LOC118940990


Basic Information

Item Value
gene id LOC118940990
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43781273 ~ 43789565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951062.1
accactgcagggcctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaactacagctcctgcaacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacgacaactgcagcacctactacgacaactgtagctcccacaacaactacttctgcagctcctacgacaacctcaACTGCAACACCTtctacaactgcagctcctacaacctCTATGACTGCAGCaactactacgacaaccacaactgcacctTCTtctacaaccacaactgcagatcCTACTACAACATTAGTTATAGTTTCAAGCACTGCAGCAGCTgaacctacaacaactgtaggtcctactacaacaactgtagctcctacaacagctACAACTGCAGCAACTACTACAACTGAAGCCCCGACAACAACCACACCTTCCACGACAGCTACAACTGACGGTCCGACAACAACCACACCTACAACGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctacgacaactgcagctactacaacaactgcagcacctacgacaactgcagctcctgtgacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaactatttctgcagctcctacgacaactgcagctcctgcgacaactgcagttcctacgacaactgcagctactacgacaactgcagcacctacgacaactgcagctactacgacaactgtagctcccacaacaactacacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaACAACTGATGCCCCGACAACAACCACACCTTCCACGACAGCTACAACTGACGGTCCgacaacaaccacaactacaaCGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctatgacaactgcagctactacaacaactgcagcacctacgacaactgcagctcctgcgacaactactactacgacaactgcagcacctacgacaactgcagctcctgcgacaactggagcacctactacgaccactgcagcacctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaactacagctcctgcgacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctactacgaccactgcagggcctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaactacagctcctgcaacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacgacaactgcagcacctactacgacaactgtagctcccacaacaactacttctgcagctcctacgacaacctcaACTGCAACACCTtctacaactgcagctcctacaacctCTATGACTGCAGCaactactacgacaaccacaactgcacctTCTtctacaaccacaactgcagatcCTACTACAACATTAGTTATAGTTTCAAGCACTGCAGCAGCTgaacctacaacaactgtaggtcctactacaacaactgtagctcctacaacagctACAACTGCAGCAACTACTACAACTGAAGCCCCGACAACAACCACACCTTCCACGACAGCTACAACTGACGGTCCGACAACAACCACACCTACAACGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctacgacaactgcagctactacaacaactgcagcaccttcctacgacaactctcctacaatAGCTACAACTGCAGCAACTACTACAACTGATGCCCCGACAACAACCACACCTTCCACGACAGCTACAACTGACGGTCCgacaacaaccacaactacaaCGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctatgacaactgcagctactacaacaactgcagcacctacgacaactgcagctcctgcgacaactagttctgcagctcctacgacaactgcagctcctgcgacaagtgcagttcctacgacaactgcagctactacgacaactgcagcacctacgacaactgcagctcctgcgacaactggagcacctactacgaccactgcagcacctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaactacagctcctgcgacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacgacaactgcagcacctactacgaccacAGCAGCGCCTAatacgacaactgtagctcccacaacaactacttctgcagctcctacgacaacctcaACTGCAACACCTtctacaactgcagctcctacaacctCTATGACTGCAGCAACtaccacgacaaccacaactgcacctactgctacaaccacaactgcagatcCTATTACAACATTAGTTGTAGTTTCAAGCACTGCAGCAGCTGAACCCGCAACAACTactagttctgcagctcctacgacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacaacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaactacttctgcagctcctacgacaacctcaACTGCAACACCTtctacaactgcagctcctacaaccacTATGACTGCAGCaactactacgacaaccacaactgcacctactgctacaaccacaactgcagatcCTACTACAACTACTACAACTGAAGCCCCGACAACAACCACACCTTCCACGACAGCTACAACTGACGGTCCGACAACAACCACATCTACAACGACAGCTACAACTgaagctcctacgaccactacaacgacaactgcagttcctacgacaactgcagctactacaacaactgcagcacctacgacaactgcagctcctgcgacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaataggttctgcagctcctacgacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacaacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacaaccactgcagcacctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaactacagctcctgcgacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaactagttctgcagctcctacgacaactacagctcctgcgacaactgcagttcctacaacaactgcagcacctactacgacaactgcagcacctacgacaactgcagcacctacgacaactggagcacctactacaacaactggagcacctactacgacaactgcagcacctactacgaccactgcagcgcctactacgacaactgtagctcccacaacaactacttctgcagctcctacgacaacctcaACTGCAACACCTtctacaactgcagctcctacaaccacTATGACTGCACTACAACTGACGGTCCgacaacaaccacaactacaaCGACAGCTACAACTGAAGCTCCTACGACAACTACAACGACAACTGCAGTTCCTATGA

Function

NR:

description
mucin-5AC-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951062.1 True 4347 mRNA 0.51 10 43781273 43789565

Neighbor

gene id symbol gene type direction distance location
LOC118940989 NA coding downstream 351 43772326 ~ 43780922 (-)
LOC118940988 NA coding downstream 11886 43765123 ~ 43769387 (-)
LOC110496830 NA coding downstream 18615 43761685 ~ 43762658 (-)
LOC118940987 NA coding downstream 113077 43624763 ~ 43668196 (-)
LOC118940986 NA coding downstream 158450 43614674 ~ 43622823 (-)
LOC118940991 NA coding upstream 1710 43791275 ~ 43794053 (-)
LOC118940992 NA coding upstream 24384 43813949 ~ 43858805 (-)
LOC118940993 NA coding upstream 70798 43860363 ~ 43890563 (-)
LOC118941172 NA coding upstream 132551 43922116 ~ 43926474 (-)
dus3l dus3l coding upstream 162753 43952318 ~ 43973541 (-)
G1551623 NA non-coding downstream 74781 43674640 ~ 43706492 (-)
G1551599 NA non-coding downstream 182356 43597439 ~ 43598917 (-)
G1551087 LOC106562846 non-coding downstream 634929 43145762 ~ 43146344 (-)
G1551071 NA non-coding downstream 660332 43120322 ~ 43120941 (-)
G1551725 NA non-coding upstream 121468 43911033 ~ 43911239 (-)
G1551892 NA non-coding upstream 196964 43986529 ~ 43986759 (-)
G1551893 NA non-coding upstream 197260 43986825 ~ 43987035 (-)
LOC110496339 mterf1 non-coding upstream 223042 44010012 ~ 44012891 (-)
G1551935 NA non-coding upstream 260800 44050365 ~ 44050741 (-)
LOC118936491 LOC106588302 other downstream 766154 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1421645 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1465194 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2109759 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 1031198 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1258115 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1275569 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1877796 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1998534 45788099 ~ 45803048 (-)

Expression


Co-expression Network