LOC118940987


Basic Information

Item Value
gene id LOC118940987
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43624763 ~ 43668196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951059.1
atgccttccagaactgagacgagaaccCCAATCGGAGACCATGTCTACcgggagtccatggatccggaagacatgATGCAGCataagctgggccgtctccttggcagaagcacctacgacaaccacaccaAAATCTCCTTTGACAACAACAGCTCCTACGACAACAACAGTAGCTCCTACAACGCCAATaacaactgcaggtcctactaccaATTTAACTCCTACGACAAGCACAAATCTTCTGCCACCACCACTACTGAGGCCCttactgcaaccacaactgaagcttcctctacaacaactactgcagcCCTTACTGGAACCACAACTGAAGCTGATTCTAAAACAActatagcacctacgacaaccacaacaatctCCCCttcgacaactgcagctccaacaactgtagctcctacaacGCCAATTGAAACTGTAGGACCTACCACCATTTGCAGcccctactgcaaccacaacaGAAGCTTCTTCTACAACAGCTGTAGAAACTACGACGACCACAACAACAtcccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGCCACTTCAACAGCAcacctacgacaacatccTCTTCAACAAcggcagctcctactacaacaactgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGAGGCCCttactgcaaccacaactgaagcttcttctacaacaactactgcagcccttactgcaaccacaactgaagcttcttcttctaaaacaactacagcacctacgacaaccacaacaatctCCCcttcaacaactgtagctccaacaACGCCAATCACAACCGAAGGTCCTACTACCATTTtaactcctacgacaaccacaactgtagcacctacagcaaccacaacaacaactgtaGCACCTACAACAAAGACAACAACATCCTTTTCGACATCTGcagctccaacaactgtagctcctacaacGCCAATCAAAACTGCAGGACCTACTACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAGCTAGTATAACAAATGTAGCTCCAACAATCAGTATAACTGCAGCAGCACCAACTGTAGCTGCATCCACAACCACTACTGCAGCCCCTATGGCAACAACAACTCTAGCTACAATAGCAAGCACAACAGCAGCAGCTACGACAACCACTGCCACTTCTATAACATCTACAACAAGTGCAACAGTAACCCCTACGGCAACAACTACAGCTTCTTCTACGACAAAAATTGTAGATCCTGCGACAACCACAAATGATGCAGctactacaacaaccacagctcctaCAACTCCAACTGTAGCTTCTTCCACAAGGACAAGTGCAGcccctactgcaaccacaacaGAAGCTTCTTCTACAACAGCTGTAGAAACTACGACGACCACAACAACAtcccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactgaagctgcttccacaagcactactgcagcccctactgcaaccacaactgaagcttcttctacaacaactatagcacctacgacaacatccccttcaacaactgcagctcctactacaacaactgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGAGGCCCttactgcaaccacaactgaagcatcttctacaacaactactgcagcCTTTAGtgcaaccacaactgaaacaacatcccctttgacaactgcagctcctactacaacaactgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGAGGCCCttactgcaaccacaactgaaggttcttctacaacgacaacatccccttcaacaactgcagctcctactacaacaactgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGAGGCCCttactgcaaccacaactgaaggttcttctacaacaactactTACAACAAATGTAGCTCCAACgatcactacaactgcagcagcaCCAACTGTAGCTGCATCCACAACCACTACTGCAGCCCCTATGGCAACAACAACTCTAGCTACAATAGCAAGCACAACAGTAGctgctacgacaaccactgcCGCTTCTATAAAATCTACAACAAGCGCAACAGTAACCCCTACGGCAACAACTACAGCTTCTTCTACGACAAAAATTctcctactataACCACTGGAGCACCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactgaagctgcttccacaagcactactgcagcccctactgcaaccacaactgaagcttcttctacaacaactatagcacctacgacaacatccccttcaacaactgcagctcctactacaacaactgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGAGGCCCttactgcaaccacaactgaCGGTTCTTCTAAAACAACTACTGCAGCCCTTACTggaaccacaactgaagcttcttctaaAACAACTATAGCACCTACGACAATATCCCCtttgacaactgcagctcctacaacaacaactgaagctgcttccacaagcactacttcctactacaacaaccacagctcctaCAACTCCAACTGTAGCTTCTTCCACAAGGACAAGTGCAGcccctactgcaaccacaacaGAAGCTTCTTCTACAACAGCTGTAGAAACTACGACGACCACAACAACAtcccctacgacaactgcagctcctactacaaccaccGGAGCTCCTACGGCCACTTCAACAGCAGCagctcttacaacaacaactga
>TU1775358
ctgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGAGGCCCttactgcaaccacaactgaagcttcttctacaacaactactgcagcccttactgcaaccacaactgaagcttcttctacaacaactatagcacctacgacaacatcccctttgacaactgcagctcctactacaacaactgtagctgcttccacaaccactactgcaTTACCTATTGCAACCACGACTGCAGCTTCTTCCACAACCACTACTGcatcCCTTACTggaaccacaactgaagcttcttctaaaacaa
>TU1775356
tgcagcCCTTACTGGAACCACAACTGAAGCTGATTCTAAAACAActatagcacctacgacaaccacaacaatctCCCCttcgacaactgcagctccaacaactgtagctcctacaacGCCAATTGAAACTGTAGGACCTACCACCATTGTAAGTCCTACGACAAACACAAATGTAGCTCCTACAGCAACCACAACAGCAACTAGTACAACAACTGGAGCTCCAAtgaccactacaactgcagcagctCAAACAACACCAACTGTAGCTGCATCCACAACCACTATTGTTGCCcctatggcaacaacaactgaagCTGCAATAGCAAGCACAACAGAAGCTGCTACGAAAACCACTGCAgctaatataacatctacaactaCAGCTTCTACTACGACAATAATAGCAGATCCTGCGACCACCACAAATGATGCAGCTACTACGACAACAACAGCTCCTACAACTCCAACTGTAGCTTTTTCCACAAGAACAAGTGCAAcccctactgcaaccacaacAGAAGCTTATTCTACAACAACTGTAGAaactacaactaccacaacaacatcccctacgacaactgcagctcctactacaaccaccGGAGCACCTACGGCCACTTCAACAGCAGCagctcttacaacaacaac

Function

NR:

description
mucin-19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951059.1 False 3030 mRNA 0.48 11 43624763 43668196
TU1775358 False 336 lncRNA 0.47 3 43630281 43630883
TU1775356 True 648 TUCP 0.46 2 43631006 43632877

Neighbor

gene id symbol gene type direction distance location
LOC118940986 NA coding downstream 1940 43614674 ~ 43622823 (-)
LOC118940985 NA coding downstream 14428 43608205 ~ 43610335 (-)
LOC118940984 NA coding downstream 17005 43604324 ~ 43607758 (-)
LOC118940983 NA coding downstream 21278 43598540 ~ 43603485 (-)
LOC118941171 NA coding downstream 28061 43595536 ~ 43596702 (-)
LOC110496830 NA coding upstream 93489 43761685 ~ 43762658 (-)
LOC118940988 NA coding upstream 96927 43765123 ~ 43769387 (-)
LOC118940989 NA coding upstream 104130 43772326 ~ 43780922 (-)
LOC118940990 NA coding upstream 113077 43781273 ~ 43789565 (-)
LOC118940991 NA coding upstream 123079 43791275 ~ 43794053 (-)
G1551599 NA non-coding downstream 25846 43597439 ~ 43598917 (-)
G1551087 LOC106562846 non-coding downstream 478419 43145762 ~ 43146344 (-)
G1551071 NA non-coding downstream 503822 43120322 ~ 43120941 (-)
G1550866 NA non-coding downstream 531468 43093093 ~ 43093295 (-)
G1550861 NA non-coding downstream 538411 43085784 ~ 43086352 (-)
G1551623 NA non-coding upstream 6444 43674640 ~ 43706492 (-)
G1551725 NA non-coding upstream 242837 43911033 ~ 43911239 (-)
G1551892 NA non-coding upstream 318333 43986529 ~ 43986759 (-)
G1551893 NA non-coding upstream 318629 43986825 ~ 43987035 (-)
LOC110496339 mterf1 non-coding upstream 344411 44010012 ~ 44012891 (-)
LOC118936491 LOC106588302 other downstream 609644 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1265135 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1308684 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 1953249 41663436 ~ 41671516 (-)
LOC118941164 LOC106588367 other downstream 2716138 40902519 ~ 40908744 (-)
G1552768 LOC106588550 other upstream 1152567 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1379484 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1396938 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1999165 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 2119903 45788099 ~ 45803048 (-)
LOC118940987 NA other upstream 123 43624763 ~ 43668196 (-)

Expression


Co-expression Network