTTGCAAAGTGTTCCTGAAAGTACGGAAGCTCTAACTGGACACTTGTAATCATAAAGCTAACTTTTTGTGAGATTGTACAAGGAGCAGTAAATTCCCAAATGTGACTCATCATACTTTGTCTTGACTTTTCTGAAATAAAGGAAGATATCCTgtgaaataaaaaaaa
>TU1773335
GAGTGGTTGTCCCTGGTGCTGAAAAAACTGGCATGTGCGGGAGGATTTTACAGCATCGCCACATAGCAAGAGCGTGCCATTGTTATTATACCTCAGTGGAGCCGATCCTGCGACAAACAGAGGACCGTGTCAGCCAAGAACTATTTCTCAAGACATAAAAATGCTGGTGAAATCAAACAGCGAGTATGACTCCTTCCTCTACTGGAGACAGCCCATCTCCGCCCCGGACCTGTCCGAGCTGGAAGACCTGGGTGTGACCAAAAGCAAGCCAACCAAGAAGAGCAAGAAGGCCACCAAGAAACAGAATGCCGCCCTAGCCAAGCAAAGGAAGCAGCAAGAGGCCGAATTGTTAGAGTACACCACCTTCAACTACTGGAGAGAGCCTATCCCCAGCATCGACCTCCTCGACTTCAACCTGCTTCTGTGAGGACCATCCCATCTCAGCCTCCCAGTCATAAGAACCTCCCTCTCCTCACACTCACCTTATCTGAATAACCATGGCTTTTGTCAAGTTTCTGGTCCACCCAAAAAGAAGTACTGAATCTGTATTAGTCTGtactgtgttttttttgtgtataaCCTCTTAATAATACTGACAGGATTAGGGGTAGATGTTTTAACTTGCAGGTGACTGGCACTGTGAATGACAGTATAGCCACTTCTGCTTAGGTTTACTCCATACACGGGCTACATGACTCGTTTGGCTAATGTCAACGAACATAACTAGGTAGAAATGGCAACAAGGTCAGcctttaaataaatataaatagttCCATTGCATACTGACTGCAAGGCTTCTGTCTCACATTAAGGACTTACACATTCATAATTTGTGAGGTAACTTGAGTATGCTACATCATATTTTTGAACACTAACAAATGCAAAGTGCTGCCTCATTTGAACTTAGTGAAAATTCTTTCCCTTGACCTAATACAACCTCGAAGGGTAGTGCCAACCTGAGCCTTGGGAGTGTTTGCGTGTAGTATGTATAAGTAAGAGAATGTaaagcaaagcacctccacacagAACAGATATTGTACAAGCACTTAGGGAGCCACAAACATGACTGTCTTTTGCGCTTTGTATTGGTTGCCTTGTGATTTGTTTCAGACActgaactgactgactgaatttTATTTATTAAGTATGCTGCTTTCAGGCTGCCCTGAGTAGGCCTCAACTGAGTGCAATGGCTGAGGGTAAATGTTAGATTCCACAATGCAAGTTGTGCAAATGCAGAGCTGGCCAactgttttctttattttctgcATAGACTACTGCACTGTCCGATGTTTAGTTTGAATGTCAAGGAAAGAATGGAAATGTTTAATGAAAATAGGGAAAATACGTGTTTTTAATTGTCAAGACTGATGTTGCAAAGTGTTCCTGAAAGTACGGAAGCTCTAACTGGACACTTGTAATCATAAAGCTAACTTTTTGTGAGATTGTACAAGGAGCAGTAAATTCCCAAATGTGACTCATCATACTTTGTCTTGACTTTTCTGAAATAAAGGAAGATATCCTGTGCATTCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572078.2 False 1536 mRNA 0.43 2 41668260 41671516
TU1773336 False 1539 TUCP 0.42 3 41663436 41671514
TU1773335 True 1534 TUCP 0.43 2 41668260 41671514

Neighbor

gene id symbol gene type direction distance location
LOC110496275 LOC106588348 coding downstream 5384 41650577 ~ 41662876 (-)
LOC110496274 NA coding downstream 22647 41618290 ~ 41645613 (-)
LOC110496931 LOC106588283 coding downstream 134798 41532331 ~ 41533462 (-)
LOC110496269 LOC106588349 coding downstream 136934 41530743 ~ 41531326 (-)
LOC110496267 LOC106588355 coding downstream 340720 41225685 ~ 41327540 (-)
LOC110496279 LOC106588343 coding upstream 33009 41704525 ~ 41721962 (-)
LOC110496281 LOC106588342 coding upstream 51798 41723314 ~ 41752064 (-)
LOC110496283 LOC106588340 coding upstream 108045 41779561 ~ 41812159 (-)
LOC110496284 LOC106588339 coding upstream 157639 41829155 ~ 41841256 (-)
LOC110496288 LOC106588334 coding upstream 274746 41946262 ~ 41962098 (-)
G1549861 NA non-coding downstream 18541 41649488 ~ 41649719 (-)
G1549241 NA non-coding downstream 165967 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 182882 41485019 ~ 41485378 (-)
G1549194 NA non-coding downstream 194706 41473318 ~ 41473554 (-)
G1549888 psb4 non-coding upstream 170196 41841712 ~ 41843057 (-)
G1549939 LOC106588337 non-coding upstream 200611 41872127 ~ 41873029 (-)
G1549941 LOC106588337 non-coding upstream 202541 41874057 ~ 41875450 (-)
G1549942 NA non-coding upstream 229659 41901175 ~ 41923079 (-)
G1549970 NA non-coding upstream 255213 41926729 ~ 41927158 (-)
LOC118941164 LOC106588367 other downstream 759635 40902519 ~ 40908744 (-)
G1548517 NA other downstream 982619 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1276377 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 1979579 39642841 ~ 39688750 (-)
LOC110496208 LOC106588417 other downstream 2037162 39625771 ~ 39641803 (-)
G1550177 LOC106569881 other upstream 643770 42315286 ~ 42316079 (-)
G1550202 NA other upstream 687632 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1223515 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1959490 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 3149247 44820763 ~ 44828808 (-)

Expression


Co-expression Network