LOC110496299 (LOC106569884)


Basic Information

Item Value
gene id LOC110496299
gene name LOC106569884
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42279525 ~ 42286932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952865.1
CGTGGTGGACTGGTGCAAGGTGTGAGATGGCCTTCCCCAGAGTGAAGGCAGCAGCGGATGAGACTGCCTTCAGCGAGTGTCTGCTGAAGAGGAACCAGGACCTCAGCCCCACACCCGCAGAGCAGTCCTCTATCTTGTCCCTGGTCACCAAGATCAACAACGTCATCGACAACCTCATTGTCGCCCCCGGCAACTTTGAAGTGCAAATTGAAGAGGTACGTCAGGTGGGCTCATACAAGAAAGGCACCATGACAACGGGACACAATGTCGCTGACCTGGTGGTCATCCTCAAGATCTTGCCCACGCTGGAGGCTGTCGCGGCTCTCGGCAACAAAGTGGTGGAGACCCTCCGCACACAAGACCCTGCTGAAGTTCTCTCCATGCTGACGAATGAGACAGGTTTTGAGATCAGCTCTGCCGATGCAACAGTGAAAATCCTCATCACCACTGTTCCCCCCAACCTGCGCAAGCTGGACCCCGAACTGCACTTGGACATCAAGGTGCTGCAGAGTGCTCTGGCCGCCATCCGACATGCCCGCTGGTTTGAGGAGAACGCCTCCCAATCTACGGTGAAAGTGCTGATTCGCCTGCTGAAGGATCTGAGGGTGCGTTTCCCCGGGTTCGAACCTCTCACCCCCTGGATCCTGGATCTACTGGGTCATTCTGCGGTCATGAACAACCCCTCCAGACAGCCCCTGTCACTCAATGTGGCTTACAGACGCTGCCTACAGATGTTGGCCGCTGGACTTTTCCTGCCAGGCTCAGTGGGCATCACTGACCCCTGTGAGAGTGGAAACTTCCGGGTGCACACCGTTATGACCCTCGAGCAGCAGGACATGGTTTGTTTCACTGCTCAGACGTTGGTCAGGGTCCTCTCTCATGGAGGGTACAGGAAGATCCTGGGCCTGGAGGGTGATGCCAGCTACCTGGCTTCGGAAATGTCCACATGGGACGGCGTGATCGTCACACCCTCTGAGAAGGCCTACGAGAAGccgccagagaggaaggaagaggaggatgaggcgctggaggaaggaggagatgtCGAGGATGAAAGCATGGAGACACAGGAGTGAGGAAGAACCCGGAAAGTGATGCGCCACCAGTGAGCTGCCAGAGGATCCTGTGCCACATCTTTTTAAATGAACGTTTACCCCTGACCCTTTGAGACCCTTCACTCGCCCCTTTGTCCTTCAATGAAGTTCATGTCCACTAATGAATTGACTGCAACGACCTGGACCAAAGTTCTCCCACTGGACGGAGAGACTCGCATAGACTGTTACTGGTCCCTCAACGCCATCAACAAAAATGAAATTCACGGCCTTTCCAGAAAGGGACGGGTGTTGCTATCTATTTGTATTCCGTGTCTTTGTCTGGTTTTTACTTTGTAGCAGCAATGATGACTAAATTAAacagctttttaaaaaaaatgtaatgcctCTTTACGTAAATACAGTAATGCAtactttttaaattatttttttcaaatgtgTGGCTGGCTGGATAGAAAACGTAGGCCCCATGCTTGTGAAAAGACATACTTCATTTTCAGAGGTTAGATCTGGTCGTGTAATTACCTCCACAGATCATTTCCAGTCTAGGTACCCTAAATTTGACAAACCTTTTTTAGTATTTAATTTATTGGATCACAGTTAAACTTAAATGCTGTTTTGCAGTTCAGATTTGAGAGGTTACTGGTAAGAGGAGCATTTAATTCAAAACATAATTGTCAACAAAACAATCTGATCATAAGATGCCATGTAACTTGTGAAAAACTAACGTTCATACTCCTTTTTATATCAAAACTCATAAACACGTCACTGAATAAGGATCATGATTTAATTGATGCAAGTGTTAGACAACTTGGTATTAGTTATAGGTAGGCTTATTGTTTTTGGTTACCTTGCTAATAACCAAACGTCTCCAAATAATGCTCTTAAGTTGGCACTGGAAAATACCTGGATCTTTTGATTGGACTCAACATATCCTATTAAATTGCTTGAGTGGCTCTCTGTCACTAAACCCTCCCTCAACGTTCCATAATGGGGTGAAAATAgcagccatcttggtcagggagaaatccaaagcCGGTCTAATTGGAATTGAAAAGCAGTAGAGGCATAAGTAGTGTGTTTCCTGCTTTTACTTATGCAGGAAATCAAAGCAATGCATGTGATgtatcagaaattgtgtaatgGAATTATAGTCAACTGAAAATGTCATAATTTatcaatacagttttatatgggttttatacacattttctgtataaatagtctttaaaatatatgtaaacagac
>XM_021572118.2
GCTGTATGTACTGGTATCGGGTAATTGGGGTAGAAATTTTTATCTGGACCTGGCAACCCTGACTCCATTAGTAGTCTGCCTGACCGGCATTGGATGCTGGTGATTTTTCTGTGAACATCTACATTAAAACATCAAAACGTCTTACGCGATGAGAGGCGATAGGGGCAGGGGCCGGGGTGGCCGGTTCGGGTCACGTGGTGGACTGGTGCAAGGGTATCGGCCATTTGTCCCCCACATTCCCTTTGACTTCTATGTGTGTGAGATGGCCTTCCCCAGAGTGAAGGCAGCAGCGGATGAGACTGCCTTCAGCGAGTGTCTGCTGAAGAGGAACCAGGACCTCAGCCCCACACCCGCAGAGCAGTCCTCTATCTTGTCCCTGGTCACCAAGATCAACAACGTCATCGACAACCTCATTGTCGCCCCCGGCAACTTTGAAGTGCAAATTGAAGAGGTACGTCAGGTGGGCTCATACAAGAAAGGCACCATGACAACGGGACACAATGTCGCTGACCTGGTGGTCATCCTCAAGATCTTGCCCACGCTGGAGGCTGTCGCGGCTCTCGGCAACAAAGTGGTGGAGACCCTCCGCACACAAGACCCTGCTGAAGTTCTCTCCATGCTGACGAATGAGACAGGTTTTGAGATCAGCTCTGCCGATGCAACAGTGAAAATCCTCATCACCACTGTTCCCCCCAACCTGCGCAAGCTGGACCCCGAACTGCACTTGGACATCAAGGTGCTGCAGAGTGCTCTGGCCGCCATCCGACATGCCCGCTGGTTTGAGGAGAACGCCTCCCAATCTACGGTGAAAGTGCTGATTCGCCTGCTGAAGGATCTGAGGGTGCGTTTCCCCGGGTTCGAACCTCTCACCCCCTGGATCCTGGATCTACTGGGTCATTCTGCGGTCATGAACAACCCCTCCAGACAGCCCCTGTCACTCAATGTGGCTTACAGACGCTGCCTACAGATGTTGGCCGCTGGACTTTTCCTGCCAGGCTCAGTGGGCATCACTGACCCCTGTGAGAGTGGAAACTTCCGGGTGCACACCGTTATGACCCTCGAGCAGCAGGACATGGTTTGTTTCACTGCTCAGACGTTGGTCAGGGTCCTCTCTCATGGAGGGTACAGGAAGATCCTGGGCCTGGAGGGTGATGCCAGCTACCTGGCTTCGGAAATGTCCACATGGGACGGCGTGATCGTCACACCCTCTGAGAAGGCCTACGAGAAGccgccagagaggaaggaagaggaggatgaggcgctggaggaaggaggagatgtCGAGGATGAAAGCATGGAGACACAGGAGTGAGGAAGAACCCGGAAAGTGATGCGCCACCAGTGAGCTGCCAGAGGATCCTGTGCCACATCTTTTTAAATGAACGTTTACCCCTGACCCTTTGAGACCCTTCACTCGCCCCTTTGTCCTTCAATGAAGTTCATGTCCACTAATGAATTGACTGCAACGACCTGGACCAAAGTTCTCCCACTGGACGGAGAGACTCGCATAGACTGTTACTGGTCCCTCAACGCCATCAACAAAAATGAAATTCACGGCCTTTCCAGAAAGGGACGGGTGTTGCTATCTATTTGTATTCCGTGTCTTTGTCTGGTTTTTACTTTGTAGCAGCAATGATGACTAAATTAAacagctttttaaaaaaaatgtaatgcctCTTTACGTAAATACAGTAATGCAtactttttaaattatttttttcaaatgtgTGGCTGGCTGGATAGAAAACGTAGGCCCCATGCTTGTGAAAAGACATACTTCATTTTCAGAGGTTAGATCTGGTCGTGTAATTACCTCCACAGATCATTTCCAGTCTAGGTACCCTAAATTTGACAAACCTTTTTTAGTATTTAATTTATTGGATCACAGTTAAACTTAAATGCTGTTTTGCAGTTCAGATTTGAGAGGTTACTGGTAAGAGGAGCATTTAATTCAAAACATAATTGTCAACAAAACAATCTGATCATAAGATGCCATGTAACTTGTGAAAAACTAACGTTCATACTCCTTTTTATATCAAAACTCATAAACACGTCACTGAATAAGGATCATGATTTAATTGATGCAAGTGTTAGACAACTTGGTATTAGTTATAGGTAGGCTTATTGTTTTTGGTTACCTTGCTAATAACCAAACGTCTCCAAATAATGCTCTTAAGTTGGCACTGGAAAATACCTGGATCTTTTGATTGGACTCAACATATCCTATTAAATTGCTTGAGTGGCTCTCTGTCACTAAACCCTCCCTCAACGTTCCATAATGGGGTGAAAATAgcagccatcttggtcagggagaaatccaaagcCGGTCTAATTGGAATTGAAAAGCAGTAGAGGCATAAGTAGTGTGTTTCCTGCTTTTACTTATGCAGGAAATCAAAGCAATGCATGTGATgtatcagaaattgtgtaatgGAATTATAGTCAACTGAAAATGTCATAATTTatcaatacagttttatatgggttttatacacattttctgtataaatagtctttaaaatatatgtaaacagac
>TU1773712
TTTAATTGATGCAAGTGTTAGACAACTTGGTATTAGTTATAGGTAGGCTTATTGTTTTTGGTTACCTTGCTAATAACCAAACGTCTCCAAATAATGCTCTTAAGTTGGCACTGGAAAATACCTGGATCTTTTGATTGGACTCAACATATCCTATTAAATTGCTTGAGTGGCTCTCTGTCACTAAACCCTCCCTCAACGTTCCATAATGGGGTGAAAATAgcagccatcttggtcagggagaaatccaaagcCGGTCTAATTGGAATTGAAAAGCAGTAGAGGCATAAGTAGTGTGTTTCCTGCTTTTACTTATGCAGGAAATCAAAGCAATGCATGTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0006955 immune response biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952865.1 False 2300 mRNA 0.46 13 42279525 42286269
XM_021572118.2 False 2536 mRNA 0.47 15 42279525 42286932
TU1773712 True 339 lncRNA 0.39 1 42279649 42279987

Neighbor

gene id symbol gene type direction distance location
LOC110496297 LOC106588322 coding downstream 11435 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 147306 42105604 ~ 42132219 (-)
LOC100135825 tyr coding downstream 186325 42088179 ~ 42093200 (-)
LOC110496296 LOC106588326 coding downstream 204093 42056387 ~ 42075432 (-)
LOC110496294 LOC106588328 coding downstream 223346 42048101 ~ 42056179 (-)
LOC110496300 LOC106588320 coding upstream 4735 42291667 ~ 42297772 (-)
stom stom coding upstream 153413 42440345 ~ 42451777 (-)
LOC110496307 LOC106588314 coding upstream 252395 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 268792 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 331142 42618074 ~ 42624506 (-)
G1550157 NA non-coding downstream 8630 42270280 ~ 42270895 (-)
G1550104 NA non-coding downstream 87381 42191862 ~ 42192144 (-)
G1550073 NA non-coding downstream 110199 42169066 ~ 42169326 (-)
G1549996 NA non-coding downstream 174985 42103892 ~ 42104540 (-)
G1549997 NA non-coding downstream 176623 42102448 ~ 42102902 (-)
G1550124 NA non-coding upstream 2933 42289865 ~ 42291075 (-)
G1550170 NA non-coding upstream 20545 42307477 ~ 42307699 (-)
G1550175 NA non-coding upstream 26819 42313751 ~ 42314044 (-)
G1550178 NA non-coding upstream 30866 42317798 ~ 42318049 (-)
G1550181 NA non-coding upstream 35739 42322671 ~ 42323020 (-)
LOC110496277 LOC106588347 other downstream 608011 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1370900 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1593884 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1887642 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2590844 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 28354 42315286 ~ 42316079 (-)
G1550202 NA other upstream 72216 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 608099 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1344074 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2533831 44820763 ~ 44828808 (-)

Expression


Co-expression Network