LOC118940980


Basic Information

Item Value
gene id LOC118940980
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43571589 ~ 43576903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951052.1
TCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTATCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGACatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGACAATCAGAACTGAATCTCCTATAGACatcactactgtagctcctttgaACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAATGCAACAGCAGCATCTACTACGTCAATCACAACTGTAGGTCCTACTAACATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTCACAACTGCAGGTGCTACTACCATTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGAAatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAGCACTTACTACATCAATctcaactgcaggtcctactgACATTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGTAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCACCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACATCACTACTGTAGCTCCTATGCCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGACAATCACAACTGAATCTCCTATAGACatcactactgtagctcctttgaACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTATAACAGCAACTGTAGCTGCTTCCATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCGACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaCTACAACAACTGTTGCTCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGAAatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAGCACTTACTACATCAATctcaactgcaggtcctactaccaTTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGTAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCACCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACATCACTACTGTAGCTCCTATGCCCCCCACAATTGCAACTTCAACTACAACTGTAGCATcacctacaacaacaactgcagatgcttccaccaccacaaGTGCAGCACCTACTACATCAATCccaactgcaggtcctactaccaTTTTGACTACTAAGGCAATCACAACTGAATCTCCTATAGACATCACTACTGTAGCTCATTTGAACCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGaagctcctacaacaacaactgtagctgcttcTACATTTACTACTGCATcccctactgcaaccacaacagaagctccttctacaacaactgtagcaccAATGACTTTAGGAACAACAGTCCCAACGACAACTGCAGCTAATTCCTCAACTGTAGCTCCTTCAATGCCAAtcccaactgcagctcctacaacaacaactCTTGCTCATTCAACCTCTACAACTTCAGCACCCACTACTTTATTcacaactgcaggtcctactaccaTTTTACCTCcttcgacaaccacaacaacatccaATACAACAACTGTTGATCCTTCAATGTCAATctcaactgcaggtcctactaccaATTTAACTccaacgacaaccacaactgaagctctTACAGACatcacaactgtagctcctatgcCCCCCACAATTGCAACTTCAACTGCAGCATcacctacaacaacaactgcagatGCTTCCACAACCACAGGTGCAACACTTACTACATCAATctcaactgcaggtcctactaccaTTTTGACTCCTAAGACAATCACAATTGAAGCTCCTACAGAAATCACAACTGTAGCTCTTATACCCCCCACAATTGCAACTTCAACTACAACTGTAGCATCACCTACAACAGCAACTgcagatgcttccaccaccacaagtgcagctcctactacatcAATCCCAACTGCAGGTCCAACTACCATTTTGACTACTAAGACAATCACAACTGAATCTCCTACAGAAATCACAACTGAAGCTCTTATGACCCCCACAATTGCAGCTTCTACTTCAACAACTGTTGCTCCCACGACAACAACTGCAGCAGCTCCTataacaacaactgtagctgcttccATAAACGCAACAGCAGCATCTACTACGTCAATcacaactgcaggtcctactaaCATTTTAACTCCAACGACAAGCACAACTGAGGCTCCTATAGACatcactactgtagctcctttgaaccccacaattgcaacttcttcttcaacaactgtagctccaacgATCACTACAACTGCAGAAGCTCCTACATTTACTACTGCATCCCCTAATGCAACCACAACAGAAGCTCcttctacaacaactAAATCACAACTGTAG

Function

NR:

description
mucin-19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951052.1 True 4573 mRNA 0.45 3 43571589 43576903

Neighbor

gene id symbol gene type direction distance location
LOC118940979 NA coding downstream 31 43567310 ~ 43571558 (-)
LOC118940978 NA coding downstream 4948 43561787 ~ 43566641 (-)
LOC110496335 LOC106588256 coding downstream 11131 43554035 ~ 43560458 (-)
LOC110496332 LOC106588296 coding downstream 32486 43518422 ~ 43539103 (-)
LOC110496334 NA coding downstream 54180 43483421 ~ 43517409 (-)
LOC118940981 NA coding upstream 754 43577657 ~ 43584921 (-)
LOC118940982 NA coding upstream 8032 43584935 ~ 43595178 (-)
LOC118941171 NA coding upstream 18633 43595536 ~ 43596702 (-)
LOC118940983 NA coding upstream 21637 43598540 ~ 43603485 (-)
LOC118940984 NA coding upstream 27421 43604324 ~ 43607758 (-)
G1551087 LOC106562846 non-coding downstream 425245 43145762 ~ 43146344 (-)
G1551071 NA non-coding downstream 450648 43120322 ~ 43120941 (-)
G1550866 NA non-coding downstream 478294 43093093 ~ 43093295 (-)
G1550861 NA non-coding downstream 485237 43085784 ~ 43086352 (-)
G1550800 NA non-coding downstream 617649 42943061 ~ 42953940 (-)
G1551599 NA non-coding upstream 20536 43597439 ~ 43598917 (-)
LOC118940987 NA non-coding upstream 53378 43624763 ~ 43668196 (-)
G1551623 NA non-coding upstream 97737 43674640 ~ 43706492 (-)
G1551725 NA non-coding upstream 334130 43911033 ~ 43911239 (-)
G1551892 NA non-coding upstream 409626 43986529 ~ 43986759 (-)
LOC118936491 LOC106588302 other downstream 556470 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1211961 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1255510 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1900075 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 2662964 40902519 ~ 40908744 (-)
G1552768 LOC106588550 other upstream 1243860 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1470777 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1488231 45065134 ~ 45073340 (-)
G1553544 NA other upstream 2090458 45667361 ~ 45667740 (-)

Expression


Co-expression Network