LOC110496288 (LOC106588334)


Basic Information

Item Value
gene id LOC110496288
gene name LOC106588334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 41946262 ~ 41962098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572100.2
CACTCTAATCTTGGTTTCCGCCAGATGACACagtcacaaagtcaaaattggctacaaAAATTAGGCatttggtcttaatttaatgtTAGGCTTACAGTGAGCAGTGTGGTTAAAATTAGGGTTAAGACGATACATTTTAGAAATGGGCGTGGTTTAtccataattatgactttgtggctgtgctaacTAGTGACGACCCCGACGGTTTAAATTAAGATATTGACGTTCGCATTGACCCATCTAAATCTACTGCGCGCGCAATCACAACCAATCACCTCCGGCGGTTTATGTTGATCGGCATGATCTGTTTGATTGGTGTGTCGATCATCCGATTAAAATTAGGGAAAACAGGACTGGCCTATCAAGAACTCCACAGGGCGGGATTTGATAGAGGGGGCTGGGTGCGAAGTATCATGGAGGATCAGTAAGAGAACTGTGGCCATCCAAGAAAGCTGAGCTGTGGGTCCAAGCACTGGAGTTTCAGAAAATTTGATTGGCATTTTTTTTACGTTAACAtagtgttttatattttattaataaTGGAGATGAAGAAGAGGATCAGTTTAGAATTGAGGAATAGGACACCAGCGGAGGTGGAAGAACTGGTGGTGGATAATTGCCGCACCAGTGATGGTGAAGTAGAGGGCCTGACGGATGATTTCAAGGAGCTGGAATTCCTCAGCATGGTCAACGTTGGACTCACCTCCCTGGCCAAACTACCCTCTCTGCCCAAGCTGCGCAAGTTGGAGCTGAGTGACAACAACATCTCAGGTCATTTGGAGACACTTTCAGAGAAGTGCCCCAACCTGACGTATCTAAACCTGAGTGGCAACAAGATCAAGGGGCTGAACAACGTTGAGGCCCTGCAAAATCTGAAGAACCTGAAGAGCCTGGACCTGTTTAACTGTGAGATCACCACACTGGAGGAGTACCGTGAGAGCATCTTTGAGCTGCTGCCTCAGGTCACCTACCTGGACGGCTTCGACCAGGAGGACAACGAGGCCCCTGACTCAGAGGCAGACGACGACGACGAGgatgagggggaggatggagccGGACCCACAGGGGActatgatgatgaagatgaggatgaggagggggaggaaggaggagaggttgGGCTCTCCTACCTGATGAAGGAAAGGATCCAGgaCGAAGAAGATGATGACGACTAcgcagaggaggaggaagaagAGGAGAAGGCAGGAGTcaaaggggagaagaggaagagggatgcTGAGgacgaaggggaggaggaggatgatgatgacgaCGACTAGGCTTGTCTTTCCCCTGCGAACCTCTAAGTAGAACAATAACCACAAAAAAGTGTGATCTTGCAGATTGTTTCTCTTTGTATACCATAGATATCACTGTAGAGGCTGTTtcttttatatataaatatatatatgagatACTATACGAAAAGGCGATTTTATCGACAAATAATTTGTTCATCGTTCTAAGTTAAATTACCACCCCAAAAATCTTGTCAATATGCAGGCAGTCTAAAATTAATGGATGTAGGGGGGTGGGCGGGGCTGGATTTATGTTATGAGCTAATTTAAGAAGGGCTGTCGCTACAATGACCAGCCATCCGCACAACAGAAGTGGCCCACGCTGTCCCTCGTTGACATTCGTGTTCAACAAAACTCCAGTGACGTTCCAAGGCCCATGACAGGCCAGGCAGCCCAGAGTCCAGTCCAGCCCAaagagatagaggactcatctttgtatctgtgccattatagcatcTGTGACTGCATGGGCAGTCtcaattttaaagtagtcaattttcttcacgattggctgatccctcctgatgactcGCAACAtggtcaccaggagggatcagccaatgaagttaGAAGTCCTACTCAGTTGAcaacattaaaatggtggaagccctcaatggcgctgcccatgctaatacggccttttggccactagaggcctctatcattctctatggccCAGCCAAGTCTGATCTACCTCTCTGGGCCACGGTGAGAAGAGAATGCCCCCTACAGGACAACACTCTACACAGAACCACCCTCACTACTCAGGCGGCCAGGCATACCAGGCTAGAAAAAAAGGCACCAGGAAGTTTAGGAACCTCTACCGTCATCACTGTCTGCCACAAGCagtctcctctttctccccagcCACCCCAATGCATTTGTACCAGATCGTTTCCAGCCATCAATGAAAGTCCTGTCTCCCGTAAGCATAGCAAAGACTGTGTTAGATCCCTCACACAGTACATGACTTGTTTTAGGAATTTTTTAAATCGTGGGAGGTTGGGAGATCCAGAAAAGTAATCTAGCAGTTTCAATACCAGCGTTAGCCCTGGGGAGTTGTATTTCCAACTGATGTGCAAACCGACCACAACATTTGTTAGGGCCATAGAGCTGTGGCTTTCCAGGACTGGTGCTGGTAATCTGTATTCTAAATCAAACCTAGCGGTTTGGCCTTAACCTTATCTGTCCTTAACGGATGCAAACCAATATATTTCCTTCTGGTTCAACAGGCCATATCTGTTAACAGCTTTAAATACTGTAACCGGACTATTAATGTTGTTGTCACGGTGATAGAGGGGCACGGCCATAATGTTTATATTGAAAAAGTTAAGGTCAAACCGCTTCAGTGTAGGAATGAACCGCATCCCGAAGTTAATTTTTATCTTTGTCTTGCTGTTGATGCAAGTTAGTTTATAATTGTACTGGTATTTTACACAGCAGGAACTTTAATCTATTATTTGTAAGGCAATATGTAAATAGTTTCAGTTCCAACAGTTTGATGtttcatgtgtttttttgtgtgttttttttaatgacttTTTTCGTCATTTTGTTTTAATATAAAGCACAGGTCAAGAAGCCAAACTCTGACCTAACACACTCAATATAGATTATTTTCCATCCTTGGCTGTTGTGACACgttgtgttttgtgtggtgtAAACATCTTAAAATAAGGATTTTGAATAAAACAATATATAAACAGAAAA

Function

NR:

description
PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18648 ANP32E; acidic leucine-rich nuclear phosphoprotein 32 family member E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572100.2 True 3008 mRNA 0.45 7 41946262 41962098

Neighbor

gene id symbol gene type direction distance location
LOC110496284 LOC106588339 coding downstream 105006 41829155 ~ 41841256 (-)
LOC110496283 LOC106588340 coding downstream 134103 41779561 ~ 41812159 (-)
LOC110496281 LOC106588342 coding downstream 194198 41723314 ~ 41752064 (-)
LOC110496279 LOC106588343 coding downstream 224300 41704525 ~ 41721962 (-)
LOC110496277 LOC106588347 coding downstream 274746 41663436 ~ 41671516 (-)
LOC110496289 jtb coding upstream 47751 42009849 ~ 42014114 (-)
LOC110496292 LOC106588330 coding upstream 66192 42028290 ~ 42035215 (-)
LOC110496293 tcpg coding upstream 75176 42037274 ~ 42046633 (-)
LOC110496294 LOC106588328 coding upstream 86003 42048101 ~ 42056179 (-)
LOC110496296 LOC106588326 coding upstream 94289 42056387 ~ 42075432 (-)
G1549977 NA non-coding downstream 4096 41941726 ~ 41942166 (-)
G1549973 NA non-coding downstream 16258 41929778 ~ 41930004 (-)
G1549972 NA non-coding downstream 17793 41927970 ~ 41928469 (-)
G1549971 NA non-coding downstream 18690 41927335 ~ 41927572 (-)
G1549970 NA non-coding downstream 19104 41926729 ~ 41927158 (-)
G1550006 NA non-coding upstream 10440 41972538 ~ 41972767 (-)
G1550020 NA non-coding upstream 30755 41992853 ~ 41993106 (-)
LOC100135825 tyr non-coding upstream 126137 42088179 ~ 42093200 (-)
G1549997 NA non-coding upstream 140350 42102448 ~ 42102902 (-)
G1549996 NA non-coding upstream 141794 42103892 ~ 42104540 (-)
LOC118941164 LOC106588367 other downstream 1037637 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1260621 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1554379 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2257581 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 353188 42315286 ~ 42316079 (-)
G1550202 NA other upstream 397050 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 932933 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1668908 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2858665 44820763 ~ 44828808 (-)

Expression


Co-expression Network