LOC110496317 (LOC106588307)


Basic Information

Item Value
gene id LOC110496317
gene name LOC106588307
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 42858871 ~ 42866233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572149.2
TGGAGTTATCACACGATATGAGTAACCACAAAAACTTTCCTGCAACGATTTACCTTGCGCACCTGTCAAACAACTCAACCTTACTCGAGTTTCACATTACGACAAATCTGAAAAACACTTCCTTCTTGCACTGAGCCAATTCCACGTTTTTACTATTTTAATCTTATGGAGCAGCATGCAGCCTAGACGTCGGGTGAATGAATAGAACTTGACCTTATGATAATGAGATTTGGCACCAACTTGTTTTATGGAATATAATTGTAAATCTTGAAACTGAAAAGTAAATAGTCACTTTGCAGGAAGACACACTGGCCAATAATTGCACACACAACACAGCCCAGACAGGAATATCATACAGATAGAGACAGGTGAGAAACAGTGATGTCCGTGCACCTAAATCCAGATGAAGACAGAGCCGGAGGGCCTTCTAAAACCAGTGGGTCTACCGCTGCAGGACCTCAAACACCTGGAACGGAACAACAGGGCCTAGAGCACAGGGGGATGGAAAAAGAGCAGGGGGAAGAGGATGAGAAGCAAGAGGCGAAAAGGGAAACCAGCTCCGCTGCCTTGGAGCCTAGCACTTTGCTGTggctgggagacagagagggggagaaaggaggtgTGGTGTCTGAGAGCGAGGGAGCtgaaggggatgaggaggaggaggaggaggagagggtggcagagaggataggagggagtACAGAGCTTTTGGAGGGACAGGAGAGCCAGCCAGAGAGTGAGCGAAAGGCAAAATGGAGAGAGAGCatgccagagggagagagatggagagatgatgaGTTGGAGGGAGGCCAACGTGAGGAAATGGATGGTTCGCTTGCagatgatgaggaagagggggaggaaggcccAGTGAATTGGATGCCAGAGAAGGTTGCGCAGGTCTTCACTCCGACAGTGATAGTGCGTCCATCTAGCAAACGGGAGGAGTTCCCACTTGAAAATAGCAGGTATGGAGAGATGGATACTGAGAAGAGACCTTTCTTAGAGCCCCAGACACCAACAGCCCCACCAGTACTCTACTACCCACAGTGGACAGAGGAGCCGGACAACTACACACATATGTGTGGTGGTAGTTGTGGGGATGTTCTGAAACTTGGCCTGGGCATTGGTGCTGCAGCTGTTCTCTTCCCTCTACTTGTGTGGGGCGGATATGCCCTTTTGCCCTTTGATGCCCCACCCCTGGACAGCGCCCCTCTCAGGCTGGTGTACACACTGCGCTGCTCCTTCTTTGCTGTCATACCCATTATGCTAGGTGTGCTGGTGCAGGGGTTGGCGCGGCTACGCTACGGCGCCCTAACGCCCCTCTACGAGGCCAAGGTGGGGGAGGAGAGCCGGGAGGTGGCAGTCCACCGGCACTACGTGGGCGActcgctctccctcttcctaCTCTACTTCCTGCAGCTGGCCGTCATGGCCACCTACATCAGCCAGGACCTGCTCAAGATGGTGCCCCTGCTCACCATCGTCTTTGCCTTCGGCAGGCTGATCTACTGGGTGTGTGTGACCCTAGGCAGCAGCGTGAGGGGTTTGGGCTTCGGCCTCTCCTTCCTGCCCATACTGGTCATGTTGGGCGCCAACCTCTACTTTGTGTGCTCGTCAGTCAGTGAAGGGGCTGTCTTTGATGTGGCCCcgcccaccaccaccccacctcccAGGCAGAGTTGGTGGGGctaggaggaagaggagtagaTGCGTCCAATCCTGAAGATTAAATGGACCCCCAGTCCCTAGACACTTAAACCTGAAAGGATTAGATATTACCATGTAACTTATACCTACAGTATCATATGTACACTTTGCCTTCTGATAGATCAGAGGCACGTTCCTTAGGCAAACGTTGTGCAACCTTGCAGATAGCATGTAGCGTAAGGAATACATTTCTGAGATGCAAGTCTGTTATCAACAATATAACACACAAGTTCCTCAGTGTTTTGCCCTACTGAATAATTTGAGTGAATGGTTCAATTGGCACCCACTCATTGTCATGATGTTTGTTTGGAAGGAGTAAGGGAGAAGAATCAAGTTCTTGGATTTCATGTCCTTCATCTGGAACATATTGGATCACATTGAACAATGGTTTATGGAGAGCTGGACAATTCATTAAGATGACGTGGGGCTAGTAACAGTTAGCCACCCCAATGAAGTTACCTGTAGTAGAATGATTGTGATATAAAGTGTCTTATGCCGTACATAAGCCAAAGAGGAATGGACCATCCATAAAATAAGACATGTAaggcctgggttgtgttcattaggcacaaaaCGTTAAAAAAAGATTTTTTTAATGTAGCAAAGGAAAATGagcgtttaaaaaaataattattggACAATCCAGGTTGTTCTTCCCCGTCTGTTTTCCTCCGTTTGTGGCCTAAAACACAACTTTGTGCAGTATATCCTTACTAACTAGAATTGTGTTTTATTCTAATCTCATGGCTTTGGTGAAGGATGGTCCAGAGCTTCACTGGAAGGTTTCATAATGAGCTATGACGACATGACTAGTCGgcactatacagtacatcctgAAGGGGGTGGTCTTCCCCAAGTTATTAAAATGTATGAAGACTTAAGTGCCAACATTGAAGTATGAACCTAGGGCGGAGTTGACTTTTTTGAATGCGTATAACATAAAATCCATGTggatattttattatttcttcAACTGTGCCATGTTTACATGTATTTCCTTTCTACAATAGTACAGCATTTACTACCACAATGAATGGGAATGAAGAATATGTTAATTGATAGCTATTTAAGAATGTGTTATGTTAATTATGTCTGTACAGTACCATAACCAATGCACATACATTGTCCTGTTTGTATATGGAAGACAGCTCATAATTGTTGTATTTCTTTTGGGCATTATCTTTCAATGTTTACACTATCTTAATGGAATGATGTGATTCACATAATAAAGTAGCTACTAATCTTG

Function

NR:

description
transmembrane protein 79-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572149.2 True 2959 mRNA 0.47 5 42858871 42866233

Neighbor

gene id symbol gene type direction distance location
LOC110496315 NA coding downstream 54443 42788520 ~ 42804428 (-)
LOC110496310 LOC106588521 coding downstream 234365 42618074 ~ 42624506 (-)
LOC110496309 thap7 coding downstream 269953 42555724 ~ 42588918 (-)
LOC110496307 LOC106588314 coding downstream 315906 42539327 ~ 42542965 (-)
stom stom coding downstream 407094 42440345 ~ 42451777 (-)
LOC118936491 LOC106588302 coding upstream 95743 42895031 ~ 43015119 (-)
LOC110496326 NA coding upstream 129218 42995451 ~ 43005501 (-)
LOC110496330 LOC106588299 coding upstream 362698 43228931 ~ 43258006 (-)
LOC110496334 NA coding upstream 617188 43483421 ~ 43517409 (-)
LOC110496332 LOC106588296 coding upstream 652189 43518422 ~ 43539103 (-)
G1550769 NA non-coding downstream 2922 42855711 ~ 42855949 (-)
G1550738 NA non-coding downstream 44537 42814132 ~ 42814334 (-)
G1550596 NA non-coding downstream 77121 42781475 ~ 42781750 (-)
G1550595 NA non-coding downstream 77515 42780996 ~ 42781356 (-)
G1550790 NA non-coding upstream 29858 42896091 ~ 42963338 (-)
G1550750 LOC106588302 non-coding upstream 33671 42899904 ~ 42933030 (-)
G1550793 NA non-coding upstream 39195 42905428 ~ 42938066 (-)
G1550800 NA non-coding upstream 76828 42943061 ~ 42953940 (-)
G1550861 NA non-coding upstream 219551 43085784 ~ 43086352 (-)
G1550202 NA other downstream 499243 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 542792 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1187357 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 1950246 40902519 ~ 40908744 (-)
G1548517 NA other downstream 2173230 40640175 ~ 40685641 (-)
LOC118940987 NA other upstream 764773 43624763 ~ 43668196 (-)
G1552768 LOC106588550 other upstream 1954530 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 2181447 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 2198901 45065134 ~ 45073340 (-)

Expression


Co-expression Network