LOC110496335 (LOC106588256)


Basic Information

Item Value
gene id LOC110496335
gene name LOC106588256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43554035 ~ 43560458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572158.2
ctgaagAACTTACAGACatcacaactgtagctcctatgccccccacaattgcaacttcaactgtagcatcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAGCACCTACTACGTCAATCACAACTGGAGGTCCTACTAACATTTTACCTACAACGACAAGCACAACTGAGGCTCCTTCAGACgtcactactgtagctcctttgaACCCCACAATTGCAGCTTCTTcttcaacaactgtagctcccacgatcaCTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTATTTCATCCCCTACTACAACCACAACAGAAGCTCcttctacaacaactgtagcaccAATGACTTTAGGAACAACAGtcccaacaacaactgcagctAATTCCTCAACTGTAGCTCCTTCAATGCCAATaccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGACatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAGCACTTACTACATCAATctcaactgcaggtcctactaccaTTTTGACTCCTGAGACAATCACAACTGAAGCTCCTACAGAAATCACAACTGTAGCTCTTATACTCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCCCAACTGCAGGTACTACTACCATTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGTAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCACCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACATCACTACTGTAGCTCCTATGCCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGGCAATCACAACTGAATCTCCTATAGACatcactactgtagctcctttgaACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACCACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccactacaacaactgtagctcatTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCCTACAACATCTACAACTTCAGCACCCACTACGTCATTCACAACAGCAGGTCCTACTACCATTTTGCCTCcttcgacaaccacaactgtatcacctacgacaaccacaacaacatccactacaacaactgtagctcctacaatGTCAATCTCAACTGCAGGTCCTACCATCAATCTAACTccaacgacaaccacaactgaagctcCTACAGACatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagacGCTTCCACAACCATAGGTGCAGCACCTACTACATCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGGGGCTCCTATAGACatcactactgtagctcctttgaACCCCACAATTGCAACTTCTTCTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGGGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccactacaacaactgtagctccttcaATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCCTACAACATCTACAACTTCAGCACCCACTACGTCATTCACAACAGCAGGTCCTACTACCATTTTGCCTCcttcgacaaccacaactgtatcacctacgacaaccacaacaacatccactacaacaactgtagctcctacaatGTCAATCTCAACTGCAGGTCCTACCATCAATCTAACTccaacgacaaccacaactgaagctcCTACAGACATCACAAGTGTAGCTCCTATGCCCCCCACAATTGCAACTAAAACTACAACTGTAGCATcacctacaacaacaactgcagacGCTTCCACAACCATAGGTGCAGCACCTACTACATCAATcacaactgcaggtcctactaccaTTTTGACTACTAAGACAATCACAACTGAAGCTCCTACAGAAATCACAACTGGAGCTCTTATGACCCCCACAATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACCACAACTGCAGCAGCTCCTATAACAACAATTGTAGCTGCTTCCACAAACAAAACAGCAGCACCTACTACGTCAATcacaactgcaggtcctactaaCATTTTACCTCcttcgacaaccacaactgtatcgcctacgacaaccacaacaacatccacttcaacaactgtagctccaacaATGTCAATTtcaactgcaggtcctactaccattttacctcctacgacaaccacaaccgaAGCTAATACAGAAatcacaactgtagctcctacaacACCAATCACAACTGCAGGTCCTAAAACCATATTAATGACAACCGCCACTGCAACTTCTATTACAACTACAAATGCAGGTCCTTCAACCTCCACAACTGCAGCGCCTATTACAACTAGAACAGCAGCTCCTACAAGTGCAACCACAATTGCACTTCCTACctcgacaaccacaactgcaacATTTACTTCAACTTCTACGGCTTCAGTGGCATCAACTAGatTTGGCACAGTGGTGGTTTTTGTAAGACTAGAGTTCCAGCTCAACACAGCAGTCCCCAGTAAGGATGTCGTCCTTGGTGCCGTCGACAAGAAACTGTCTACACAATTCAGGACCTTCAAAATTCAAAGAAACACTAAAGCCACCCTCCAGAATGCAACTTATATCAAACTTTCAGGTACTTCATTTGCTGTTGATCTTGGTTTCAAAATAACCAATGTATCCATGGAGGAGAGACTGCTTCAAAGTGCTAGAGTCACTTTCACCGATGATACCTACAGCCAGATACAGGATTCAATTAACAGCCTACTGCATGATATTCTCAGTGAACCAAACGGCAAACAATTTGACTTTCCCAAAGCCAAATTTAGTGTTGTTGGCAATCAAATCAGGGCAAACGTGACGTATGTATACAAAGAGAAAGACGTCAACCTCCCTAGTGCCTTTCTAGGGGATGTTTTAAAAGTCTCAGGACCAACAACCACTGTTGCACCAACAACAACTACCTCACCACCTACTACCCTTTTGCTGACCACTCCTTTCAGTACAAGTGACAGAGGTTTTCCTGGCTGGGCTCTGGCTATTATCATCCCCTGTGGCATCGCTATCATTCTGGTACCCCTGTGGATCCTGCTATGTTGCATGCTATGTGGCGGCTGTGCAGCTTTAAGGAGACGCTGGCAACAACACAGAGCTTACAACGTACAGTACACCACAAGAAACGGCATCTTCTGAGGTGACAAGACTATCAAAATAACAGCCAATCATCTATGTCTGCTCATCATCACAACAAATAATATATTTTTCATGTAATCCATACACCATTACTTTTGAGAAGATCAAACACGGACTTGCTTATATTTTTATAACAAAATTGCATTGTTCTTGATAGGGTTAATAGGTCACGTGTTTCCATAATGTACTACTTtttaatattatatagtatttcTCATTTTAGTCAAAGCTACAGCTGAGCTGGTATATTATGCATTTATGTAATTTAATCATTTATATACACAGAAATATTATTTTAGATTTTTGTCATTTCCTCTGCTGATTTAAGCTATTAACTCACTATATTTGAAAGTCTGCAATACAGCACTTGTTTCTTTATCATACAATTTAACACATGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572158.2 True 5217 mRNA 0.44 7 43554035 43560458

Neighbor

gene id symbol gene type direction distance location
LOC110496332 LOC106588296 coding downstream 14932 43518422 ~ 43539103 (-)
LOC110496334 NA coding downstream 36626 43483421 ~ 43517409 (-)
LOC110496330 LOC106588299 coding downstream 296029 43228931 ~ 43258006 (-)
LOC110496326 NA coding downstream 548534 42995451 ~ 43005501 (-)
LOC118936491 LOC106588302 coding downstream 588019 42895031 ~ 43015119 (-)
LOC118940978 NA coding upstream 1329 43561787 ~ 43566641 (-)
LOC118940979 NA coding upstream 6852 43567310 ~ 43571558 (-)
LOC118940980 NA coding upstream 11131 43571589 ~ 43576903 (-)
LOC118940981 NA coding upstream 17199 43577657 ~ 43584921 (-)
LOC118940982 NA coding upstream 24477 43584935 ~ 43595178 (-)
G1551087 LOC106562846 non-coding downstream 407691 43145762 ~ 43146344 (-)
G1551071 NA non-coding downstream 433094 43120322 ~ 43120941 (-)
G1550866 NA non-coding downstream 460740 43093093 ~ 43093295 (-)
G1550861 NA non-coding downstream 467683 43085784 ~ 43086352 (-)
G1550800 NA non-coding downstream 600095 42943061 ~ 42953940 (-)
G1551599 NA non-coding upstream 36981 43597439 ~ 43598917 (-)
LOC118940987 NA non-coding upstream 69823 43624763 ~ 43668196 (-)
G1551623 NA non-coding upstream 114182 43674640 ~ 43706492 (-)
G1551725 NA non-coding upstream 350575 43911033 ~ 43911239 (-)
G1551892 NA non-coding upstream 426071 43986529 ~ 43986759 (-)
G1550202 NA other downstream 1194407 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1237956 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1882521 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 2645410 40902519 ~ 40908744 (-)
G1552768 LOC106588550 other upstream 1260305 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1487222 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1504676 45065134 ~ 45073340 (-)
G1553544 NA other upstream 2106903 45667361 ~ 45667740 (-)

Expression


Co-expression Network