LOC110496300 (LOC106588320)


Basic Information

Item Value
gene id LOC110496300
gene name LOC106588320
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42291667 ~ 42297772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952868.1
AGGTAGTTAGCACCATTTTgtaaggaaaggagagagggagaataggctGGCCTCagtttatatatacatttttaagcatatactgttttaatcactgtagctagctagtgtagTTCGTATTTTAGTAGTATCCGTAAGAgcaaggtgaaataaaacatctaGTGAGTAGTGGATCCAGATCTGTCGGTTGTAACTAGCTTAACGTTCGCTGCTAACGTTAACCGCTCAAGCTAAGGAGCTTGCTAGCAAAGTGATACACGAGTATCGGCAAAACAAGCAACGATCAAAAGTTCCAGTGAAGTCAAAATGAGTGCTCCCTCCTCCCAAAAAGTTGTGCTGAAAAGCACCACCAAGCAGTCCCTGAATGAGCGGTGAGACGCGCTACGCACCCTGACAGCACTAAGCGAGGCGAAGGTCGAAAAAGTGGTACAGACGGCCCTAGTGGGCTCTACTACGGAAGGCCACTGTTGGGGACCAGACATGGACGCTAGGCTGCCCGGGGCAGACGTGTGCGCTGCTCACTCAAAATGCATGCCATATTCACTCTTTGCTGACATTAGAAGTTTGGAGTGCCTTTTGTGTGAGCAGCGCACACTTAGACCCAAGGAGAGAGGGTAACAGTGATGCTTGCTTCACTACCATGCTGAAGAACAAGGCGCCGACAGCGGTGAGTGTACGAGCTACCATGCAGCAGCAACACATGGCCAGTGCCCGCAACCGCCGCCTCGCCCAGCAAATGGAGAACAGGCCCTCTGTGCAGGCTGCTCTGCACCACAAGCAGAGCCTGAAGCAGCGCCTGGGGAAGAGCAACATCCAGGCCAGGCTGGGCCGGCCCATCGGGGCCTTGATGCGGGGGGGTGCTGGCGGCCGGGGATTCGCTGTTGGAGGGATGCGGGGGATGACGAGAGGAGGCCTGCGAGGTCGCGGCAGAGGAGCCCTGAGGGGCGCTATGGCTCTGAGAGGGAATCGCCTTTCCCCAGGCATGGGCCAGATGCGTGGCAGAGGGGGTCCAGGCCGTGTGGCCCTCCGTAGAGGGATGCGTCAAAGAGGTGGTCGTGGAGGTGCCTTTGGCAGAGGAGCTGGAAGAGGAGTGGGAGCCAGGGGACGAGGTGGTCTGCGTGGGCGTGGTGGCTTCGCTGGCAGGGGTGGTGGCCGCGGTCGCGGGGGTGGAAGAGGAGGCCGCGGCAGGGGAGGTGGCCCAGGAATGACCCGCGAGCAGCTGGACAACCAGCTTGACGCCTATATGTCCAAGACCAAGGGCAACCTGGACGCTGAGCTGGACGCGTACATGGCCCAGGCTGACCCAGAGGGCATGGAGTGAACAAGGACCTCCACCGCGAGCGTAGGGACTCCTTCAATAGGCCCACACTGAGACAGTGCTGATAACATGAAAGACGCAGAGAGAAGCTTGTATAGTACTATTACACCAAACAAATGTAATGATAAATGCACTTACGTAAACTCTGTGCACTGTCTCACATTACATGGATAAAATTTGTGATGTGATCACAACCTCTGCTTGAATATAAAACTCACATTCACTGAcgcacatgcatacaaacacacttGTTCTAAAATTGTGGGCCTATGAAGAGAACTGTTCGAAATTGAACTTTTTCCTGAATGTGGACTTGACCATTCTATCAGTATCAGTACAAAGTAGACTCGCACCGGCACAGTTTGAAACCTTTTTCCTGTGTGTGCATGAAGAATGCAAAGATCTTTTAAACTTGAATGGACGACACTGACCGGAGTAGACTTAAAGAACCAACATCATCAACGCTCCTGAAATGCCTGCTTTTTGGACCAGAATCTCTTGGCAGAATCTGTTTTGAAGCTGAATTGGGACTATTACCGAACTTTGTGTCTATGTCCATATGGTTAAAAGTGCTTTAGCTCCATCATGTCTAACTAGCATCCACTTCTTATATTTCGTAAACCTATTTTTTACTGCCATGTTTTTATGTTAGGATTTGTATTTAGTAGTGGATGCTCCTTTTACTGTGTTAGCAGAAGTGTACAAGGACGTGACTCTCGGGTAGAAAAATCAAATGAAAATTACAAGGGGAATTCTAGAAAAATCTTGTGTTTTTATTCTATTTAACGCCACCATCTTAAGCTTTGCTTCTGGAGAATTTAAATATGTTGCTGTCTTTGGTTGAAACTCCCCTAACAGCATTTTATGGATGCTTGTCATACCAAATAAGCAACTACACGAGATGCTAAATATTTCAATCCAAGTTGCAAAGGTGTGCGAGtggtctcttcctccccccctggTGTCAATTGTAAGAATTTGAGATGGTCTATAAAAAAACGGGTTGTTGTACACCACTCATAAAGTGAGTGAAAATGTTTTCAGATTGTGTCCAACTGGATGAAACTAAACTCCAAATGCTATGTAATTCCCTCTCCTTCCAACTGGTTATTGTCATAGAATAGAGAATAAACGTTCATCTTCTTTTAACATA
>XM_036952867.1
CGTCGTCAGGTAGTTAGCACCATTTTgtaaggaaaggagagagggagaataggctGGCCTCagtttatatatacatttttaagcatatactgttttaatcactgtagctagctagtgtagTTCGTATTTTAGTAGTATCCGTAAGAgcaaggtgaaataaaacatctaGTGAGTAGTGGATCCAGATCTGTCGGTTGTAACTAGCTTAACGTTCGCTGCTAACGTTAACCGCTCAAGCTAAGGAGCTTGCTAGCAAAGTGATACACGAGTATCGGCAAAACAAGCAACGATCAAAAGTTCCAGTGAAGTCAAAATGAGTGCTCCCTCCTCCCAAAAAGTTGTGCTGAAAAGCACCACCAAGCAGTCCCTGAATGAGCGCTTCACTACCATGCTGAAGAACAAGGCGCCGACAGCGGTGAGTGTACGAGCTACCATGCAGCAGCAACACATGGCCAGTGCCCGCAACCGCCGCCTCGCCCAGCAAATGGAGAACAGGCCCTCTGTGCAGGCTGCTCTGCACCACAAGCAGAGCCTGAAGCAGCGCCTGGGGAAGAGCAACATCCAGGCCAGGCTGGGCCGGCCCATCGGGGCCTTGATGCGGGGGGGTGCTGGCGGCCGGGGATTCGCTGTTGGAGGGATGCGGGGGATGACGAGAGGAGGCCTGCGAGGTCGCGGCAGAGGAGCCCTGAGGGGCGCTATGGCTCTGAGAGGGAATCGCCTTTCCCCAGGCATGGGCCAGATGCGTGGCAGAGGGGGTCCAGGCCGTGTGGCCCTCCGTAGAGGGATGCGTCAAAGAGGTGGTCGTGGAGGTGCCTTTGGCAGAGGAGCTGGAAGAGGAGTGGGAGCCAGGGGACGAGGTGGTCTGCGTGGGCGTGGTGGCTTCGCTGGCAGGGGTGGTGGCCGCGGTCGCGGGGGTGGAAGAGGAGGCCGCGGCAGGGGAGGTGGCCCAGGAATGACCCGCGAGCAGCTGGACAACCAGCTTGACGCCTATATGTCCAAGACCAAGGGCAACCTGGACGCTGAGCTGGACGCGTACATGGCCCAGGCTGACCCAGAGGGCATGGAGTGAACAAGGACCTCCACCGCGAGCGTAGGGACTCCTTCAATAGGCCCACACTGAGACAGTGCTGATAACATGAAAGACGCAGAGAGAAGCTTGTATAGTACTATTACACCAAACAAATGTAATGATAAATGCACTTACGTAAACTCTGTGCACTGTCTCACATTACATGGATAAAATTTGTGATGTGATCACAACCTCTGCTTGAATATAAAACTCACATTCACTGAcgcacatgcatacaaacacacttGTTCTAAAATTGTGGGCCTATGAAGAGAACTGTTCGAAATTGAACTTTTTCCTGAATGTGGACTTGACCATTCTATCAGTATCAGTACAAAGTAGACTCGCACCGGCACAGTTTGAAACCTTTTTCCTGTGTGTGCATGAAGAATGCAAAGATCTTTTAAACTTGAATGGACGACACTGACCGGAGTAGACTTAAAGAACCAACATCATCAACGCTCCTGAAATGCCTGCTTTTTGGACCAGAATCTCTTGGCAGAATCTGTTTTGAAGCTGAATTGGGACTATTACCGAACTTTGTGTCTATGTCCATATGGTTAAAAGTGCTTTAGCTCCATCATGTCTAACTAGCATCCACTTCTTATATTTCGTAAACCTATTTTTTACTGCCATGTTTTTATGTTAGGATTTGTATTTAGTAGTGGATGCTCCTTTTACTGTGTTAGCAGAAGTGTACAAGGACGTGACTCTCGGGTAGAAAAATCAAATGAAAATTACAAGGGGAATTCTAGAAAAATCTTGTGTTTTTATTCTATTTAACGCCACCATCTTAAGCTTTGCTTCTGGAGAATTTAAATATGTTGCTGTCTTTGGTTGAAACTCCCCTAACAGCATTTTATGGATGCTTGTCATACCAAATAAGCAACTACACGAGATGCTAAATATTTCAATCCAAGTTGCAAAGGTGTGCGAGtggtctcttcctccccccctggTGTCAATTGTAAGAATTTGAGATGGTCTATAAAAAAACGGGTTGTTGTACACCACTCATAAAGTGAGTGAAAATGTTTTCAGATTGTGTCCAACTGGATGAAACTAAACTCCAAATGCTATGTAATTCCCTCTCCTTCCAACTGGTTATTGTCATAGAATAGAGAATAAACGTTCATCTTCTTTTAACATA
>XR_005037488.1
CGTCGTCAGGTAGTTAGCACCATTTTgtaaggaaaggagagagggagaataggctGGCCTCagtttatatatacatttttaagcatatactgttttaatcactgtagctagctagtgtagTTCGTATTTTAGTAGTATCCGTAAGAgcaaggtgaaataaaacatctaGTGAGTAGTGGATCCAGATCTGTCGGTTGTAACTAGCTTAACGTTCGCTGCTAACGTTAACCGCTCAAGCTAAGGAGCTTGCTAGCAAAGTGATACACGAGTATCGGCAAAACAAGCAACGATCAAAAGTTCCAGTGAAGTCAAAATGAGTGCTCCCTCCTCCCAAAAAGTTGTGCTGAAAAGCACCACCAAGCAGTCCCTGAATGAGCGCTTCACTACCATGCTGAAGAACAAGGCGCCGACAGCGGTGAGTGTACGAGCTACCATGCAGCAGCAACACATGGCCAGTGCCCGCAACCGCCGCCTCGCCCAGCAAATGGAGAACAGGCCCTCTGTGCAGGCTGCTCTGCACCACAAGCAGGTGAGACCAGAGCCTGAAGCAGCGCCTGGGGAAGAGCAACATCCAGGCCAGGCTGGGCCGGCCCATCGGGGCCTTGATGCGGGGGGGTGCTGGCGGCCGGGGATTCGCTGTTGGAGGGATGCGGGGGATGACGAGAGGAGGCCTGCGAGGTCGCGGCAGAGGAGCCCTGAGGGGCGCTATGGCTCTGAGAGGGAATCGCCTTTCCCCAGGCATGGGCCAGATGCGTGGCAGAGGGGGTCCAGGCCGTGTGGCCCTCCGTAGAGGGATGCGTCAAAGAGGTGGTCGTGGAGGTGCCTTTGGCAGAGGAGCTGGAAGAGGAGTGGGAGCCAGGGGACGAGGTGGTCTGCGTGGGCGTGGTGGCTTCGCTGGCAGGGGTGGTGGCCGCGGTCGCGGGGGTGGAAGAGGAGGCCGCGGCAGGGGAGGTGGCCCAGGAATGACCCGCGAGCAGCTGGACAACCAGCTTGACGCCTATATGTCCAAGACCAAGGGCAACCTGGACGCTGAGCTGGACGCGTACATGGCCCAGGCTGACCCAGAGGGCATGGAGTGAACAAGGACCTCCACCGCGAGCGTAGGGACTCCTTCAATAGGCCCACACTGAGACAGTGCTGATAACATGAAAGACGCAGAGAGAAGCTTGTATAGTACTATTACACCAAACAAATGTAATGATAAATGCACTTACGTAAACTCTGTGCACTGTCTCACATTACATGGATAAAATTTGTGATGTGATCACAACCTCTGCTTGAATATAAAACTCACATTCACTGAcgcacatgcatacaaacacacttGTTCTAAAATTGTGGGCCTATGAAGAGAACTGTTCGAAATTGAACTTTTTCCTGAATGTGGACTTGACCATTCTATCAGTATCAGTACAAAGTAGACTCGCACCGGCACAGTTTGAAACCTTTTTCCTGTGTGTGCATGAAGAATGCAAAGATCTTTTAAACTTGAATGGACGACACTGACCGGAGTAGACTTAAAGAACCAACATCATCAACGCTCCTGAAATGCCTGCTTTTTGGACCAGAATCTCTTGGCAGAATCTGTTTTGAAGCTGAATTGGGACTATTACCGAACTTTGTGTCTATGTCCATATGGTTAAAAGTGCTTTAGCTCCATCATGTCTAACTAGCATCCACTTCTTATATTTCGTAAACCTATTTTTTACTGCCATGTTTTTATGTTAGGATTTGTATTTAGTAGTGGATGCTCCTTTTACTGTGTTAGCAGAAGTGTACAAGGACGTGACTCTCGGGTAGAAAAATCAAATGAAAATTACAAGGGGAATTCTAGAAAAATCTTGTGTTTTTATTCTATTTAACGCCACCATCTTAAGCTTTGCTTCTGGAGAATTTAAATATGTTGCTGTCTTTGGTTGAAACTCCCCTAACAGCATTTTATGGATGCTTGTCATACCAAATAAGCAACTACACGAGATGCTAAATATTTCAATCCAAGTTGCAAAGGTGTGCGAGtggtctcttcctccccccctggTGTCAATTGTAAGAATTTGAGATGGTCTATAAAAAAACGGGTTGTTGTACACCACTCATAAAGTGAGTGAAAATGTTTTCAGATTGTGTCCAACTGGATGAAACTAAACTCCAAATGCTATGTAATTCCCTCTCCTTCCAACTGGTTATTGTCATAGAATAGAGAATAAACGTTCATCTTCTTTTAACATA
>XM_021572119.2
TATCTAGCAAGCACAATTGAAGTTGAAGCAAAAATCTTGCCAGCTACCCACCTCACTGAGTGCACATGAAGATCAAGCTGCTGGACAGCTGGTTTCAAGAGGCCAAGCAGTCCCTCTGCAATTGCATCTTTCCCTGAGGGAGTCTCCACAACAGCTAGGGCAGCCATTCCTCTTCCAGAACCAGAAGTGATAACAAGAAACGCAAAGCACGCCAGGAAGTAGCTTTGTGACGTAGCTGTAAAGCCTCTCCATTTTCCGTCGTCAGAGTTCCAGTGAAGTCAAAATGAGTGCTCCCTCCTCCCAAAAAGTTGTGCTGAAAAGCACCACCAAGCAGTCCCTGAATGAGCGCTTCACTACCATGCTGAAGAACAAGGCGCCGACAGCGGTGAGTGTACGAGCTACCATGCAGCAGCAACACATGGCCAGTGCCCGCAACCGCCGCCTCGCCCAGCAAATGGAGAACAGGCCCTCTGTGCAGGCTGCTCTGCACCACAAGCAGAGCCTGAAGCAGCGCCTGGGGAAGAGCAACATCCAGGCCAGGCTGGGCCGGCCCATCGGGGCCTTGATGCGGGGGGGTGCTGGCGGCCGGGGATTCGCTGTTGGAGGGATGCGGGGGATGACGAGAGGAGGCCTGCGAGGTCGCGGCAGAGGAGCCCTGAGGGGCGCTATGGCTCTGAGAGGGAATCGCCTTTCCCCAGGCATGGGCCAGATGCGTGGCAGAGGGGGTCCAGGCCGTGTGGCCCTCCGTAGAGGGATGCGTCAAAGAGGTGGTCGTGGAGGTGCCTTTGGCAGAGGAGCTGGAAGAGGAGTGGGAGCCAGGGGACGAGGTGGTCTGCGTGGGCGTGGTGGCTTCGCTGGCAGGGGTGGTGGCCGCGGTCGCGGGGGTGGAAGAGGAGGCCGCGGCAGGGGAGGTGGCCCAGGAATGACCCGCGAGCAGCTGGACAACCAGCTTGACGCCTATATGTCCAAGACCAAGGGCAACCTGGACGCTGAGCTGGACGCGTACATGGCCCAGGCTGACCCAGAGGGCATGGAGTGAACAAGGACCTCCACCGCGAGCGTAGGGACTCCTTCAATAGGCCCACACTGAGACAGTGCTGATAACATGAAAGACGCAGAGAGAAGCTTGTATAGTACTATTACACCAAACAAATGTAATGATAAATGCACTTACGTAAACTCTGTGCACTGTCTCACATTACATGGATAAAATTTGTGATGTGATCACAACCTCTGCTTGAATATAAAACTCACATTCACTGAcgcacatgcatacaaacacacttGTTCTAAAATTGTGGGCCTATGAAGAGAACTGTTCGAAATTGAACTTTTTCCTGAATGTGGACTTGACCATTCTATCAGTATCAGTACAAAGTAGACTCGCACCGGCACAGTTTGAAACCTTTTTCCTGTGTGTGCATGAAGAATGCAAAGATCTTTTAAACTTGAATGGACGACACTGACCGGAGTAGACTTAAAGAACCAACATCATCAACGCTCCTGAAATGCCTGCTTTTTGGACCAGAATCTCTTGGCAGAATCTGTTTTGAAGCTGAATTGGGACTATTACCGAACTTTGTGTCTATGTCCATATGGTTAAAAGTGCTTTAGCTCCATCATGTCTAACTAGCATCCACTTCTTATATTTCGTAAACCTATTTTTTACTGCCATGTTTTTATGTTAGGATTTGTATTTAGTAGTGGATGCTCCTTTTACTGTGTTAGCAGAAGTGTACAAGGACGTGACTCTCGGGTAGAAAAATCAAATGAAAATTACAAGGGGAATTCTAGAAAAATCTTGTGTTTTTATTCTATTTAACGCCACCATCTTAAGCTTTGCTTCTGGAGAATTTAAATATGTTGCTGTCTTTGGTTGAAACTCCCCTAACAGCATTTTATGGATGCTTGTCATACCAAATAAGCAACTACACGAGATGCTAAATATTTCAATCCAAGTTGCAAAGGTGTGCGAGtggtctcttcctccccccctggTGTCAATTGTAAGAATTTGAGATGGTCTATAAAAAAACGGGTTGTTGTACACCACTCATAAAGTGAGTGAAAATGTTTTCAGATTGTGTCCAACTGGATGAAACTAAACTCCAAATGCTATGTAATTCCCTCTCCTTCCAACTGGTTATTGTCATAGAATAGAGAATAAACGTTCATCTTCTTTTAACATA

Function

NR:

description
PREDICTED: chromatin target of PRMT1 protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952868.1 False 2471 mRNA 0.49 6 42291667 42297509
XM_036952867.1 False 2219 mRNA 0.48 6 42291667 42297516
XR_005037488.1 False 2229 mRNA 0.48 6 42291667 42297516
XM_021572119.2 True 2189 mRNA 0.49 6 42291667 42297772

Neighbor

gene id symbol gene type direction distance location
LOC110496299 LOC106569884 coding downstream 4735 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 23577 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 159448 42105604 ~ 42132219 (-)
LOC100135825 tyr coding downstream 198467 42088179 ~ 42093200 (-)
LOC110496296 LOC106588326 coding downstream 216235 42056387 ~ 42075432 (-)
stom stom coding upstream 142573 42440345 ~ 42451777 (-)
LOC110496307 LOC106588314 coding upstream 241555 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 257952 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 320302 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 490748 42788520 ~ 42804428 (-)
G1550124 NA non-coding downstream 592 42289865 ~ 42291075 (-)
G1550157 NA non-coding downstream 20772 42270280 ~ 42270895 (-)
G1550104 NA non-coding downstream 99523 42191862 ~ 42192144 (-)
G1550073 NA non-coding downstream 122341 42169066 ~ 42169326 (-)
G1550170 NA non-coding upstream 9705 42307477 ~ 42307699 (-)
G1550175 NA non-coding upstream 15979 42313751 ~ 42314044 (-)
G1550178 NA non-coding upstream 20026 42317798 ~ 42318049 (-)
G1550181 NA non-coding upstream 24899 42322671 ~ 42323020 (-)
G1550182 NA non-coding upstream 29666 42327438 ~ 42327775 (-)
LOC110496277 LOC106588347 other downstream 620153 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1383042 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1606026 40640175 ~ 40685641 (-)
G1548367 NA other downstream 1899784 40385970 ~ 40391883 (-)
LOC110496816 LOC106588265 other downstream 2602986 39642841 ~ 39688750 (-)
G1550177 LOC106569881 other upstream 17514 42315286 ~ 42316079 (-)
G1550202 NA other upstream 61376 42359148 ~ 42359628 (-)
LOC118936491 LOC106588302 other upstream 597259 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1333234 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2522991 44820763 ~ 44828808 (-)

Expression


Co-expression Network