trnal-uaa-48


Basic Information

Item Value
gene id trnal-uaa-48
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44275605 ~ 44276650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-uaa-48
ACCAGGATGGGCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTCGAACCCCACTCCTGGTA
>TU1776096
AATGAATGCTATCTTCTTGTGGATACCAACCGCATTCCTGGAAAAAACTTACTTTGGATGTAATCAACCCACCTTTAATTCATTTCCAATTAGCGTGGATCAAATCTGAATGAACTGACTATGACAAGATCATCTACTTTGACTCAGCTCTTGTTAGTCTTTTAGAAACACCtggatgtcagtgtgtttaaggCGTTAGACTCATGATCGAAATTAAAATGTTCTTGTTTGTTCCAAACCTACATCTGGTAGAAAGTTTGATTGGGATGTAATCAACATATTGTCTGGATCAAAGCCAAAAGATCTAACTGTGTGTTCCTTATTCCATTTTGACTGCGCCCTTGATTTTGTGTTTATAACACCAGGATGGGCgagaggttaaggcgttggacttaaGATCCAATGGACATATGTCCTCGTGGGTTCGAACCCCACTCCTGGTATGAGTTCTTCTATCATTTGGATGTAATCAATTGTCCTTTCactcatttgaaatgtctttggaTGAAAGCTGAAAGAATTGTCTTTGTTCCCGTTATTCCACCTTCAAGTATTTATCCTTTAAAAACACAAATGATACCCAAGTGGTTATGGTGTTAGAGTCATTATCAACTTAATTATTATTCTTCTTGCTTCGAAACCCCATTCTTGTATTAAGTTTGATTTGCATGTCAACAAGTCTCATTTAGATCTTGTCTGGTTCAAAGCCAAAATAACTGACTGTGTGCTCCTCATTCCAATTTCACTGGGTTCTTGATTGCACTTTACaccaggatggctgagtggtttaGACTGTTGGAATAAAAATCCAATGAATGCTATCTTCTTGTGGATACCAACCGCATTCCTGGAAAAAACTTACTTTGGATGTAATCAACCCACCTTTCATTCATTTCCAATTAGCGTGGATCAAATCTGAATGAACTGACTATGACAAGATCATCTACTTTGACTCAGCTCTTGTTAGTCTTTTAGAAACACCtggatgtcagtgtgtttaaggCGTTAGACTCATGATCGAAATTAAAATGTTCTTGTTTGTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-uaa-48 False 83 mRNA 0.53 1 44276208 44276290
TU1776096 True 1046 lncRNA 0.37 1 44275605 44276650

Neighbor

gene id symbol gene type direction distance location
trnal-uaa-47 NA coding downstream 738 44275388 ~ 44275470 (-)
trnal-uaa-46 NA coding downstream 1559 44274567 ~ 44274649 (-)
trnal-uaa-45 NA coding downstream 2328 44273798 ~ 44273880 (-)
trnal-uaa-44 NA coding downstream 3148 44272978 ~ 44273060 (-)
trnal-uaa-43 NA coding downstream 3968 44272158 ~ 44272240 (-)
trnal-uaa-49 NA coding upstream 728 44277018 ~ 44277100 (-)
trnal-uaa-50 NA coding upstream 1538 44277828 ~ 44277910 (-)
trnal-uaa-51 NA coding upstream 2358 44278648 ~ 44278730 (-)
trnal-uaa-52 NA coding upstream 3178 44279468 ~ 44279550 (-)
trnal-uaa-53 NA coding upstream 3988 44280278 ~ 44280360 (-)
trnal-uaa-28 NA non-coding downstream 12157 44258600 ~ 44264051 (-)
G1552255 NA non-coding downstream 42439 44233524 ~ 44233769 (-)
G1552243 NA non-coding downstream 43219 44229930 ~ 44232989 (-)
G1552245 NA non-coding downstream 64785 44211086 ~ 44211423 (-)
G1552244 NA non-coding downstream 65726 44210247 ~ 44210482 (-)
G1552331 NA non-coding upstream 107948 44384238 ~ 44384491 (-)
G1552348 NA non-coding upstream 134398 44410688 ~ 44411062 (-)
G1552353 NA non-coding upstream 144393 44420683 ~ 44420951 (-)
G1552358 NA non-coding upstream 151668 44427958 ~ 44428171 (-)
G1552360 NA non-coding upstream 158190 44434480 ~ 44434739 (-)
LOC118940987 NA other downstream 643331 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1261089 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1916580 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1960129 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2604694 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 544473 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 771390 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 788844 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1391071 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1511809 45788099 ~ 45803048 (-)

Expression


Co-expression Network