stom (stom)


Basic Information

Item Value
gene id stom
gene name stom
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42440345 ~ 42451777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570531.2
AAAGAGAGGAcacgaggagtatgcaattgagatttgGTTAGGACTATTTGGTATCCTTGGGATGTTCCTACCCTAAACCATTACCATTTAAAATGTCAATTTCAATggggtagggacatcccaaggaccTTGAATAGCACGGACCATTGAGATtttcccacagacacacctctatTCCCTTCCCTGATGGACAGATAGTGTAGTCGTCGTGCTGTCATTCAGTCTGTGACctgttgtaacaatgtgttaCCTGGTTCTATTCATTCTCCTCTGCTCTGGAACTCTCCTGTCTATAACGCTCATAGACTACTACCAACACCAAAGaGTGGACATTGCCCTGTTCTCTCAGGATGTGAGAGAGCTGATGGACTGTCCTTGGAGACTCAACCTCACACACAGAGAACTAtacaggaCAGAGTTGTGGTCGTGCTGTAATGCGTCTGATAGGCTGATGGTGACCAGACAGAACACCAATCTGAACCAGAGTCTGTCCTACGAGATACACAGGTGGAAGAAGAGAAAGGTGGATCAAGCACTATGGGAGATGCTGCCTCagaccgTACCCTGGAGTAAAGGTTCGTTGAGTCGTTGTGCCGTGGTGGGAAGTGGAGGAATCCTGCAGAACAGCAGCTGTGGAGCGGAAATAGACAATGCTGACTATGTCATCAGgTTTAACCTGGCTCCTATCAACAAGAGTTGTGACGTGGGAGTGAAAACAGACCTCGTAACAGCCAACCCTAGCCAGATCATTAAAGGgTACACTGACCTCCAGCAGAACCCTGGACACCTGGCAGAAGTCCTGTCATTCTATGGCCACGCCCATCTGCTTCTCCCCGCCTTCTCGTCTGCCTCTGGGACAGCCCCCTGCTTCAAGGTGTACCATGCCCTCCGTAAGGCCCGCCCCCAACAAGAAGTGGTGTTCTTCCACCCAGACTACCTGTTTGAGCTGGGCAGGTTCTGGCGTCACCGTGGGCAGCGAGCCCGACGGCTCTCTACTGGTCTGATGCTGGCCAGCACTGCTTTGGAGATCtgtgaacagGTTCATCTGTACGGCTTCTGGCCCTTCCCTCTGGATCTATCCCACAATTCTTTGCCCCATCATTACTATGACAACGTGGGTCCGAACCGCAAAATGCACGCAATGCCTGAAGAGTTCCTGCTGTTACTACAACTCCACAGCCAGGGGGCGCTACAGCTACATGTTGGACCCTGTACActgacccctacaccctaacctatACAACCTTAGTTACTACAATTCCACAACCAGGGGGCGCTACAGCTACATCCCTGTTGATAGCCCCTTGTGCAGGGCTAGGCAACAGAAGCCTACCACACTGACTTGTATTCACACCCTGATCCCTCAGTCTCTGTGGTGAGACAATACTGTGAACATGATTTGAGATTGAATTTGGACCACAACTTAATAGAGCTAACAGTTTAGAACACGACCTAATTCAGCGTTACCCAAACTTGGCCCTGGGGACctcaaggggtgcacattttggtttttgccctggcactacacagctgatttaaaaataatcaactcatcatcaagctttgattattttaatcagctgtgcACCTCATGAGATACCCaagactgagtttgggaaacgctgactTAACTGTTTTAGAACTAAAAATACCAAATAGTTTGGAACCTGACCTAAATCATGACTGGTCAATTGTTGTTCCTTTACCAGTTTGTTTTGTGTTTCCAGATAAATGTCAGAataaagagatgaagagaga
>NM_001124593.1
ctgttgtaacaatgtgttaCCTGGTTCTATTCATTCTCCTCTGCTCTGGAACTCTCCTGTCTATAACGCTCATAGACTACTACCAACACCAAAGAGATGGGTTCCTGGACTCTGTTCAGAAGGGGTTGCAGTGTAGGAGACTGAGAAAGAGACTGGTGACCATGAGTACTATAAAAAAaGTGGACATTGCCCTGTTCTCTCAGGATGTGAGAGAGCTGATGGACTGTCCTTGGAGACTCAACCTCACACACAGAGAACTAtacaggaCAGAGTTGTGGTCGTGCTGTAATGCGTCTGATAGGCTGATGGTGACCAGACAGAACACCAATCTGAACCAGAGTCTGTCCTACGAGATACACAGGTGGAAGAAGAGAAAGGTGGATCAAGCACTATGGGAGATGCTGCCTCagaccgTACCCTGGAGTAAAGGTTCGTTGAGTCGTTGTGCCGTGGTGGGAAGTGGAGGAATCCTGCAGAACAGCAGCTGTGGAGCGGAAATAGACAATGCTGACTATGTCATCAGgTTTAACCTGGCTCCTATCAACAAGAGTTGTGACGTGGGAGTGAAAACAGACCTCGTAACAGCCAACCCTAGCCAGATCATTAAAGGgTACACTGACCTCCAGCAGAACCCTGGACACCTGGCAGAAGTCCTGTCATTCTATGGCCACGCCCATCTGCTTCTCCCCGCCTTCTCGTCTGCCTCTGGGACAGCCCCCTGCTTCAAGGTGTACCATGCCCTCCGTAAGGCCCGCCCCCAACAAGAAGTGGTGTTCTTCCACCCAGACTACCTGTTTGAGCTGGGCAGGTTCTGGCGTCACCGTGGGCAGCGAGCCCGACGGCTCTCTACTGGTCTGATGCTGGCCAGCACTGCTTTGGAGATCtgtgaacagGTTCATCTGTACGGCTTCTGGCCCTTCCCTCTGGATCTATCCCACAATTCTTTGCCCCATCATTACTATGACAACGTGGGTCCGAACCGCAAAATGCACGCAATGCCTGAAGAGTTCCTGCTGTTACTACAACTCCACAGCCAGGGGGCGCTACAGCTACATGTTGGACCCTGTACActgacccctacaccctaacctatACAACCTTAGTTACTACAATTCCACAACCAGGGGGCGCTACAGCTACATCCCTGTTGATAGCCCCTTGTGCAGGGCTAGGCAACAGAAGCCTACCACACTGACTTGTATTCACACCCTGATCCCTCAGTCTCTGTGGTGAGACAATACTGTGAACATGATTTGAGATTGAATTTGGACCACAACTTAATAGAGCTAACAGTTTAGAACACGACCTAATTCAGCGTTACCCAAACTTGGC

Function

symbol description
stom Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in plasma membrane. Orthologous to human STOM (stomatin).

NR:

description
erythrocyte band 7 integral membrane protein precursor

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570531.2 False 1758 mRNA 0.48 8 42440345 42451777
NM_001124593.1 True 1332 mRNA 0.51 9 42440625 42451547

Neighbor

gene id symbol gene type direction distance location
LOC110496300 LOC106588320 coding downstream 142573 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 153413 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 172255 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 308126 42105604 ~ 42132219 (-)
LOC100135825 tyr coding downstream 347145 42088179 ~ 42093200 (-)
LOC110496307 LOC106588314 coding upstream 87550 42539327 ~ 42542965 (-)
LOC110496309 thap7 coding upstream 103947 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 166297 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 336743 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 407094 42858871 ~ 42866233 (-)
G1550245 NA non-coding downstream 16589 42421247 ~ 42423756 (-)
G1550231 NA non-coding downstream 30844 42408800 ~ 42409501 (-)
G1550201 NA non-coding downstream 82308 42357725 ~ 42358037 (-)
G1550200 NA non-coding downstream 83685 42356386 ~ 42356660 (-)
G1550198 NA non-coding downstream 90140 42349978 ~ 42350205 (-)
G1550233 LOC106588318 non-coding upstream 31817 42483594 ~ 42488418 (-)
G1550234 NA non-coding upstream 48009 42499786 ~ 42501294 (-)
G1550288 NA non-coding upstream 51509 42503286 ~ 42506557 (-)
G1550289 NA non-coding upstream 56818 42508595 ~ 42508853 (-)
G1550202 NA other downstream 80717 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 124266 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 768831 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1531720 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1754704 40640175 ~ 40685641 (-)
LOC118936491 LOC106588302 other upstream 443254 42895031 ~ 43015119 (-)
LOC118940987 NA other upstream 1179229 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2368986 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2595903 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2613357 45065134 ~ 45073340 (-)

Expression


Co-expression Network