LOC110496292 (LOC106588330)


Basic Information

Item Value
gene id LOC110496292
gene name LOC106588330
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42028290 ~ 42035215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951048.1
CATGTGTATGCCGTAAAAGAAAGATGGCGGCGGATATTTTGTACACAATCCACGTTTGTCTTATTTATGCTTTTAACGGTTCGGTTTTCTTCTAGTTTTATCGGCAATGGTAATAACTACCGTCGGAATGTATCCCTGGAGCTGAACCCTGGTCTGAACTCCTTGCTGACACCGCTGCCCCCTGGTGTTGGCTTGCTCCATGTGCGGGCGCTCGGCAAAAACAACACACTGCATTACCTCCTCTGCAGCCAGGGGGCGCCCGCGTTACTACTGGTGCACACAAGCTCCATTTCATCCAAGGTGGAGGTAGACTGGCCTGCCTTCCTCATGCAAAATACCACAGGCAGCCTGAAAGTGACTCCAGAGAGCAGTGTTCTGTACAGCAACGCACTCGTCTTTACCAGGCTGTGGGAGTATGACGATGTCAACGACACAGCTGACCCTGAGCACCTACCCCCCTCCAGCTTTTTCCAGCCCTACGAGCTGCAGAATTTCACCTGGGGCGACCTGAACAAGACATTGGACCCCACAGGCCACACCGCCCTGCTTTGTGGAAGAGACGCCAGCGAGAGCTTCAGCAATGGCTTGCTCTGTCTGAAGTTCTCAGCCTTTGATTTTGAGGGGCGTGACCAAGGCTGGCCCAGTCTCCTCCACAACGCTAACTCCTCCCAGCTGAGGATGGGGCTGGACGTCGTGGCCCCGAGGTCCAATCGCTCCCGCTTTTCCCTAGAGCTACAGGCCGTGGGAGACTCCCAGCCCATGAGCAGAGTGGACATGCTCCGGTCAATAGATGACGAATACACACCCTCCATATTCAagGTATCTCAGTGGGTGTCCTCTCCAGTCAACTCCACCTCCCCTGTTCTTGGCTACGCCCAATGGAAGCCCGTGGCCTACCGCAGGCCGTCGCCTGTGTTTGAGGATGCCACTCCCTGCCGGCACTCAACGCCTGTCCCTGTAGCCCAGCTTCCCCCCTCCGGCCTGGTGCGGGCTTATTTTGGAGGGGAGCACCAGACCACCGGGCTCAACATGACCTTCAGTATCACTGGAGACCCATTCTACAACACCACCTCCTACCTTAGCTGGACTGTGTTGGTGGGACTGGGCTCTCCTCCTGTGGACTTGTTTTCTCCCCTGGTTCTGGTCATCATGGTGGTGGGGCTGGGCACACCCATGCTGATCATCCTGCTGGgcggggtgtgtgcgtgtgtccgcAAGAACAGGCCCCAAACGCAGGTTTACGAGCCAATCCAGGCCAAGCCAGGATATGTGTCCCGCCTTTAACCATTTTCTAGCCAATGAACAGAGACACCTCTGGGCACAGTTTTTCAAAAGTTTTCTATCTGGATTTACCCTATCGGATACGATTAAATGCATAGAGAAAGTGTCCGGCAGGTGTCAATCTTTTTAAAAATATGAGGTGCACTGATACATGTGGAATACACCACTTGCACGGAGCTCTGTCTAATACGGCCATCCATTGTTGGCACAATCAACCAATAAGTCTTTGACAGAAACTCATTTCTAACCACTTGCATAATTTGGGAATAGGCTGAATCATCCTGTGGACGAGAGTCAATTAATGAGTGCGTTTATTTCTGCTTGTGAATACAGCAAATTGTGAAAATGCTTCTTACTGTAGTTATactttattattataatttttttaaactcaTGATTAAGTACACACTTTCAGTTCTGTGTAAAACAATATATTATCTTATCATTGTTGCTCAACAAACAGTACACGATGACATGTTACACTGAAGCTGTCTGTTTGGCACTGCCAAGATAGGATATACTGACCTCACATGGGTCCTACACTGTCTAATGATCGACTCACGCACATATAAATATCTGACGACATTAGAAGAGTCAGAAGggagcagggttttttttttctcaaaccCTGATCTGAGGTCAGTTTTTATTGTAATGGTTTAATAATTGGTGAAGATAAGCTAATCCTGGATCTGCACCTGAAGGAGACCCACACCTGGAGCAGTGAGAGGAAAATAAATCTCAGGGAAGAACCTTATAGAAACAAGGTTTGTTGCTTTCTTTCCAAACCCCCTGGATGTTAGTTATTCTTTGGGGAAATGGGAAGCATAGTTTGGGTCCATGTGCTCTTCAAAGTAAACTGAAATGTGATCATTCTAAAATATGTTTTAGGCTTGTTTTAAATTATTGATTAATGTTTATTTGAGATTCAATGTGTCAGTTAAATTAAGTTAGAAATCGGTATGGGATTAGAAAATGTTTTGTATGATCTTGTAATTAATGTTACTTTGACACCCAGTGTTGATTGTTGCCACACAACATTTTTTTGTCAAACTTCTCCTTTGGAATGAATTTAAAACATGCTTCATAATCAGGTTGTAATCACAGAGTAAATTACCTTGTGGAGTTTTTACCTGTGCTTTTCTATTAGGCAACAATATGTTACCTTAATTTCAGAGCTAAATGCAAAAACACCAGTACCTGAAATATTATTATGCAATCTAATACACAGGTCATGTTCATTTTATTTTGAGGAGACTTTTAAATGAACTGAATGGTAATGTATTGTCTCAATCCatacaattgtatttttttttaaagaagaaatGGATAGGCAAGTTATTTACTGCTCATTTATTTTCTTTGTTAAACAATGTCTGGTACACAATGTCATTACAGAAATGTCAACATGTTTAAAAAAGCAACAAGGACCTCTAAATATAACTGGTTTCTTGGCCACATTTTATGTACACAATATTGTtttagattatatatatatatatatatattttttttttccatcTCTACAAGAGATGGGAAAAGGCAGGCTGTTAGAATGTACATAATTGtattacaaaatatattttttctttacAAAC

Function

NR:

description
glycosylated lysosomal membrane protein-like

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951048.1 True 2879 mRNA 0.44 7 42028290 42035215

Neighbor

gene id symbol gene type direction distance location
LOC110496289 jtb coding downstream 14176 42009849 ~ 42014114 (-)
LOC110496288 LOC106588334 coding downstream 66192 41946262 ~ 41962098 (-)
LOC110496284 LOC106588339 coding downstream 187034 41829155 ~ 41841256 (-)
LOC110496283 LOC106588340 coding downstream 216131 41779561 ~ 41812159 (-)
LOC110496281 LOC106588342 coding downstream 276226 41723314 ~ 41752064 (-)
LOC110496293 tcpg coding upstream 2059 42037274 ~ 42046633 (-)
LOC110496294 LOC106588328 coding upstream 12886 42048101 ~ 42056179 (-)
LOC110496296 LOC106588326 coding upstream 21172 42056387 ~ 42075432 (-)
LOC100135825 tyr coding upstream 52964 42088179 ~ 42093200 (-)
LOC110496298 LOC106588323 coding upstream 70389 42105604 ~ 42132219 (-)
G1550020 NA non-coding downstream 35184 41992853 ~ 41993106 (-)
G1550006 NA non-coding downstream 55523 41972538 ~ 41972767 (-)
G1549977 NA non-coding downstream 86124 41941726 ~ 41942166 (-)
G1549973 NA non-coding downstream 98286 41929778 ~ 41930004 (-)
G1549972 NA non-coding downstream 99821 41927970 ~ 41928469 (-)
G1549997 NA non-coding upstream 67233 42102448 ~ 42102902 (-)
G1549996 NA non-coding upstream 68677 42103892 ~ 42104540 (-)
G1550073 NA non-coding upstream 133851 42169066 ~ 42169326 (-)
G1550104 NA non-coding upstream 156647 42191862 ~ 42192144 (-)
LOC110496277 LOC106588347 other downstream 356776 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1119665 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1342649 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1636407 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2339609 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 280071 42315286 ~ 42316079 (-)
G1550202 NA other upstream 323933 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 859816 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1595791 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2785548 44820763 ~ 44828808 (-)

Expression


Co-expression Network