dus3l (dus3l)


Basic Information

Item Value
gene id dus3l
gene name dus3l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 43952318 ~ 43973541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572160.2
attcttatctcttttttcttaaaactgcattgttgactCAATGCACAGTTTCCTAGAGATACATCAAGTCAAGCCTGCTACATAAAAGAAATAGAACCAGGCGAAATAGATAGGAGAGTAGTTGCTTTGtaaggtatctctacctgaaattACATGACCTAAGTGTTTGACAGTTGGTTTTAATAATCTAATCAGtactattttttatatatattttttacattatagTATCAATGAATAAATATGCAAGATTGAAGACAACTGAACCTCTAACGGAATTATTTATTTGCCTGGATCCAAATATTTAGAAAATGCGTCACACGGACCGATATAAGGTGTTGCACGGGTCGATTGTCTTGCCGCGGTAGTTAGTTTTGGATTATCAGAGGGAGTTATGGAGACCGAGACAACCCCAAATATACCCACAGAAAGCCATGGGATGAATGGGACTGATAAAGGCAGAGCTGCCATTAAAACCCAGTTTCTCACAACCAAAGAAAAGTTCCATGAGTTACTGGACTCTGGAGGGAAGGGTCCTAACGATGACAAGGCCAGTGACGATGCAGCACCAAAAGAGACAGCAGAAGACTCTCTGGAAGAGCCTCAAGAGAAAAAATTTAAAGTGGACCCGGATGAGCAGGAGAGGACGGAGAAACGGAACAGCAAGCGAATGCGAGGACAGAACAAGTCTAGGCCGCATATGAAACCCACGAGCTACGACAACAGACGACTGTGTCCTTCCATAATTCAGGAGCGTGAGACCAAATGTGTCTACGGCGACAAATGCAAGTTCATCCATGATGTTGCTGAGTACATGGCCTTAAAGCCCGCTGACGTTGGAGAGCACTGCTACCTCTATGACACCTTCGGGAAGTGCCACTACGGCTTGAGCTGCCGATTCGCCCGGGCCCACATCAGCGCTGACCTAAAAAACCTGGCTAACGAGGAGCGTGTGAAAGCCATGGAGGGGAGAACACCCGTGAGGAATAGCCTGGACAAGGACCTGCAGTGGCGCCTCCGCAAGAAGGTGGTCCCCTTTACAGCGTCTGACGCCTACATGAAGACCGTTTTCAAAGGCGGACACAAAGCAGGAGAGGGCTGGAAAAAGGCTGTAACAGCAGAGAACGTTGATAACTGTTGTTCAGCGGTGGTGATCTCTCAGTGTTCTGAAGGGGAGAAACTACAAACAGACAACCAGGGAACTGAGGTTAGCCAGGAGAACCTGGCTCTAGTGAAAACCATTGGGCCGTTGACTGATGCTGATGTTATAAAGTTACGACAATGTGAAAAGAAGCAGGTGGACTTCAAAGACAAGCTGTATCTTGCTCCCTTAACAACGTGTGGAAACCTGCCTTTCCGTCGTATATGCAAACGATTCGGCGCCGACATTACATGTGGAGAGATGGCCATGTGTACCAACCTGCTGCAGGGCCAGTCGTCCGAATGGGCGCTCCTCAAGAGACATGAGAGCGAGGACCTTTTCGGCGTGCAGGTGGAGGGATGCTTTCCTGACACAATGACCAGATGTGCAGAGCTACTCAACAACAAAATCGACGTGGACTTTGTGGACATCAACTCTGGGTGTCCTATTGACCTTGTATACAAGAAGGGCGGAGGATGTGGGCTGATGACGCGCACCAACAAGTTTGAGCAAATCATCCGAGGAATGAACTCTGTTCTGGATGTCCCTTTGACTGTCAAGATTCGTACCGGCGTTCAGGAGAAGGCCAACATCGCACATAAACTCATCCCAGAGATGAAGAAGTGGGGGGTGTCCATGATCACGTTGCATGGCAGGTCCAGGGAACAGCGCTATACTAAGTCAGCTGACTGGGACTACATCAATACCTGCTCCCAACTCGCCAGCCCCATCCCACTCTTTGGTAATGGAGACATTTTGTCTTATTATGACGCCATGAAGGCTAGAGAGACTGAAGTTTCAGGTGTaatgctggcaagGGGCGCGCTCATCAAGCCCTGGGTTTTCACAGAGATCAAGGAGAGGCGGGACTGGGACATCTCGTCCAGCGAGCGGCTGGATGTCCTTAGGGACTTCACCCACTACGGCCTGGAGCACTGGGGCTCGGACACCCAAGGCCTGGAGAAGACCAGGAACTTCTTGCTGGAATGGCTGTCCTTCATGTGCAGGTACATACCAGTTGGGCTGCTGGAACAAGTGCCCCAGAGGATCAACGAGCGACCACCCTACTACATGGGCAGGGACTACCTGGAGTCTCTCATGGCAAGTCAACACGTAGGGGACTGGATCAAGATCAGTGAAATGCTGCTTGGACCTGTACCCAAGAATTTCAACTTTCTGCCCAAGCATAAGGCAAATGCTTACAAATGAATTTTGTGTATGAATGCTCAACAAAATGTTATGAAGGCAAAGCTTTTGTCAATTTTATTTCCATTCAAGTCAGCAGACCTGAATATACCTATTACATGAGTAATACGAGTAATTTAAAAATGACgtaaatgatttatttcaactttgtTTGGAGTGGTGTGTTTCTTTTACTTGGAGATGTATTTGTTTTACCATTGCACcaaataaatactgtatatggaataaaatacatctaaaatacaA

Function

symbol description
dus3l Predicted to enable tRNA dihydrouridine synthase activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DUS3L (dihydrouridine synthase 3 like).

NR:

description
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05544 DUS3; tRNA-dihydrouridine synthase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572160.2 True 2593 mRNA 0.47 16 43952318 43973541

Neighbor

gene id symbol gene type direction distance location
LOC118941172 NA coding downstream 25844 43922116 ~ 43926474 (-)
LOC118940993 NA coding downstream 61755 43860363 ~ 43890563 (-)
LOC118940992 NA coding downstream 93513 43813949 ~ 43858805 (-)
LOC118940991 NA coding downstream 158265 43791275 ~ 43794053 (-)
LOC118940990 NA coding downstream 162753 43781273 ~ 43789565 (-)
LOC110496339 mterf1 coding upstream 36471 44010012 ~ 44012891 (-)
LOC110496341 LOC106588568 coding upstream 185302 44158843 ~ 44165139 (-)
LOC110496342 krit1 coding upstream 196428 44169969 ~ 44183141 (-)
LOC110496343 LOC106588565 coding upstream 212347 44185888 ~ 44188508 (-)
LOC110496344 prcc coding upstream 231878 44205419 ~ 44210089 (-)
G1551725 NA non-coding downstream 41079 43911033 ~ 43911239 (-)
G1551623 NA non-coding downstream 245826 43674640 ~ 43706492 (-)
LOC118940987 NA non-coding downstream 321435 43624763 ~ 43668196 (-)
G1551599 NA non-coding downstream 353401 43597439 ~ 43598917 (-)
G1551087 LOC106562846 non-coding downstream 805974 43145762 ~ 43146344 (-)
G1551892 NA non-coding upstream 12988 43986529 ~ 43986759 (-)
G1551893 NA non-coding upstream 13284 43986825 ~ 43987035 (-)
G1551935 NA non-coding upstream 76824 44050365 ~ 44050741 (-)
G1551962 NA non-coding upstream 114152 44087693 ~ 44093465 (-)
LOC118936491 LOC106588302 other downstream 937199 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1592690 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1636239 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2280804 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 847222 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 1074139 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 1091593 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1693820 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1814558 45788099 ~ 45803048 (-)

Expression


Co-expression Network