LOC110496310 (LOC106588521)


Basic Information

Item Value
gene id LOC110496310
gene name LOC106588521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42618074 ~ 42624506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572133.2
ACACATCCATTATCATCCAGACGCCAGGGAGTTTGATGGTGAAGGCTGGTGATACAGTGACCTTGAAATGCTATTTGGTTGAGCTTATCACCTACTGCTACTTTGTGATTTGGATGAAAGTTGACCCCAGGAATGGAACACTGACTAAGATTGCAAACTTAAAGATTGATAACAACtctgaggagggagaagggaaacAGGACAAACTATGTTCTGCTTCAATCGCCAACGCAACAGTGAGCGACTCAGGAATGTACTATTGTTCAGCTGTTCAATCCGAAATGATCCACACGGGCAATGGTTCTAGAGTTGTTGTGACAGagagagagagaacacagaacaTCACTGAATCGCCAGCCATCAAACTCCTCTCTCCATCGGACGGTGACGGGTCTGTTGTGTTGACGACTCTATACTACACAGCAGAGTCCTTCATCCCTCTGCTGTGTTTGGTGTTGAAAGTGGTCCCGTCTCAGGTCCATGTGTTCTGGCTCATAGACGGGAGAGAGGACAGTGGACTAACTTCGTCCACTTGGACAGACAACAGTGATTCAGCCACAGAGTTCACTATGAACCAGATTCTAGTCCAGGCAGAGGAGTGGGACAGAGGGGTGCAGTGTACGTGTGTGGTGGAGTTTGAGGGAAATTCTATCAACAAAACCCTGATAAAGCCCAATGATTCCACTGGCATGTGCACAATGGTGCTGTATTGGATATCTGCAGCTGCTCTCCTCACCATTATAGTGGCTGTCACTGTCGCTGTGTGTCGGCACCGTGGACATCCCGTGGTTACTGATGAGGATACAAGACAAAGAGGCACAGGCACAGAGAGCAGGCAGCATCAATCTGGGAGACTCGGAGAAGCTAGAAAGGCAGTTAGATCATCCGTCTCGGAGGTCCAGTATGCGACTTTGGACCACATCCAGTTTGGGAGACGCCCAAATACAATTATCCAATAA

Function

NR:

description
uncharacterized protein LOC109907445

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572133.2 True 959 mRNA 0.48 7 42618074 42624506

Neighbor

gene id symbol gene type direction distance location
LOC110496309 thap7 coding downstream 29156 42555724 ~ 42588918 (-)
LOC110496307 LOC106588314 coding downstream 75109 42539327 ~ 42542965 (-)
stom stom coding downstream 166297 42440345 ~ 42451777 (-)
LOC110496300 LOC106588320 coding downstream 320302 42291667 ~ 42297772 (-)
LOC110496299 LOC106569884 coding downstream 331142 42279525 ~ 42286932 (-)
LOC110496315 NA coding upstream 164014 42788520 ~ 42804428 (-)
LOC110496317 LOC106588307 coding upstream 234365 42858871 ~ 42866233 (-)
LOC118936491 LOC106588302 coding upstream 337470 42895031 ~ 43015119 (-)
LOC110496326 NA coding upstream 370945 42995451 ~ 43005501 (-)
LOC110496330 LOC106588299 coding upstream 604425 43228931 ~ 43258006 (-)
G1550417 LOC106588274 non-coding downstream 3490 42613695 ~ 42614584 (-)
G1550289 NA non-coding downstream 109221 42508595 ~ 42508853 (-)
G1550288 NA non-coding downstream 111517 42503286 ~ 42506557 (-)
G1550234 NA non-coding downstream 116780 42499786 ~ 42501294 (-)
G1550421 NA non-coding upstream 220 42624726 ~ 42625121 (-)
G1550423 NA non-coding upstream 1289 42625795 ~ 42626027 (-)
G1550508 NA non-coding upstream 15737 42640243 ~ 42723707 (-)
G1550519 LOC106588312 non-coding upstream 58807 42683313 ~ 42684859 (-)
G1550556 NA non-coding upstream 76818 42701324 ~ 42747352 (-)
G1550202 NA other downstream 258446 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 301995 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 946560 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1709449 40902519 ~ 40908744 (-)
G1548517 NA other downstream 1932433 40640175 ~ 40685641 (-)
LOC118940987 NA other upstream 1006500 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 2196257 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2423174 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2440628 45065134 ~ 45073340 (-)

Expression


Co-expression Network