trnal-uaa-28


Basic Information

Item Value
gene id trnal-uaa-28
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44258600 ~ 44264051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-uaa-28
ACCAGGATGGCCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTCGAACCCCACTCCTGGTA
>TU1776087
ACTGTTGGAATAAAAATCCAATGAATGCTATCTTCTTGTGGATACCAACCGCATTCCTGGAAAAAACTTTCTTTGGATGTAATCAACCCACCTTTAGGTCATTTCCAATTAGCGTGGATCAAGTCTGAATGAACTGACTATGACAAGATCTTCTACTTTGACTCAGCTCTTGTTAGTCTTTTAGAAACACCtggatgtcagtgtgtttaaggCGTTAGACTCATGATCGAAATTAAAATGTTCTTGTTTGTTCCAAACCTACATCTGGTAGAAAGTTTGATTGGGATGTAATCAAGTTTAATTTACATATTGTCTGGATCAAAGCCAAAAGATCTAACTGTGTGTTCCTTATTCCATTTTGACTGCGCCCTTGATATTGTGTTTATAACACCAGGATGGCCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTCGAACCCCACTCCTGGTATGAGTTCTTCTACCATTTGGATGTAATCAATTGTCCTTTCATTTCTTTGGATGAAAGCTGAAAGAATTGTCTTTGTTCCCGTTATTCCGCCTTCAAGTATTTATCCTTTAAAAACACAAATGATACCTAAGTGGTTATGGTGTTAGAGTCATTATCAACTTAATTATTATTCTTCTTGCTTCGAAACCCCATTCTTGTATTAAGTTTGATTTGCATGTCAACAAGTCTCATTTAGATCTTTTCTGGCTCAAGGCCAAAATAACTGACTGTGTGCTCCTCATTCCAATTTCACTGGGCTCTTGTTTGTACTTTACaccaggatggctgagtggtttaGACTGTTGGAATAAAAATCCAATGAATGCTATCTTCTTGTGGGTACCAACCGCATTCCTGGAAAAAACTTACTTTGGATGTAATCAACCCACCTTTCATTCATTTCCAATTAGCGTGGATCAAATCTGAATGAACTGACTATGACAAGATCATCTACTTTGACTAAGCTCTTGTTAGTCTTTTAGAAACACCtggatgtcagtgtgtttaaggCGTTAGACTCATGATCGAAA
>TU1776086
TGATACCTAAGTGGTTATGGTGTTAGAGTCATTATCAACTTAATTATTATTCTTCTTGCTTCGAAACCCCATTCTTGTATTAAGTTTGATTTGCATGTCAACAAGTCTCATTTAGATCTTGTCTGGCTCAAACCCAAAATAACTGACTGTGTGCTCCTCATTCCAATTTCACTGGGTTCTTGATTGCACTTTACaccaggatggctgagtggtttaGACTGTTGGAATAAAAATCCAATGAATGCTATCTTCTTGTGGATACCAACCGCATTCCTGGAAAAAACTTTCTTTGGATGTAATCAACCCACCTTTAGGTCATTTCCAATTAGCGTGGATCAAGTCTGAATGAACTGACTATGACAAGATCATCTACTTTGACTCAGCTCTTGTTAGTCTTTTAGAAACACCtggatgtcagtgtgtttaaggCGTTAGACTCATGATCGAAATTAAAATGTTCTTGTTTGTTCCAAACCTACATCTGGTAGAAAGTTTGATTGGGATGTAATCAAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-uaa-28 False 83 mRNA 0.53 1 44259169 44259251
TU1776087 False 1041 lncRNA 0.38 2 44258600 44261253
TU1776086 True 515 lncRNA 0.37 2 44260956 44264051

Neighbor

gene id symbol gene type direction distance location
trnal-uaa-27 NA coding downstream 2360 44256727 ~ 44256809 (-)
trnal-uaa-26 NA coding downstream 3180 44255907 ~ 44255989 (-)
trnal-uaa-25 NA coding downstream 3991 44255096 ~ 44255178 (-)
trnal-uaa-24 NA coding downstream 4811 44254276 ~ 44254358 (-)
trnal-uaa-23 NA coding downstream 5622 44253465 ~ 44253547 (-)
trnal-uaa-29 NA coding upstream 728 44259979 ~ 44260061 (-)
trnal-uaa-30 NA coding upstream 1540 44260791 ~ 44260873 (-)
trnal-uaa-31 NA coding upstream 2341 44261592 ~ 44261674 (-)
trnal-uaa-32 NA coding upstream 3292 44262543 ~ 44262625 (-)
trnal-uaa-33 NA coding upstream 4112 44263363 ~ 44263445 (-)
G1552255 NA non-coding downstream 25400 44233524 ~ 44233769 (-)
G1552243 NA non-coding downstream 26180 44229930 ~ 44232989 (-)
G1552245 NA non-coding downstream 47746 44211086 ~ 44211423 (-)
G1552244 NA non-coding downstream 48687 44210247 ~ 44210482 (-)
G1552035 NA non-coding downstream 55941 44202990 ~ 44203228 (-)
trnal-uaa-48 NA non-coding upstream 16354 44275605 ~ 44276650 (-)
G1552331 NA non-coding upstream 124987 44384238 ~ 44384491 (-)
G1552348 NA non-coding upstream 151437 44410688 ~ 44411062 (-)
G1552353 NA non-coding upstream 161432 44420683 ~ 44420951 (-)
G1552358 NA non-coding upstream 168707 44427958 ~ 44428171 (-)
LOC118940987 NA other downstream 626292 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1244050 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1899541 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1943090 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2587655 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 561512 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 788429 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 805883 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1408110 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1528848 45788099 ~ 45803048 (-)
trnal-uaa-34 NA coding upstream 132 44264183 ~ 44264265 (-)
trnal-uaa-35 NA coding upstream 943 44264994 ~ 44265076 (-)
trnal-uaa-36 NA coding upstream 1754 44265805 ~ 44265879 (-)
trnal-uaa-37 NA coding upstream 2557 44266608 ~ 44266690 (-)
trnal-uaa-38 NA coding upstream 4015 44268066 ~ 44268148 (-)

Expression


Co-expression Network