LOC110496283 (LOC106588340)


Basic Information

Item Value
gene id LOC110496283
gene name LOC106588340
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41779561 ~ 41812159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572087.2
GGCATCAGATTCACTGTGATAATGCTGGCGTCATCGGTCCTTTTAAATATTTTGAGGCGGATCCGTTGGCTAGAGGTTTCGGATTTGCGCAGCATCAGAATGAGATTTGAGCTGGGGTGCTAGAGTCTTTCCAAATGGAATTAGAAATCCAATGGATAGATTGAGACCCTAAAATCAAAAAATATTGTCAAGAGGgtTCAACTGCCACCATGGCTGAAATGGAAGTGGCTATCTCTCCTGCCCAGATCGAGACACTTCATCTCAGCCCCTCGCTGTCCTCCACCTCTACATTTTCCTGCCCTTCCTCACCTggatcctcttcttcctcatcctcctgctCGGACTGCTCCTCGGACTGCCCCAACCAGCACCAGTCCTCTTCCAGTCCCAGAAGCTCCAGTCCCAGAAGCTCCAGTCCCAGAAGCTCCAGCCCCAGTGGCTGCAGCAGCGGCAGCGATGGCATGCGGGGCTGCAGCCCTCCTTTGGACATCATATCTGAGGACGCTATGGAGCTGGACCTGGTCATCGACCCTGAAGTGGCCCTGAAGGCTTGCCAGGAGGTCCTGCAGAATGTCAAACTTCTGAAGGTTGAGGAAGAACCAGAGTTGTTGGAAAAGTGCAGCCCGCAAAGGCGACTGCCCAATGGAACAGTATACTTGGAGCCTTTCGACACGGGTTCGATTAAAGAGGAGGAAGAACAGCATGATCCTCTACAACAAATAACGCTACCATGTCCTCTGTCACAACAGCCTTGTGACACAGGTTCCATTAAAGAGGAGGAAGAAAGTGATGCTCTTCGACATATTCCTTGTGACACCGGTTCGAttaaagaggaggatgaagaggaggaagaaaagcGTGATCCTCCCCGACAAATTACTCCCACATGCCCTCAGTCGCAACAACAGAATGGCGACCAGTCCTCTGCAGCAGCCAAGCAGTCCTTGCTTTTACGGTTATTTGAGTCTAAGCTCTTCGACGTCTCCATGGCCATCTCCTACCTGTACAAGTCCAAAGAGCCTGGCGTCCAGGCCTACATTGGCAACCGCCTCTTCAGCTTCTCTGACGACGACGTGGACTTCCACCTACCCCAGCTGCTCAACATGTACGTCCACATGGACGAGGATATGGGCGACGCCATCCGGCCCTACGTGGTGCACCGCTGCCGCCAGAGCATTGCCTTCTCCCTGCAGACGGCATGGCTGCTCGGCGCCTACTCCTCCGACATGCACATCTCTACCCAGCGCCACTCGCGCGGCACCAAGCTGCGCAAGCTAATCCTCTCCGACGAACTAAAGCCCCACTCGGCTTCTAAAGGTGTAGATCCAGCTGGTGCTGCAGCCGCCAGCCCTGGGCTGCGGGACGGTGCTCGGATTCACCAGCGGCACGCCGTGGAGCTGTCCCCGGCTCCCGACAGCCAAATCATCCCTGCCGATGCCTACCTCTCGCCTTCCAAGCGGACACACCAGCGGTCCAAGTCGGACGCCACGCATTGCACGAGCCTGGCGACTAGCCTCAAGAGAACAGCCAGCAACCCCAAGGTGGAAAGGGGCTACGATGAGcCGCTGCGCCTGACGCCACAGAGGGAGTTCATCAAGTCTCTGATGGGCATCGGCAAGCGGCTGGCCACGCTGCCCACCAAGGAGCAGAAGACCAAGCAGCTCACCTCAGAGCTGTTAGTGCTCAACCACAAGCTGCCCGCCCGCGTCTGGCTGCCCACTGCAGCCTTCGACCATCACGTGGTGCGCGTGCCCCACACACAGGCCGTGGTGCTCAACTCCAAAGACAAGgccccGTACATCATCTATGTGGAGGTGCTGGAGTGCGGGAGTTTCGAGACGTCTGCCATTCCCGTGCGCATTCATGAGACCCGCATCCGCAGTGCCCGCTCTGCGGACAACCTCCTCCCAGAGTGCGTTGGCATCACAGCCGAGCAGCGCGCCGGCAGCTTCTCCACCGTGCCCAACTACGACAACGACGACGAGGCCTGGGCCGTGGACGACATCGGCGAGCTGCAAGTGGAGCTCCCAGAAGGCCACACCAGTAGCAGCGACAACATCTCCCAGTTCTCTGTGGACAGCATCACTAGCACGGAGAGCAAGGAGCCCATCTTCATCGCCGCCGGCGACATCAGGCGACGTCTGTCAGAGAACCTGGCCCACACCCCCACCACGTTCCGGAAAGATCCGGAGGACCCGTCCGCTGTGGCGCTCAAGGAGCCCTGGCAGGAGAAAGTCAGgcGGATAAGGGAGGGCTCTCCTTACGGTCACCTGCCAAACTGGCGGCTGCTGTCGGTCATCGTGAAGTGTGGGGACGACCTGAGGCAGGAGCTACTGGCCTTCCAGGTGCTCAGCCAGCTGCAGTCCATCTGGGAGCAGGAGCGCGTCCCCCTGTGGATCAAGCCCTATAAAATCCTGGTGATGTCATCGGACAGCGGGATGATTGAGCCCGTGCTGAACGCTGTCTCTCTGCACCAGGTGAGGAAGCAGAGCCAGCTGTCTCTGCTGGACTACTTCCTGCAGGAGCACGGCAGCTACACCACCGAGGCCTTCCTCACCGCCCAGCGCAACTTTGTGGAGAGCTGCGCCGGGTACAGCCTCATCTGCTACCTGCTGCAGGTCAAAGACAGACACAATGGCAACATCCTCCTGGACTCTGAGGGCCACATCATCCACATTGACTTTGGTTTCATCCTGTCCAGCTCACCCAGAAACCTGGGCTTTGAGACCTCTGCTTTTAAGCTCACCAGCGAATTTGTGGATGTGATGGGAGGCCTGGATGGAGACATGTTCAACTACTACAAGGTGCTGATGCTCCAGGGCCTGATAGCTGCTCGCAAACACATGGAGAAGGTGGTCCAAATAGTGGAGATCATGCAGCAAGgCTCTCACCTGCCCTGCTTCCATGGCTCCAGCACCATCCGCTACCTGAAGGAACGTTTCCACATGAGCCTGACGGAGGAGCAGCTACAGGTGCTGGTGGAGCAGATGGTGGATGGCTCCATGCGTTCCATCACCACCAAGCTTTACGACGGCTTCCAGTACTTCACCAACGGTATCATGTGAACAGTTCAACACCGGGACACAACCACATGGGAGAGCAAGCAatcgtgtacacacacacacacagatggtggTGAACATGTGCATATGGACTCAAACATGTGCTTGCCATAGCAGCACATCTACAAAAATGGACTCTTGTATAGACTAGTACTACAGGACTTGTATAGACTAGTACTACAGGACTTGTATAGACTAGTACTACAGGACTTGTTTGCAAACTTGATATGTTCTTTGTCTTAGACAGACTtctgcccccctcctcccccctccttgtTTTGGCCTTGTGGAGGGGGAGACTGcacctcctccctcctgtccatAGGACTTTTACCTCATTGACGGCTTAAAAAGAGGCATAACGCACAGTTCAAATCACACACGAAAACGATTAAGTATCAATATTGGAGGAGGTACTGTGGGAGAGGGCGTGGTCTAAATTCAGAGGAGCCAAGAAGCGTTTTCTCAGATTGGACAACTGCAAGAGCAAATCAGAGGTACATATCGAATATGTACTTATTTTCCCATTGTTCTTAGAGCAAAATGGACTTTGAGAAGCCACTATGTAACGACAAAGAAAGCACAAGACAGGTTTTCTAATGGACATTTTCCCTTCTTCTCTGAAAATTCTGTGGTCATCAAGAATGAGCCAGCccaaagagaggggggaaggactATTTAAAAACCATGGGTGTATGAGTGTTATCTGTCAGGAAAACAACTTTATTCCAAGAGTTTGATTTGTTTTGAACTGGAAGTTTGAACTAGGACCAACACGTCTCTTCTTAGGGGTCCAAGCATGCAGCAAAGCTGCTGGTTGTGTTTTTCTTCCCATCCTTAAAAGGAGCAGTTTCATTTCAATCTGGGTTTAAGACAACTGGTTCTCATCCAGTAAAGCACATCTGTACTTACTGTTACAGATAGAAATACCATGAATAAAAAGGACTGTTCTCTATCGTCACATGACAGTCTGTATATTCAACAGACTGTGTCATGCCAACATACATCATGTAGGGCTTTGCTTTGCTAGTGTCACTCTTAAAGCCACCATACTTGAAGGAACGCTAGCGTCATGCTGAGCCTCATGCACTTGACGTTGAACCAAAATGGCTACCTGTGGTtacatatatataaaacaattgCAATGGATTTATGCAAAAAAAACTCAACATTGATGTTCCACTGTTTGTCTTTCATCTCTAACTAAATGTGTATGTTAACGCATTATTATTGTATGTTATGTTAACTAAGGTTGCATATTTAACGAATGCTCAACACGTCCCTCTCTTGTTGGCTCTCGGATGCATTCCTGTGACTAACTCGGGCCAATCCAGAGAGAGGGTTGTCCTTGAGCAGACGATGTAAATAATGGGAgtgatgatttcattcctctgTCTGTTTTTATTTCTCCTTATTTTGAACAGTATGAGCTCATTATTTCCTTTATgtgatttttttaattttttttatatgaTACTCTACTAAACCGATTTTAGTTTTTTGCTCTCTCAAACACAAACATGTATTCAGTATTGAAGagagctgtttgaaaaagctaCATGCTGGGATAGCCTATAACTTATATTACCTGCTTATGTTTCAAAGCTGTATTGTCGGTGGGTGGCTTTTGTGTATAGCAAAAATGACAGAGAACTCAAATGAGTCATTCCTGTGAGCAAACCAATGCCTTGACACATACAACTTTTATCAATGCAACAGTTGGGACAAAGGCGTGCAGGTCATGTACCCAGGAAGTTTATTTGATAAGTTTTAAACACTTCAGTAAACTACTACTTTCATTGCCTTTCCCTTTCATTTATTCCAACCCTAACATTCTGTAAAATGATGTAAATAACTCAAGTGCATTTTTATCTTTACCGGAGTGGGTTCTGTCAAACCCCCGTTGATGTTCTCTCCCATTCTGAACCATGGGCACAATTCTGCTTCTCCTTGTCCAGTGTCACACCAGCTAAATGCTTGTCCAGACTGCTCCAGATAATGTATAGATCACACTATTGTTCTGAACAGAAAGACGTGGTTTTAGACGGAACTGGTCCACCGCTAACACCAAGCAAAGCATTTATTCGACTAAATTAACAAGTCCTTGATACTAAAGACATTTTAGAATGTACAGGGGAAGAAATATTGCCCACTTTTGTATCAGAACGCTAACACTTTAATCTTCCTAATTCTATGTTTCGCTTTTCATACACATGGTACAGAGATGAACCTTGTATCATGTTGCCTAAATGCATGACTCCTTCAATAAATTGGAAAGTTGTTTTCTTGTATATTTTCTTAACATGTGTTGATAAATTGTAGGGGGAATTTTGGATATA

Function

NR:

description
phosphatidylinositol 4-kinase beta-like

GO: NA

KEGG:

id description
K19801 PI4KB; phosphatidylinositol 4-kinase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572087.2 True 5401 mRNA 0.50 12 41779561 41812159

Neighbor

gene id symbol gene type direction distance location
LOC110496281 LOC106588342 coding downstream 27497 41723314 ~ 41752064 (-)
LOC110496279 LOC106588343 coding downstream 57599 41704525 ~ 41721962 (-)
LOC110496277 LOC106588347 coding downstream 108045 41663436 ~ 41671516 (-)
LOC110496275 LOC106588348 coding downstream 116685 41650577 ~ 41662876 (-)
LOC110496274 NA coding downstream 133948 41618290 ~ 41645613 (-)
LOC110496284 LOC106588339 coding upstream 16996 41829155 ~ 41841256 (-)
LOC110496288 LOC106588334 coding upstream 134103 41946262 ~ 41962098 (-)
LOC110496289 jtb coding upstream 197690 42009849 ~ 42014114 (-)
LOC110496292 LOC106588330 coding upstream 216131 42028290 ~ 42035215 (-)
LOC110496293 tcpg coding upstream 225115 42037274 ~ 42046633 (-)
G1549861 NA non-coding downstream 129842 41649488 ~ 41649719 (-)
G1549241 NA non-coding downstream 277268 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 294183 41485019 ~ 41485378 (-)
G1549194 NA non-coding downstream 306007 41473318 ~ 41473554 (-)
G1549888 psb4 non-coding upstream 29553 41841712 ~ 41843057 (-)
G1549939 LOC106588337 non-coding upstream 59968 41872127 ~ 41873029 (-)
G1549941 LOC106588337 non-coding upstream 61898 41874057 ~ 41875450 (-)
G1549942 NA non-coding upstream 89016 41901175 ~ 41923079 (-)
G1549970 NA non-coding upstream 114570 41926729 ~ 41927158 (-)
LOC118941164 LOC106588367 other downstream 870936 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1093920 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1387678 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2090880 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 503127 42315286 ~ 42316079 (-)
G1550202 NA other upstream 546989 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1082872 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1818847 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 3008604 44820763 ~ 44828808 (-)

Expression


Co-expression Network