LOC110496284 (LOC106588339)


Basic Information

Item Value
gene id LOC110496284
gene name LOC106588339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41829155 ~ 41841256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572089.2
ATCCACCAATTGGAATTTACGTTTGCTTTGTAGTCAGGCAGACATGACATATTTGTCCAATCACAAAACAAATCTGAAAGGGGATTTTTGCTGTATCTTTGGCTCAGAGGCCTCAGGGTGTGTTTGCCACCACTGTGTGAGCAAACAATGACGGAGGACAGGCTGAAGGCGGACCCCTCCAAGCGGGAGGGGCTGGACTCAGTAGAGGGAGACACAGAGCCCAGCCTGCTGCTGCAGAAACTAAAGAGCAACATCTCTAAGAATGTACAGGGCAAAGTGGACGTTATCCTGCAAGATGTGCAGCGCTTCTCTGACAACGACAAACTCTACCTTTACCTCCAGCTGCCTTCTGGCCCCAGTTCAGGGGAGAAAAGTCTGGCAATGGCCCCGCTGGCACAACTTAGGCGGTGGTGTATTTCTGCATCGATGTCAGCTTTGGAGGAGAGAACACTGCCAAGcagcagcagtgaccCCAGCTCCTTCAACACAGCTGACCAGCTGCACACCTGCAACTGGATCCGCAGCCACCTGGAGGAGCACGCAGACACCTGCCTGCCCAAGCAAGACGTCTACGAGACATACAAGAGATACTGTGAAAACCTGCAACACAGGCCTCTGAGTGCTGCCAACTTTGGGAAGATCATCCGTGACATCTTCCCCAACATCAAAGCCCGGAGGCTTGGTGGCAGGGGACAGTCCAAGTATTGTTATAGTGGAATCCGCAGGAAGACGGTGCTAAACATGCCACTGTTGCCAAACCTGGACCTGAAAAACGACCCGTCGGAGCTGACGGAGCTGGTGCAGACCTACAAGCAAGAGGTGACGGAGGCGGCTTGTGAGCTCATCTGTGATTGGGCCCAGAAGATCCTCAAGCGTTCCTTTGACACAGTAGTCGAGATCGCCCGTTTTCTTGTGCAGGAGCACATCGTCAACCCGCGCTGCAGCCAGGCTGAACTTGTCACTTCTGCCGCTATGGCAGGAGGTCCTGCAAAGCCCCACAAGGTGATCAAGAAGAACCCAGTACCATCCAAAGGAGGTGGACCAGAGACGGAAGGGAGCGCCTCTGAAGCTAAGAGGGATAAAGACGTTGGGGATCAGTCGTTGCCAGGGAAACTGCAGTCCAGTGACAAGCCTATGAAAGGGGCGGAGTCGGTACGCCCGGGGGGTCGCGAATTGCAGGTGGAGGCTCTGATGAAACACTTGCCCCGAATCCTGCCTCGCAGCTCTGTCCCGGAAAAGTCCCAGCTTTCGGTGCGCTCCTCGCCTCCCTCGCTGGCGCCCAAAGACGCAGGCGGCATGAAAGTCATCACAATGACTGCCCTGCCCCAGCAGCAAGGGGGCGCTCTCCCCGTCATGATCCTCCCCCAGAGCGTCAGCCTCTCCTACCCCGACAGGGAAAAAGCCCCGTCAATCACCATGGCGCCCGTGGCACCAACGTCGGTGGTGCAGAGGGCTCGCGCAGTGGGCAAACGGGCCCCCGAGGCAGCAAGTGGGGGCCCCGGGCCAGGAGGCACGCCGGCCAAACGGAAACGAGGACGACCCAGGAAGCCACGGCCAGAGGACATCACCCCCCCGCAGCCGCCCCCTCCACCCTTACCCTCGGTCAACCAAGCCCCTATTATGAATTCCCTCACCGGAGGGGTGATCCAGAAAgcctgctcttcctcctcctcccaggtgGTGGAGGTCGTATTCCAGGACCAGCAGGCCTTGGTACTAGGTCAGCTGCATTCGGTAGCGGACACAGGTGACCCAGAGCACCGGGGCGTGGTGCTCGAGACTGACCCACGGCCCGTGCTGCTGCTGTCAGGGGCCAGTCACACAAACTGGGACATGGGCAGGGCCATGGTAGAGGTCATCCAGAGGGCCCCGAGACCACCCACCATCATCACcaagaacaacaacaactccCAGTCTACCCCCCAGCACCGCCTGCCCCTGCCCACTGTGCTGGAGGATCGAGGGGAGGTGGAGATCACCCTCACCCCCGTGGAGCCTTCGGACGATCTGCCGACCCCCACTGGCCAGGCTAGCTCGACCCCCACTGCCCAGGCTAGCTCGGAAGGTGGCCCCACACCCGATGACAGCTCTAAAGAACCTAGCCCTGGCCTTCCTTGTCCCAGAGACTAAGGAGCACTAAGGGACTTTAAACTACCCTCAGGGGGAGGATAACCACCCCCAATCATCTTCTCCCAGGTAGCGTCTTCTCCCCGATTGGTGGAAATCCAAGATTGGCAGCGCAGAGAGCCAAGAAGGATCGATGAAGCCTAAACACTATTAATCCCTGTTGACCTTCCGTTTATAACTCTTTGCTGTGACTCTAACTGCATGTTTGTCTTTGTAATTGTGAGCAGAGAGAGCGATAAAGGCGGTTCCATAGTTCTGATGACGAGGGGGGGGGTATTTACGGGTTCGGACCTTTTAAGGTTTTAAGTGCTACTCTCCCTGAGAGGAACTCCCCtcagtgtttattttattttaatgatatacagttgaaattggaagtttacaaacaccttagccaaatacatttaaactcagtttttcatcatTCCTggcatgtaatcctagtaaaacttccCAGTCTtt
>XM_036952853.1
ATCCACCAATTGGAATTTACGTTTGCTTTGTAGTCAGGCAGACATGACATATTTGTCCAATCACAAAACAAATCTGAAAGGGGATTTTTGCTGTATCTTTGGCTCAGAGGCCTCAGGGTGTGTTTGCCACCACTGTGTGAGCAAACAATGACGGAGGACAGGCTGAAGGCGGACCCCTCCAAGCGGGAGGGGCTGGACTCAGTAGAGGGAGACACAGAGCCCAGCCTGCTGCTGCAGAAACTAAAGAGCAACATCTCTAAGAATGTACAGGGCAAAGTGGACGTTATCCTGCAAGATGTGCAGCGCTTCTCTGACAACGACAAACTCTACCTTTACCTCCAGCTGCCTTCTGGCCCCAGTTCAGGGGAGAAAAGTCTGGCAATGGCCCCGCTGGCACAACTTAGGCGGTGGTGTATTTCTGCATCGATGTCAGCTTTGGAGGAGAGAACACTGCCAAGcagcagcagtgaccCCAGCTCCTTCAACACAGCTGACCAGCTGCACACCTGCAACTGGATCCGCAGCCACCTGGAGGAGCACGCAGACACCTGCCTGCCCAAGCAAGACGTCTACGAGACATACAAGAGATACTGTGAAAACCTGCAACACAGGCCTCTGAGTGCTGCCAACTTTGGGAAGATCATCCGTGACATCTTCCCCAACATCAAAGCCCGGAGGCTTGGTGGCAGGGGACAGTCCAAGTATTGTTATAGTGGAATCCGCAGGAAGACGGTGCTAAACATGCCACTGTTGCCAAACCTGGACCTGAAAAACGACCCGTCGGAGCTGACGGAGCTGGTGCAGACCTACAAGCAAGAGGTGACGGAGGCGGCTTGTGAGCTCATCTGTGATTGGGCCCAGAAGATCCTCAAGCGTTCCTTTGACACAGTAGTCGAGATCGCCCGTTTTCTTGTGCAGGAGCACATCGTCAACCCGCGCTGCAGCCAGGCTGAACTTGTCACTTCTGCCGCTATGGCAGGAGGTCCTGCAAAGCCCCACAAGGTGATCAAGAAGAACCCAGTACCATCCAAAGGAGGTGGACCAGAGACGGAAGGGAGCGCCTCTGAAGCTAAGGTAAGGGATAAAGACGTTGGGGATCAGTCGTTGCCAGGGAAACTGCAGTCCAGTGACAAGCCTATGAAAGGGGCGGAGTCGGTACGCCCGGGGGGTCGCGAATTGCAGGTGGAGGCTCTGATGAAACACTTGCCCCGAATCCTGCCTCGCAGCTCTGTCCCGGAAAAGTCCCAGCTTTCGGTGCGCTCCTCGCCTCCCTCGCTGGCGCCCAAAGACGCAGGCGGCATGAAAGTCATCACAATGACTGCCCTGCCCCAGCAGCAAGGGGGCGCTCTCCCCGTCATGATCCTCCCCCAGAGCGTCAGCCTCTCCTACCCCGACAGGGAAAAAGCCCCGTCAATCACCATGGCGCCCGTGGCACCAACGTCGGTGGTGCAGAGGGCTCGCGCAGTGGGCAAACGGGCCCCCGAGGCAGCAAGTGGGGGCCCCGGGCCAGGAGGCACGCCGGCCAAACGGAAACGAGGACGACCCAGGAAGCCACGGCCAGAGGACATCACCCCCCCGCAGCCGCCCCCTCCACCCTTACCCTCGGTCAACCAAGCCCCTATTATGAATTCCCTCACCGGAGGGGTGATCCAGAAAgcctgctcttcctcctcctcccaggtgGTGGAGGTCGTATTCCAGGACCAGCAGGCCTTGGTACTAGGTCAGCTGCATTCGGTAGCGGACACAGGTGACCCAGAGCACCGGGGCGTGGTGCTCGAGACTGACCCACGGCCCGTGCTGCTGCTGTCAGGGGCCAGTCACACAAACTGGGACATGGGCAGGGCCATGGTAGAGGTCATCCAGAGGGCCCCGAGACCACCCACCATCATCACcaagaacaacaacaactccCAGTCTACCCCCCAGCACCGCCTGCCCCTGCCCACTGTGCTGGAGGATCGAGGGGAGGTGGAGATCACCCTCACCCCCGTGGAGCCTTCGGACGATCTGCCGACCCCCACTGGCCAGGCTAGCTCGACCCCCACTGCCCAGGCTAGCTCGGAAGGTGGCCCCACACCCGATGACAGCTCTAAAGAACCTAGCCCTGGCCTTCCTTGTCCCAGAGACTAAGGAGCACTAAGGGACTTTAAACTACCCTCAGGGGGAGGATAACCACCCCCAATCATCTTCTCCCAGGTAGCGTCTTCTCCCCGATTGGTGGAAATCCAAGATTGGCAGCGCAGAGAGCCAAGAAGGATCGATGAAGCCTAAACACTATTAATCCCTGTTGACCTTCCGTTTATAACTCTTTGCTGTGACTCTAACTGCATGTTTGTCTTTGTAATTGTGAGCAGAGAGAGCGATAAAGGCGGTTCCATAGTTCTGATGACGAGGGGGGGGGTATTTACGGGTTCGGACCTTTTAAGGTTTTAAGTGCTACTCTCCCTGAGAGGAACTCCCCtcagtgtttattttattttaatgatatacagttgaaattggaagtttacaaacaccttagccaaatacatttaaactcagtttttcatcatTCCTggcatgtaatcctagtaaaacttccCAGTCTtt
>XM_036952854.1
ATCCACCAATTGGAATTTACGTTTGCTTTGTAGTCAGGCAGACATGACATATTTGTCCAATCACAAAACAAATCTGAAAGGGGATTTTTGCTGTATCTTTGGCTCAGAGGCCTCAGGGTGTGTTTGCCACCACTGTGTGAGCAAACAATGACGGAGGACAGGCTGAAGGCGGACCCCTCCAAGCGGGAGGGGCTGGACTCAGTAGAGGGAGACACAGAGCCCAGCCTGCTGCTGCAGAAACTAAAGAGCAACATCTCTAAGAATGTACAGGGCAAAGTGGACGTTATCCTGCAAGATGTGCAGCGCTTCTCTGACAACGACAAACTCTACCTTTACCTCCAGCTGCCTTCTGGCCCCAGTTCAGGGGAGAAAAGcagcagcagtgaccCCAGCTCCTTCAACACAGCTGACCAGCTGCACACCTGCAACTGGATCCGCAGCCACCTGGAGGAGCACGCAGACACCTGCCTGCCCAAGCAAGACGTCTACGAGACATACAAGAGATACTGTGAAAACCTGCAACACAGGCCTCTGAGTGCTGCCAACTTTGGGAAGATCATCCGTGACATCTTCCCCAACATCAAAGCCCGGAGGCTTGGTGGCAGGGGACAGTCCAAGTATTGTTATAGTGGAATCCGCAGGAAGACGGTGCTAAACATGCCACTGTTGCCAAACCTGGACCTGAAAAACGACCCGTCGGAGCTGACGGAGCTGGTGCAGACCTACAAGCAAGAGGTGACGGAGGCGGCTTGTGAGCTCATCTGTGATTGGGCCCAGAAGATCCTCAAGCGTTCCTTTGACACAGTAGTCGAGATCGCCCGTTTTCTTGTGCAGGAGCACATCGTCAACCCGCGCTGCAGCCAGGCTGAACTTGTCACTTCTGCCGCTATGGCAGGAGGTCCTGCAAAGCCCCACAAGGTGATCAAGAAGAACCCAGTACCATCCAAAGGAGGTGGACCAGAGACGGAAGGGAGCGCCTCTGAAGCTAAGGTAAGGGATAAAGACGTTGGGGATCAGTCGTTGCCAGGGAAACTGCAGTCCAGTGACAAGCCTATGAAAGGGGCGGAGTCGGTACGCCCGGGGGGTCGCGAATTGCAGGTGGAGGCTCTGATGAAACACTTGCCCCGAATCCTGCCTCGCAGCTCTGTCCCGGAAAAGTCCCAGCTTTCGGTGCGCTCCTCGCCTCCCTCGCTGGCGCCCAAAGACGCAGGCGGCATGAAAGTCATCACAATGACTGCCCTGCCCCAGCAGCAAGGGGGCGCTCTCCCCGTCATGATCCTCCCCCAGAGCGTCAGCCTCTCCTACCCCGACAGGGAAAAAGCCCCGTCAATCACCATGGCGCCCGTGGCACCAACGTCGGTGGTGCAGAGGGCTCGCGCAGTGGGCAAACGGGCCCCCGAGGCAGCAAGTGGGGGCCCCGGGCCAGGAGGCACGCCGGCCAAACGGAAACGAGGACGACCCAGGAAGCCACGGCCAGAGGACATCACCCCCCCGCAGCCGCCCCCTCCACCCTTACCCTCGGTCAACCAAGCCCCTATTATGAATTCCCTCACCGGAGGGGTGATCCAGAAAgcctgctcttcctcctcctcccaggtgGTGGAGGTCGTATTCCAGGACCAGCAGGCCTTGGTACTAGGTCAGCTGCATTCGGTAGCGGACACAGGTGACCCAGAGCACCGGGGCGTGGTGCTCGAGACTGACCCACGGCCCGTGCTGCTGCTGTCAGGGGCCAGTCACACAAACTGGGACATGGGCAGGGCCATGGTAGAGGTCATCCAGAGGGCCCCGAGACCACCCACCATCATCACcaagaacaacaacaactccCAGTCTACCCCCCAGCACCGCCTGCCCCTGCCCACTGTGCTGGAGGATCGAGGGGAGGTGGAGATCACCCTCACCCCCGTGGAGCCTTCGGACGATCTGCCGACCCCCACTGGCCAGGCTAGCTCGACCCCCACTGCCCAGGCTAGCTCGGAAGGTGGCCCCACACCCGATGACAGCTCTAAAGAACCTAGCCCTGGCCTTCCTTGTCCCAGAGACTAAGGAGCACTAAGGGACTTTAAACTACCCTCAGGGGGAGGATAACCACCCCCAATCATCTTCTCCCAGGTAGCGTCTTCTCCCCGATTGGTGGAAATCCAAGATTGGCAGCGCAGAGAGCCAAGAAGGATCGATGAAGCCTAAACACTATTAATCCCTGTTGACCTTCCGTTTATAACTCTTTGCTGTGACTCTAACTGCATGTTTGTCTTTGTAATTGTGAGCAGAGAGAGCGATAAAGGCGGTTCCATAGTTCTGATGACGAGGGGGGGGGTATTTACGGGTTCGGACCTTTTAAGGTTTTAAGTGCTACTCTCCCTGAGAGGAACTCCCCtcagtgtttattttattttaatgatatacagttgaaattggaagtttacaaacaccttagccaaatacatttaaactcagtttttcatcatTCCTggcatgtaatcctagtaaaacttccCAGTCTtt

Function

NR:

description
DNA-binding protein RFX5-like isoform X3

GO: NA

KEGG:

id description
K08061 RFX5; regulatory factor X 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572089.2 False 2589 mRNA 0.56 11 41829155 41841256
XM_036952853.1 False 2592 mRNA 0.56 11 41829155 41841256
XM_036952854.1 True 2508 mRNA 0.56 10 41829155 41841256

Neighbor

gene id symbol gene type direction distance location
LOC110496283 LOC106588340 coding downstream 16996 41779561 ~ 41812159 (-)
LOC110496281 LOC106588342 coding downstream 77091 41723314 ~ 41752064 (-)
LOC110496279 LOC106588343 coding downstream 107193 41704525 ~ 41721962 (-)
LOC110496277 LOC106588347 coding downstream 157639 41663436 ~ 41671516 (-)
LOC110496275 LOC106588348 coding downstream 166279 41650577 ~ 41662876 (-)
LOC110496288 LOC106588334 coding upstream 105006 41946262 ~ 41962098 (-)
LOC110496289 jtb coding upstream 168593 42009849 ~ 42014114 (-)
LOC110496292 LOC106588330 coding upstream 187034 42028290 ~ 42035215 (-)
LOC110496293 tcpg coding upstream 196018 42037274 ~ 42046633 (-)
LOC110496294 LOC106588328 coding upstream 206845 42048101 ~ 42056179 (-)
G1549861 NA non-coding downstream 179436 41649488 ~ 41649719 (-)
LOC110496274 NA non-coding downstream 184507 41618290 ~ 41645613 (-)
G1549241 NA non-coding downstream 326862 41502018 ~ 41502293 (-)
G1549213 NA non-coding downstream 343777 41485019 ~ 41485378 (-)
G1549194 NA non-coding downstream 355601 41473318 ~ 41473554 (-)
G1549888 psb4 non-coding upstream 456 41841712 ~ 41843057 (-)
G1549939 LOC106588337 non-coding upstream 30871 41872127 ~ 41873029 (-)
G1549941 LOC106588337 non-coding upstream 32801 41874057 ~ 41875450 (-)
G1549942 NA non-coding upstream 59919 41901175 ~ 41923079 (-)
G1549970 NA non-coding upstream 85473 41926729 ~ 41927158 (-)
LOC118941164 LOC106588367 other downstream 920530 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1143514 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1437272 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2140474 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 474030 42315286 ~ 42316079 (-)
G1550202 NA other upstream 517892 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 1053775 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1789750 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2979507 44820763 ~ 44828808 (-)

Expression


Co-expression Network