LOC110496330 (LOC106588299)


Basic Information

Item Value
gene id LOC110496330
gene name LOC106588299
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43228931 ~ 43258006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572155.2
CGATGTGTCTGTCTATCAGTTGAGCCTGTCTGATCAGTCGCGCATCCCCGGTACATATTTCTCACTGCGGAGACGAGACTCCAGCTTCACTATGtggagtttaaaaaaataagcaaTAAATCCACATTCGTATCGGTTCATGGAGTAGCTGTTGGCGTTTCGTTTGTTTATGAAAAGTCTTTGGAGCGGTAATACATCAACTGTCCACATGAAAGCCGAAAGGGCATCGTTTTTGTGAGCTTCGTCGGAATAGGCTATCCGAGCCTAGCTGTGGGTGTTTAGTTTGCGCGAGGAGACGGAGAGTAGCCTATTGGCGGCATAGCCATTTGATCTGTAATGCGGTGGTGATATGACTGACACGGACTGATTGACATAACCCTCTAATGCCAATCTCCTTCTATCCCATGTTGTGTCTACTTGCAGAGATTGAACCACGGAACAGCACCTGTGCGGAAATACAGTTTGGAACGTTCTCCATCGCCGTGGAAGTTTGATACATTGAAAGACTTTTACTTTCAACGCGAAAATCTGTTATAAAGTATCGTTCCCGGGGTTGGAATCCTTGTTTTTTAATGGAAGCTCCGCGGACTGAATAAGCTTTTGGCGGCTGTCCATGTTCTCCACTGCTAGACTGAAACCTAAAACAGAGGTCTTATAAAAACTGTTTTCAACTCAACATTTCCAGAGAAACATCATTTTGTTGAGAGACAGGCTATTTGTTTCTTCACATTTGACAAACATTCGCtgaaagatgtttttttttttttttaaataatacttTCACTGACGTTTAGACTTCCTTTGCCAGTCAAAAGAACGGGAATCTAAATTTCTATTCCGATTCTATTGAAGAGAAGGACAAAACTACGTTATTTTGTTTGGTTTCCTCTTGGGTCGTCTTTTATTTTGGTCTCTGCATGAAAGTCAAGCGGAAAGTCTACCAGCAGCATGCCGAGGAGAAAGCAGCAAGCGCCAAGGCGGTCCGTAGCTTATGGGGACGAGGACGAATTTAAGGCTGATGACAAGATCGATGAGGAGCACCTGCAAGATGATGGTCTCTCCTTGGATGGACAGGATGGCGAGTACCTCTGCAACGAGGATGACGATGCCGGGGACCAATTCAGCTTCCAGAACTCCCCGTTCAGCAATGGCACCAACCCCGACGCTGGCTACGCTTCTCCTCTCAGCGACACCAGCGACCAACTTATCGACTTCCAGAGCACACGCTCCAAGGACGGACTGGATAAGGAGGAGGCAGCCAGAGGAGGAGTAGACCACCTAAAGATCCCCAATGGCCTGTCTCTGCAGGACAGCCTGGCGCAGATGAAAGCTGTCTATGCAAACCTGATCTCGGACGCCTCTTGGTCCAGCATCACCAAGGACATGCTAAGAagtaacagcaacagcaacaaggTCATCAGTGTGATCAGCAACAGCAATGGAAGCAGCCACAAGGGGAGCAACGGTATCGCCAACAGTAATACTATCAGACTTGTGAACAATAATAACCACAccaacagcagcagtaacacctctgcccctaccaacactaccagcAACACTACCGCTACAAGCACCGCTAACACTAACAACAATGGCACTGGTGTCAGCACTGGCAGCACCGGTGGAGTGACCTACGACTGGCACCAAGCGGCTTTGGCCAAAACCCTGCAGCATACACCATATAATCTCCTCCCCGAGCCGAGCCTCTTCAGCACTGTGCAGCTGTACCGGCAGAACAACAAGCTCTACGGTCCGGTGTTCACCGGTGCCAGCAAGTTCCGGTGCAAGGACTGCAGCGGAGCCTATGACACGCTGGTTGGGCTCACTGTACACATGAATGAGTCAGGCCACTACCGTGATGACAAcaaggacaaggaggaggagcgGGGAAAGAGGTGGTCCAAGCCACGTAAACGCTCCCTCATGGAGATGGAAGGCAAGGAGGACGCTCAAAAGGTTCTCAAGTGCATGTACTGCGGCCATTCCTTTGAATCCCTACAGGACCTGAGTGTCCACATGATCAAAACAAAACACTACCAGAAAGTGCCTCTCAAAGAACCCATGCCAGCTCTCACCTCAAAGCTGGTGCCACCTACCAGAAAAAGAGCATTTCAGGACTTGGTGTCCCCGTGCTCACCAGAGTCTGTCACACCTGGTGTACACCTGGGGGAGACCACGAAAGACCAGAAAGTGGTTAACCCCTATGTCACAGCGAATAACCGCTACGGCTACCAAAATGGCGCCAGTTACACCTGGCAGTTTGAGGCTCGCAAGGCCCAGATCCTCAAATGCATGGAGTGCGGGAGTTCCCACGACACCCTGCAACAACTGACAGCCCACATGATGGTCACAGGACACTTTTTGAAAGTGACCAACACAGCATCCAAAAAGGGGAAGCAGCTGGTGTTTGACCCCCTGGTTGAGGAAAAGATGCAGTCCATTCCTCTCCCGCCGACCTCTACACGACTCCCTGCGCCCAATGTGAAGTCACAGCCCGATTCTCTTCTCCTGCACTCCTCGCACACTGAAGAGAAAAGGGAGGAACACGAGGAGAAAATGGAGATGAGTGAACCAGAGAATAAGAtcaaagaagagaaagaggatcTGACTGAGAAAAGTGAGAAAACTGGCAAGGCTGGACATTACAAGTATCTCACAGAGGAAGACCTGGAAGAGACTCCCAAAGGAGGTCTGGATATCCTGAAGTCCTTAGAGTTCACAGTGTCAAGTGCAATCAGCAAGGCCCAGACTGGGACGCCCACCTGGGGTGGTGCTGGCTACCCTAGCATCCACGCTGCCTACCAGCTCCATGGGTCTCTGAAGTCCTCCATGCAGAGTGTCCAGGTGGTTCAACCCTTGTTCAGCACTAGCAGCTTGAAGGTGATGTCCTCTGACTCCAGCAATCTGATCCATTCACCAATCAGCCATTCCCCACCTCCAAGCCACAAGAACAATGTGCTGGCCATGGAGGAGCTGGTGGAAAAAGTCACAGGGAAGGTCTCTGTGAAGAAGGAGAAGGACGAGAAGGCGTCAGAAAACAAATGCAAAGTGAGCTCTACCAAGTCACCGTCCCCACTGTCCAAGGAGAGGAAGGGGTCACCCATGCCGGATAGCCTCAACAAGCCGGTGAAAAACATTGATGTAGAAGATAAGAGCGAGCCtagaagcagagagggagaggcaaaAGACGGCAAAGCGGATCCGCCAATGAAGAACGGAGCAGATGTGCCAAAAACGGTAGCCAGCAATGGCTGTAACGGCTTGGGAATCATCACGGATCATTCACCTGAGCAGTCGTTTGTCAACCCCCTCAGTGCGTTGCAGTCCATCATGAACAATCACTTGGGAAAGGCCTCGAAGACAGCCACCCCCTTTCTAGACCCTCTGGCAATGCTGTACAAGATCAGTAACAACATGATGGAGAAGCCCATGAACAACTCCAATCAGGTCAAGCAAGTTGAGTCAATCAATCGATTCTATGACAATGATGACCAACCCATGGACTTGACAAAATCCAAAAACACAAATGGACGCACTGCTAACAGCACCTCCACTACGCCGAACAACAATAGCAACTGTAATACCAATAACAGCAACAGGCCTATTCTCTCAAGCTTGTCTGAATCTCTCTCGTCCCCTTTACGGGAAAATGCTTTGATGGACATCTCCGACATGGTCAAGAACCTGACCGGCCGTCTGACACCGAAatcctccaccccatcctccATCTCTGAGAAATCTGACGCGGACAACAGCGCCTTCGAGGAAGGCTTGGAGGAGCTCTCTGCATTCCAGAAAAGGAAAGGCCGGCAGTCCAACTGGAATCCTCAGCACCTCCTCATCCTTCAGGCCCAGTTCACCTCCTGTCTCCGGGAGACGGCTGACGGCAAGTTCGTCATGACTGACTTAGGCCCCCAGGAGCGGGTCCATATCTGCAAGTTCACTGGTCTCTCCATGACCACGATCTCCCATTGGCTGGCCAATGTCAAGTACCAGCTGAGGCGGACAGGCGGGACAAAATTCCTGAAAAACATTGACTCGGGCCATCCCCTGTTTCTCTGCAGTGACTGTGCCTCTCAGTTTAGGACTCCTTCCTCTTACATAAATCATTTGGAGTCCCACTTAGGCTTCAGCATGAAGGACATCTCAAAGCTTTCCATAGATCACCTTAGAGAGCAGCAGGCAGTTACCAGAATGATAACGGAGAAAACGTTCAGTTCCCTGGGACTTAATGAGGAAGACTCATGCTCTGTATTTCAGTGCAAGCTGTGCAATCGGACCTTTGTCAGCAAGCATGCAGTCAAACTGCACCTTAGCAAAACGCATGGCAAGTCTCCGGAGGACCACCTCATCTTTGTCACTGAACTAGAAAAGTTTGATAAAGCATAAATGAGCTGGACAAAAGCTGATGATATGACTGATTACTGAACCGTTGCACTATATCTCAATACTGCACTGCATCTTAACTGAGACTTTGGAATCAGTCCGAAGTAACTGCTGTCATAAAACTGGGCCATGTTCTGTTTtggattttatttaatttttaaattGAACACACATTTTTGCAGATTATTTATATGATCTTTTTTCTGTGCATGTTTTTCAGTGAATTAAAgagatactttgggattttggcaatgaggctacttacctacttccccagagtccgatgaacttgtggataccatatTTATGCTTCTGTGTCCAGTATGGAGGAAGTTTGAGGTAGTTTTCGAGCCAATGCTAcctagtgttagcgcaatgactggaagtctgtgagtatctgctagcatgctagttcatctgactctggggaagtacactgaacaaaaatatgaacgcgacatgtaaagtgttggtcccatgtttcatg

Function

NR:

description
teashirt homolog 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09236 TSHZ; teashirt

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572155.2 True 4876 mRNA 0.49 2 43228931 43258006

Neighbor

gene id symbol gene type direction distance location
LOC110496326 NA coding downstream 223430 42995451 ~ 43005501 (-)
LOC118936491 LOC106588302 coding downstream 262915 42895031 ~ 43015119 (-)
LOC110496317 LOC106588307 coding downstream 362698 42858871 ~ 42866233 (-)
LOC110496315 NA coding downstream 424503 42788520 ~ 42804428 (-)
LOC110496310 LOC106588521 coding downstream 604425 42618074 ~ 42624506 (-)
LOC110496334 NA coding upstream 225415 43483421 ~ 43517409 (-)
LOC110496332 LOC106588296 coding upstream 260416 43518422 ~ 43539103 (-)
LOC110496335 LOC106588256 coding upstream 296029 43554035 ~ 43560458 (-)
LOC118940978 NA coding upstream 303781 43561787 ~ 43566641 (-)
LOC118940979 NA coding upstream 309304 43567310 ~ 43571558 (-)
G1551087 LOC106562846 non-coding downstream 82587 43145762 ~ 43146344 (-)
G1551071 NA non-coding downstream 107990 43120322 ~ 43120941 (-)
G1550866 NA non-coding downstream 135636 43093093 ~ 43093295 (-)
G1550861 NA non-coding downstream 142579 43085784 ~ 43086352 (-)
G1550790 NA non-coding downstream 265593 42896091 ~ 42963338 (-)
G1551599 NA non-coding upstream 339433 43597439 ~ 43598917 (-)
LOC118940987 NA non-coding upstream 372275 43624763 ~ 43668196 (-)
G1551623 NA non-coding upstream 416634 43674640 ~ 43706492 (-)
G1551725 NA non-coding upstream 653027 43911033 ~ 43911239 (-)
G1551892 NA non-coding upstream 728523 43986529 ~ 43986759 (-)
G1550202 NA other downstream 869303 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 912852 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1557417 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 2320306 40902519 ~ 40908744 (-)
G1552768 LOC106588550 other upstream 1562757 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1789674 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1807128 45065134 ~ 45073340 (-)
G1553544 NA other upstream 2409355 45667361 ~ 45667740 (-)

Expression


Co-expression Network