LOC110496334


Basic Information

Item Value
gene id LOC110496334
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43483421 ~ 43517409 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037490.1
ATGGTCTAGAACCGCCACTAGTGGGATCTTCCACAGCCCAGAGGTGCAGAAATCGTACTGCCAGAGGAGTTGGGGAGATCAGAATGGGCATTCTGTTTCATGTTGGTATTGTCAAGTGCTAGCCCGTCTCAAGATCCAACCTGacaccagggttgtgttcattaggcaccaaatggaagaacaTCAACTGAAATGCGAAGATTTTTGTTACCCACGGTCTTCACAAATGGTTGGATACAGACATTGATAATTTGAGAACGATTCCTGGCTGGATTTCCACAGTGTTCCAGTTATCTCCCAACGGATCCAGGAACTCCGGCCGCTCTCGCGCtcactctcgctttctctctcgctctgtggcTGAGATGAAGCCTTGGAGACACTGGCCAGATCAGATaacttgcgcacacacacacacacacacacacacacacacacacacacacacacactacgagaACCTATTCAAATCAGTGTGTAGTGGATGAATAGTATCAGATAGACATGTTAACACTGATAACCCtgcagacaaacaaacacaaaaagcTGGCCTAGCAGAATATCAGGGACTTATTTTAGCAACATGCAAATAAGATGAACAAATTATTTATTTAGTGATTATATTTTAAAGATCGAAAAACAGAAGCCTCAgtactatttctattttttaaaCCATATTCGTGATATTAAAAAACGAATTGAATaaaaaaatgttaaatatatatatttgctgTAAAGTCATAAGAGGGTATTTATAGCACATTTGTCTGAAATGAATTATTAGTTGTTAACATTAttgttactattattgttattatcttgagtaaaaaaacacattttaatactggtagtagcagcaacatttcaAAGCTTTACACATTTGAAAATCAGACTCGCGTTTGCCTAATTTCTTTAATCACAGATATTAAAACCTCCGAAGGAATCACACTCATAAATTATTCCTTGCAATCGCATAAACCTACCTCAGCAAGGGCTCGTCCCAGTATGACAGAAAGCTTTCCCCCCTCTTACTCTCTTTTGCTCCTTCTCTCTCAGATCAATGTGGGATTAAGGGTGATTACATGCACACCCTTTGGGACACTTTATTCCAATGAATTAGCCGAGTGAATGAGCAGCCGCACCGCGACAGAAGAGTATTTTGTACCAGGCCATATAAATTATGCATATTCCGTAGATATTAACCTCGCCTGATCATCTTTTTATCATTAGAATattgagaggggggagaagggattATTAATTGCCCTCATTGTGTAGTTGTCTTCCCTAAACTGCTCTGGTACAGTATGTGGCCAATGAGAGCTATTAATTGGTGTTTTCTTTATTTGATGGTAGGACGATATTTCATGAAATACTGTATAAGCACTCAAATAAACGACATACACATCATAACAATTTGTACTATATATATGATAACTTTTGATTACTATGATCCGATGTATATATATGTCGTAGAATTGACTTGCATTTCTTACCCAGTGAAAGATTATTTCATGACGGTTTATTTTTCGTTCTTTTTTTTTATTAACGTTTACACAACAAAAGGAATTGGTGAAATGGCCTCTAAGGCCGTGTCTACAGACGGAGGACACATTTCCCCGATGTTGTTGACCAAAAACACTGGTAGATGTCAGCCTCTCTTTATTATGATATTTTGAGATTTGCCTGTATTTTTGTCATTGGAGAGCACATACATCGTGTCAACTCAAATGAAGCAATGTGGCAAACGGGGAAATCTTCACTGTTAGgttggggaagaggagggaggtaaCATTGGATGTGAGTGTGGGAAGGTGGGGGACAGTTTTTGCATCACAGAATAGAATCTCCTCAACCCCTATGATTGACGTTGTCATGCAGGAGTGTCACGATGACTAAAGTGTTGGGCTACAGTTCTAAGTCCTCTTTATTTAAATAGAGCAGGAGTGAAAGGTATTGCGGAgagagtgggggaaaaaagtagtCCCCCTTTAGACTCAGGCATTgaagagaaaaacacacacacacccacacacgcacaccttcTTCACACTATTTTTTGTCTGGACACCCTGGTAAAATGATGATGCTTTGAGGATGTAATTAGGCATTTCGTTCAAAGAATATGCCCGCAGATCCTTGAATTATTACCGTCGTTAAAATCGTGCAAATATGGAAATATGATTGCCAGGAGCGCATAAATCAATGATCAGCATGCCCTGAAAATCCAATAAATATGAGAGGTTGGAATACTTACAAATGCTAATTGCATGCAAGGATTTGCATATGGCAGTATTTAAAAGCAATGTCCTTGCCGAAAGAGCCTTTATGGGTAGACAAAGAAGGGATTGTGATTAGATAGACACCCACTCGTGATTTTATCAAACCGACACCGGTCCAGTCACAATTACTGTAAACAGTAGCCTACTCAAGGGGTTGCTGCACATGACGTACTTAGTAAGAAATACAGAAAGTATCTTAGGGTGTTGCAAACAAGTCTATGTTTATTATCCAGTTTCCTCCGTCTGTCCTGTCTTTTTACAATGGGATAAATTGAAGTGACTTTGAATAATGCGCTATGACCTCATGGTGATTACAGCTTATGAAACAAACCTTAATTGAGGTTATTGATTTATATTAAAAGGCATATGCTTTTTGCTTTGAACAAAACAGCTTCTCCTTTTGAAATGTGTTATTAATGCATGCATATtacactgagtctacaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037490.1 True 2730 mRNA 0.39 3 43483421 43517409

Neighbor

gene id symbol gene type direction distance location
LOC110496330 LOC106588299 coding downstream 225415 43228931 ~ 43258006 (-)
LOC110496326 NA coding downstream 477920 42995451 ~ 43005501 (-)
LOC118936491 LOC106588302 coding downstream 517405 42895031 ~ 43015119 (-)
LOC110496317 LOC106588307 coding downstream 617188 42858871 ~ 42866233 (-)
LOC110496315 NA coding downstream 678993 42788520 ~ 42804428 (-)
LOC110496332 LOC106588296 coding upstream 1013 43518422 ~ 43539103 (-)
LOC110496335 LOC106588256 coding upstream 36626 43554035 ~ 43560458 (-)
LOC118940978 NA coding upstream 44378 43561787 ~ 43566641 (-)
LOC118940979 NA coding upstream 49901 43567310 ~ 43571558 (-)
LOC118940980 NA coding upstream 54180 43571589 ~ 43576903 (-)
G1551087 LOC106562846 non-coding downstream 337077 43145762 ~ 43146344 (-)
G1551071 NA non-coding downstream 362480 43120322 ~ 43120941 (-)
G1550866 NA non-coding downstream 390126 43093093 ~ 43093295 (-)
G1550861 NA non-coding downstream 397069 43085784 ~ 43086352 (-)
G1550800 NA non-coding downstream 529481 42943061 ~ 42953940 (-)
G1551599 NA non-coding upstream 80030 43597439 ~ 43598917 (-)
LOC118940987 NA non-coding upstream 112872 43624763 ~ 43668196 (-)
G1551623 NA non-coding upstream 157231 43674640 ~ 43706492 (-)
G1551725 NA non-coding upstream 393624 43911033 ~ 43911239 (-)
G1551892 NA non-coding upstream 469120 43986529 ~ 43986759 (-)
G1550202 NA other downstream 1123793 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1167342 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1811907 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 2574796 40902519 ~ 40908744 (-)
G1552768 LOC106588550 other upstream 1303354 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1530271 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1547725 45065134 ~ 45073340 (-)
G1553544 NA other upstream 2149952 45667361 ~ 45667740 (-)

Expression


Co-expression Network