LOC110496307 (LOC106588314)


Basic Information

Item Value
gene id LOC110496307
gene name LOC106588314
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42539327 ~ 42542965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572128.2
ttcttacaagctcttaaccaacaatgcagttaagtaagcgtttcactgtaaggtcaacacctgttgtattcggcgcgtgtgacaaatacaatttgatttgattcagatCTGGCCACTCCAGAACAGTCCAGCGTTTCTTCTTGAACCATTCCAGGGTGCCTTTGATATTTGTttggggttgttgtcctgctgaaattgCCATCAACCTTCCAACCGAGACCAAGTGTTTGGACACTGGGTTGAACATTGCACTCCAAAACACCTTCATAATCTGCTGTTTTGCTTATGTACAAGGCCCCAAGCACcagaggcagcaaagcaaccccacagcaTTATCAAACCTTCCCTATGTGTGTAGTTATTTTCTTAATTTGGTTGTTGGTTAACATAGGAAGCCCCCACTGCCGAAGAAGACTCAAGAAAGCCTGATTGAATGCTGGACTGTAGTGGAGTGGCCAGCCAATATTCCAGATCTAAATCCCATCCAAAACCTATGGTAAGAGCTGAAAATAGCAGTTGGAAGAATAAGAGCAGTTTGCTGTGAAGTGGGACAAGTTGCCAGTAGGAAGGTGCAGCAAGCTCATTGATGGTACAAGAAGTGTTTGTCTGCAGTTGGCCAAAGGCTGTAATTTTGTCTGCCAATTGTTTTTCTTTTCTAAATTAGTAGTTTGCAAAAATACAATGGGTTCTAGAATGTTGCAAATCCAAGGTCTGGAGACGAAGTTCTCAATTTCAAACTATTTTTTGAAGAAATGGGGAATTAATTGAGAAGTGCAAGCGTGCCAACTAGTTTGTTACAAAGTTGATTTTTACACGAGGGATAAACAATGTTGCACATGGTTTGGCTTTTGGGGTTTAATTCACCTTTTTGTCTATTTACAATAAATACTTATGTGCATCTTATCTCTATGATTTTGTCATAACTCTGTGAAAATCTTACTGGGCACTACTCAAACAGGACCATGGTAAAGTAGAAATGTCCATAATATTACCACCAGCAGGTGGCATTGGTCATCAGTGTATTGACAATGCATAATGTTGGTTCCCCCATCATGTAGGTTCAAAAAGCTCTATACGTCTTTGTTCTTATGTCTACGGGGTGGGATAACTATTAATTGCAGGTTATTTTAGCATCTACACGCAGTTTTTGCCTTTTTGGTATAGATTGTTCTGTTAATCCCAAAATGATGCTTAATTAATTTGTGTCCATTTAATAACTAAACTCCAAAAACAATGGTGAAGATAAAATCGATACGTTTGAAGGTTAGTAATGTACGTCGTTGAGACGAAGCGCGTTGGCCGCAGACAGGCGCACAGTCCTCATTGGCCCATACTTTTTGTCCATCAGCGAACAGGGCCCGCTTATCCTTTATAAATTGCTAGACCGCACAATCCGAGGGAGTTTACTTTGTGTATCCTACACGTTGAGCAGAGCCACGGAAACCGCTGCGCCCTTTTAACAAATGGTTGTCCAAGTAAACCAGCCAACTCGCCACTACAGCAAAACGATGGAAGGAAGTCAGCAAAAGGTGGAGGCTAATGTCTTACTACTTGGTGCTGAAAGCGTCGGTAAATCTGCTCTCACGGTGCGGTTTCTCACTAGAAGGTTTATCGGCGAATACGGCGATATTGAATCTATCTACAGTCACACTGACCGAATAGAAGGACGGGAGATCAGCTTTAATATCTGGGATTCGCTTTGCCCCCAGAATGGTGAGGTCGAGGGACACATCAGCGACAGACAACTCCAGTGGGCGGATGGTTTCATTCTGGTTTATAGCATATGTGACCGTGCCAGCTTCAACGTGGTGCGGCAACAGGTGCAGCGCATCCAGCAAGCCAAAAGCAAGTTCCCCGGAGCCCATCCCATCATTATCGTGGGCAATAAACGTGACCTCCAGCATCGCCGCACTGTCTCAAGCGAGGAAGGACGCCTCCTCGCTCTTTCCACGGACTGTGGCTTCTTTGAGATCTCTGTAGCGGAAACATACCACGAGGTACAACTGGTATTTCACGAACTGCTCGACCTTATCCGAGAGGCGAGGGCGCTCAAGAAGGGGGCAGCTGGGATCAAGGGTATTGTGAGAAGCATGTCCGCCGTTTTCGGAAGGAAGAGGACTGAGTAGTTCCAATATAGCTGAATACGAGAGACGTTGAGGTGTTACTGTAGTTCTGCATCTAAACAGCCCAGGACTTGTCCGTGCATAAAAAGGATGGTTATGTTTCCATATTGGAATAGGTCCATGCACAGCTCTATGATTTAGGCCTAACTGAACTCAAGCCGGTTGGATTGTTACTCGAATGAGATGATTGACAATCAAATCCTATCAAACTGACAGGATTAAGTACTCTTATTTGTGTCGGAGGTCAGGTGGCCTAAAGTAGCAGAAAAATGCCCTTAAATTGCCAACTTGTTAGATTGCCTTGCAACATGAGATACAATTGCCAACTGTAAAGCAGAAGGGTTCTTGTTTAAATTCCTGGAAGAAGTATTGTGGAGAATCTATGTGCAATAGACAACTTATTTCTCTTCACAAATCTGTATCAGCATGCAGAATGTTCTACAGGTGAGGTCTGCTTGGTCTTATCATTGGCACAATCCCTTGGACTATTGACAGTCTATGCAAGACAGATAAGTGAATGTCTAGCATTATAATGGTGTGAGCATTATAATGGTGTGATCATTACATTTGCTCCCTTAGACTCCAGTAGTTTTGCTGCGTTTCCATCCACGGCACCTACATCAATCACACCTTTAAGGTGTTTTGAAAGGTCAGCCAGTGGGGGACCATTCTCTGTTCATTAATGTCAATACCATCTATTTGTCTGAGAGTGCTGTACATTTCACGTCTTTGAAGAATGCCGAGGCCTACTTGACTTTTTCATAGGGGTGTTAATGCAGTGGACAAACATGTCTATTTCAATAGCCTACTGATTctatcatgtttttttttggtaACTTTTCATGAATTATGACAACTGAAGTCATGTTTGTTATACAAGTCATTACTTTAACTGTACAAAGTTTACATAATACAGAATTTGGTCGTACAATTTCATAataaaatgtgaaatgaatgctTAA

Function

NR:

description
ras-related and estrogen-regulated growth inhibitor-like protein

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572128.2 True 3085 mRNA 0.43 4 42539327 42542965

Neighbor

gene id symbol gene type direction distance location
stom stom coding downstream 87550 42440345 ~ 42451777 (-)
LOC110496300 LOC106588320 coding downstream 241555 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 252395 42279525 ~ 42286932 (-)
LOC110496297 LOC106588322 coding downstream 271237 42145158 ~ 42268090 (-)
LOC110496298 LOC106588323 coding downstream 407108 42105604 ~ 42132219 (-)
LOC110496309 thap7 coding upstream 12759 42555724 ~ 42588918 (-)
LOC110496310 LOC106588521 coding upstream 75109 42618074 ~ 42624506 (-)
LOC110496315 NA coding upstream 245555 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 315906 42858871 ~ 42866233 (-)
LOC118936491 LOC106588302 coding upstream 419011 42895031 ~ 43015119 (-)
G1550289 NA non-coding downstream 30474 42508595 ~ 42508853 (-)
G1550288 NA non-coding downstream 32770 42503286 ~ 42506557 (-)
G1550237 pex11b non-coding downstream 36400 42411727 ~ 42502927 (-)
G1550234 NA non-coding downstream 38033 42499786 ~ 42501294 (-)
G1550233 LOC106588318 non-coding downstream 50909 42483594 ~ 42488418 (-)
G1550417 LOC106588274 non-coding upstream 70730 42613695 ~ 42614584 (-)
G1550421 NA non-coding upstream 81761 42624726 ~ 42625121 (-)
G1550423 NA non-coding upstream 82830 42625795 ~ 42626027 (-)
G1550508 NA non-coding upstream 97278 42640243 ~ 42723707 (-)
G1550202 NA other downstream 179699 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 223248 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 867813 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1630702 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1853686 40640175 ~ 40685641 (-)
LOC118940987 NA other upstream 1088041 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2277798 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2504715 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2522169 45065134 ~ 45073340 (-)

Expression


Co-expression Network