LOC100135825 (tyr)


Basic Information

Item Value
gene id LOC100135825
gene name tyr
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42088179 ~ 42093200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124219.1
GGAGAAGTCAAGTAAGAGCCGCGGGGACTCTGACATGGCTGGACTACTAGGCACATGTGTTTCCCCTTCTCTCACTTCTACTTACCAACTCCTCTCTCCATTACTATCAAGACACATCACCGGGCTGGTGTGTGTGACAGGACCGGACGGGACGGGACAGGTGTGATGTATTGCGATGCCGCTCCTTCTCATCCACGGTGTGTTTTTCCTCCAGTGTTTGCGGTTCTCCCAGCAGCAGTTTCCCAGGCTCTGCGCCACAACGGAGGCCCTGCTCTCTAAAGAGTGCTGCCCGGTCTGGGAAGGGGATGGTTCGGCCTGCGGGGCCAGCTCTGGCAGGGGGTTCTGCCGGGACGTGGAGGTATCGGATCTCCCCAACGGGCTGAATTACCCCTTCTCCGGCTTGGACGACAGAGAGAGGTGGCCTCTGGTATTTTATAACCGGACCTGCCAGTGCGCTTCCAACTACATGGGGTTCAACTGCGGAGAGTGCCAGTTCGGACTGTTTGGGGCTAActgcgaggagaggagagagtccgTGCGGCGGAACGTGTTTCACCTGTCGGCAGCGGAACGGCGGAAACTCATCTCTTACCTCAACCTGGCCAAGCACACCGTTAGCCAGGATTATGTCATAGCCACCGGGACCTACCGGGAGATGAATAACGGGAGCACCCCGCTGTTCTCTGACGTCTCGACCTATGACGTGTTTGTGTGGATGCACTACTATGTCTCCAGGAATGCTCTTCTCGGTGGACCGGGGAATGTCTGGACCGATGTGGACTTCGCCCACTGGGCTCCCGCCTTTCTGCCGTGGCACCGTGTGTACCTGCTGCACTGGGAGCGCGAGATCCGAAAACTGACCGGGGACTTTGAGTTCTCCATCCCGTACTGGGACTGGCGGGACGCGCAGGGCTGTGACATCTGCACCGAAGACCTGATGGGCGCCCAGAGCCCGCGAGATCCCAACCTCATCAGCCCTGCTTCAGTGTTCTCTTCTTGGAGGgtgaTGTGTTCACGGGCGGAAGACTACAGTGTGAGGGGGGTTCTGTGTGACGGTAACGACGAGGGGCCGTTGCTGCGTAACCCTGGCAACCACGACCATAACTTGGTTGCGCGGTTGCCGACGGCAGCAGAGGTGGAGTTCACGGTCAGTCTCCGTGACTACGACACGGGAGCCATGGACCGCTCCGCTAACTTCAGCTTCAGAAACACACTAGAAGGTTTTGGGAACCCTCAAACAGGCCTGGGTAACAGTAGGGTGTTGGGGATGCACGCCTCTCTTCATATCTTCATGAACGGCTCAATGTCTTCAGTCCAGGGGTCAGCTAACGACCCTATTTTCCTACTGCACCACGCCTACGTAGACAGtATCTATGAGCAGTGGTTGAGGAGACATGCTCCAGAGCAGACCCACTACCCAGAGTTCAATGCTCCCATTGGCCACAATAGGCAGTACCACATGGTGCCCTTCATACCTCTACACAGAAACATAGAATACTTTACCTCCAGCAAAGAACTGGGGTACCAATACTCCTACATGCTCAACTCAGATCAGAGGATATCGGAGGTTCTCAGTCCTTACCTGGAGCTAATGATGGAGGCGTGGCCCTGGTTGCTAGGGGCGTTGGTCCTGGGGGCGCTGGTTACCATGACTGTGGCTGCAGTAGCTGCGACTATGACCCGGATGTGTTGGAGTGCGTGGCCATGGCAACTCGGGGAGAAGAGTTCAGTATTCCACCTACCAGAGAGGGAACCGCTCATCATCAGCAGTGATAGTGATACCCCCAACTACCACACTATTTAGTCCCAACTACCACACTGTTTAGTCCCAACTACCACACTGTTTAGTCCCAACTACCCCAACTACCACACTGTTTAGTCCCAACTACCACACTGTTTAGTCCCAACTACCCCAACTACCACACTGTTTAGTCCCAACTACCCCAACTACCACACTGTTTAGCCCCAACTACCCCAACTACCACACTGTTTAGTCCCAACTATCACACTGTTTAGCCCCAACTACCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACGAGCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACTACCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTAGCCCAATGAGCAAGGAGAGTGTGCGACTCTCTTTGTTTTTCTAGCTTCCAGTTTATtctccgttagtcagcacctcaaCACTAAATCATGTACTCTGGGGGTGCTCCAGCTCATACTTTTTATTGGGCTATGTTAGGAGTTGTGCCATGAACATATGTTATACTTATATTTTACAGTGCTATGTCAACTCACACTGCCTTTGACTTTAGTAGGAATATAGAGGAATGAAATATTGAAAAAGGAGTATTGCATTGGACGGCTCATAATGatggctggaacggagccaatggaatggcatcaaacattaGGAGACCATGTgtttgtatttgataccattccaccaattccactccagccattaccacaagcccattcaccccaattaaggtgccaccaacctcctgtggtaaaCATATACAATAAAAAGACACCCTTTTACAGTAGATGTGCTTGATTTACATCGGATTGTGCATTCTTGGGTCATTCTGTTGGCTCCAAAGCGGGATCTCTGTCTACCGGCACACCGCCCGAGCTCAACCAAGCGCACCAATTGATTGACAAGCACACAAATCAGGAGGAGCATGTGTCGGGTGCGTCACTTGAATCACCGGCAACGAGATGTGTTCTGGCACATGTGGAATGTTAGTTTTAGATTCCTCCCCCGTTAGTCTAAAAAGTGTGCAAGAGTTcatggagtctctctctctcaaaaggtCATAACTATGTTAAATGATTATGATATTAATAAAGAAAAAAGGCTAAAAAATAA
>XM_036951025.1
GGAGAAGTCAAGTAAGAGCCGCGGGGACTCTGACATGGCTGGACTACTAGGCACATGTGTTTCCCCTTCTCTCACTTCTACTTACCAACTCCTCTCTCCATTACTATCAAGACACATCACCGGGCTGGTGTGTGTGACAGGACCGGACGGGACGGGACAGGTGTGATGTATTGCGATGCCGCTCCTTCTCATCCACGGTGTGTTTTTCCTCCAGTGTTTGCGGTTCTCCCAGCAGCAGTTTCCCAGGCTCTGCGCCACAACGGAGGCCCTGCTCTCTAAAGAGTGCTGCCCGGTCTGGGAAGGGGATGGTTCGGCCTGCGGGGCCAGCTCTGGCAGGGGGTTCTGCCGGGACGTGGAGGTATCGGATCTCCCCAACGGGCTGAATTACCCCTTCTCCGGCTTGGACGACAGAGAGAGGTGGCCTCTGGTATTTTATAACCGGACCTGCCAGTGCGCTTCCAACTACATGGGGTTCAACTGCGGAGAGTGCCAGTTCGGACTGTTTGGGGCTAActgcgaggagaggagagagtccgTGCGGCGGAACGTGTTTCACCTGTCGGCAGCGGAACGGCGGAAACTCATCTCTTACCTCAACCTGGCCAAGCACACCGTTAGCCAGGATTATGTCATAGCCACCGGGACCTACCGGGAGATGAATAACGGGAGCACCCCGCTGTTCTCTGACGTCTCGACCTATGACGTGTTTGTGTGGATGCACTACTATGTCTCCAGGAATGCTCTTCTCGGTGGACCGGGGAATGTCTGGACCGATGTGGACTTCGCCCACTGGGCTCCCGCCTTTCTGCCGTGGCACCGTGTGTACCTGCTGCACTGGGAGCGCGAGATCCGAAAACTGACCGGGGACTTTGAGTTCTCCATCCCGTACTGGGACTGGCGGGACGCGCAGGGCTGTGACATCTGCACCGAAGACCTGATGGGCGCCCAGAGCCCGCGAGATCCCAACCTCATCAGCCCTGCTTCAGTGTTCTCTTCTTGGAGGgtgaTGTGTTCACGGGCGGAAGACTACAGTGTGAGGGGGGTTCTGTGTGACGGTAACGACGAGGGGCCGTTGCTGCGTAACCCTGGCAACCACGACCATAACTTGGTTGCGCGGTTGCCGACGGCAGCAGAGGTGGAGTTCACGGTCAGTCTCCGTGACTACGACACGGGAGCCATGGACCGCTCCGCTAACTTCAGCTTCAGAAACACACTAGAAGGTTTTGGGAACCCTCAAACAGGCCTGGGTAACAGTAGGGTGTTGGGGATGCACGCCTCTCTTCATATCTTCATGAACGGCTCAATGTCTTCAGTCCAGGGGTCAGCTAACGACCCTATTTTCCTACTGCACCACGCCTACGTAGACAGtATCTATGAGCAGTGGTTGAGGAGACATGCTCCAGAGCAGACCCACTACCCAGAGTTCAATGCTCCCATTGGCCACAATAGGCAGTACCACATGGTGCCCTTCATACCTCTACACAGAAACATAGAATACTTTACCTCCAGCAAAGAACTGGGGTACCAATACTCCTACATGCTCAACTCAGATCAGAGGATATCGGAGGTTCTCAGTCCTTACCTGGAGCTAATGATGGAGGCGTGGCCCTGGTTGCTAGGGGCGTTGGTCCTGGGGGCGCTGGTTACCATGACTGTGGCTGCAGTAGCTGCGACTATGACCCGGATGTGTTGGAGTGCGTGGCCATGGCAACTCGGGGAGAAGAGTTCAGTATTCCACCTACCAGAGAGGGAACCGCTCATCATCAGCAGTGATAGTGATACCCCCAACTACCACACTATTTAGTCCCAACTACCACACTGTTTAGTCCCAACTACCACACTGTTTAGTCCCAACTACCCCAACTACCACACTGTTTAGTCCCAACTACCACACTGTTTAGTCCCAACTACCCCAACTACCACACTGTTTAGTCCCAACTACCCCAACTACCACACTGTTTAGCCCCAACTACCCCAACTACCACACTGTTTAGTCCCAACTATCACACTGTTTAGCCCCAACTACCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACGAGCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACGAGCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACTACCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTAGCCCAATGAGCAAGGAGAGTGTGCGACTCTCTTTGTTTTTCTAGCTTCCAGTTTATtctccgttagtcagcacctcaaCACTAAATCATGTACTCTGGGGGTGCTCCAGCTCATACTTTTTATTGGGCTATGTTAGGAGTTGTGCCATGAACATATGTTATACTTATATTTTACAGTGCTATGTCAACTCACACTGCCTTTGACTTTAGTAGGAATATAGAGGAATGAAATATTGAAAAAGGAGTATTGCATTGGACGGCTCATAATGatggctggaacggagccaatggaatggcatcaaacattaGGAGACCATGTgtttgtatttgataccattccaccaattccactccagccattaccacaagcccattcaccccaattaaggtgccaccaacctcctgtggtaaaCATATACAATAAAAAGACACCCTTTTACAGTAGATGTGCTTGATTTACATCGGATTGTGCATTCTTGGGTCATTCTGTTGGCTCCAAAGCGGGATCTCTGTCTACCGGCACACCGCCCGAGCTCAACCAAGCGCACCAATTGATTGACAAGCACACAAATCAGGAGGAGCATGTGTCGGGTGCGTCACTTGAATCACCGGCAACGAGATGTGTTCTGGCACATGTGGAATGTTAGTTTTAGATTCCTCCCCCGTTAGTCTAAAAAGTGTGCAAGAGTTcatggagtctctctctctcaaaaggtCATAACTATGTTAAATGATTATGATATTAATAAAGAAAAAAGGCTAAAAAATAA
>TU1773542
CCCATTTACCCCAACGAGCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACGAGCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTACCCCAACTACCACACTGTTTAGCCCCAACTACCACACTATTTAGCCCCAACTACCACACTGTTTAGCCCCATTTAGCCCAATGAGCAAGGAGAGTGTGCGACTCTCTTTGTTTTTCTAGCTTCCAGTTTATtctccgttagtcagcacctcaaCACTAAATCATGTACTCTGGGGGTGCTCCAGCTCATACTTTTTATTGGGCTATGTTAGGAGTTGTGCCATGAACATATGTTATACTTATATTTTACAGTGCTATGTCAACTCACACTGCCTTTGACTTTAGTAGGAATATAGAGGAATGAAATATTGAAAAAGGAGTATTGCATTGGACGGCTCATAATGatggctggaacggagccaatggaatggcatcaaacattaGGAGACCATGTgtttgtatttgataccattccaccaattccactccagccattaccacaagcccattcaccccaattaaggtgccaccaacctcctgtggtaaaCATATACAATAAAAAGACACCCTTTTACAGTAGATGTGCTTGATTTACATCGGATTGTGCATTCTTGGGTCATTCTGTTGGCTCCAAAGCGGGATCTCTGTCTACCGGCACACCGCCCGAGCTCAACCAAGCGCACCAATTGATTGACAAGCACACAAATCAGGAGGAGCATGTGTCGGGTGCGTCACTTGAATCACCGGCAACGAGATGTGTTCTGGCACATGTGGAATGTTAGTTTTAGATTCCTCCCCCGTTAGTCTAAAAAGTGTGCAAGAGTTcatggagtctctctctctcaaaag

Function

symbol description
tyr Enables catechol oxidase activity. Acts upstream of or within several processes, including dopamine biosynthetic process from tyrosine; iridophore differentiation; and melanosome organization. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; male organism; melanoblast; neural crest; and presumptive retinal pigmented epithelium. Used to study color blindness and oculocutaneous albinism. Human ortholog(s) of this gene implicated in melanoma (multiple); ocular albinism; oculocutaneous albinism (multiple); retinoschisis; and vitiligo. Orthologous to human TYR (tyrosinase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124219.1 False 2975 mRNA 0.52 6 42088179 42093200
XM_036951025.1 False 3050 mRNA 0.52 5 42088179 42093200
TU1773542 True 946 lncRNA 0.45 1 42088235 42089180

Neighbor

gene id symbol gene type direction distance location
LOC110496296 LOC106588326 coding downstream 12747 42056387 ~ 42075432 (-)
LOC110496294 LOC106588328 coding downstream 32000 42048101 ~ 42056179 (-)
LOC110496293 tcpg coding downstream 41546 42037274 ~ 42046633 (-)
LOC110496292 LOC106588330 coding downstream 52964 42028290 ~ 42035215 (-)
LOC110496289 jtb coding downstream 74065 42009849 ~ 42014114 (-)
LOC110496298 LOC106588323 coding upstream 12404 42105604 ~ 42132219 (-)
LOC110496297 LOC106588322 coding upstream 51958 42145158 ~ 42268090 (-)
LOC110496299 LOC106569884 coding upstream 186325 42279525 ~ 42286932 (-)
LOC110496300 LOC106588320 coding upstream 198467 42291667 ~ 42297772 (-)
stom stom coding upstream 347145 42440345 ~ 42451777 (-)
G1550020 NA non-coding downstream 95073 41992853 ~ 41993106 (-)
G1550006 NA non-coding downstream 115412 41972538 ~ 41972767 (-)
G1549977 NA non-coding downstream 146013 41941726 ~ 41942166 (-)
G1549973 NA non-coding downstream 158175 41929778 ~ 41930004 (-)
G1549972 NA non-coding downstream 159710 41927970 ~ 41928469 (-)
G1549997 NA non-coding upstream 9248 42102448 ~ 42102902 (-)
G1549996 NA non-coding upstream 10692 42103892 ~ 42104540 (-)
G1550073 NA non-coding upstream 75866 42169066 ~ 42169326 (-)
G1550104 NA non-coding upstream 98662 42191862 ~ 42192144 (-)
G1550157 NA non-coding upstream 177080 42270280 ~ 42270895 (-)
LOC110496277 LOC106588347 other downstream 416665 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1179554 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1402538 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1696296 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2399498 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 222086 42315286 ~ 42316079 (-)
G1550202 NA other upstream 265948 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 801831 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1537806 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2727563 44820763 ~ 44828808 (-)

Expression


Co-expression Network