LOC110496346


Basic Information

Item Value
gene id LOC110496346
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44298329 ~ 44304476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952913.1
AAACTACATCTCATCATTGAAAACTCCATGCTTGAGAAGTTAAATAATTTGTATCATATATTTGGTTGAATTCGTTTCAATAGCCAGATTTTACCCATCAAGATGGTACTACCTTTAACTAGCCTGTTCAGGATTACACAATGCATCTTAATATTTGCCATCTCAGGTTCCCTGTCAGTGCCCTGCTTAGTCACTCCAGCAGGTATGAGCACCACCCCCACAAAAAAAGCGGTCTTCCAGTTGGGCATGAAGATCACCAACCGAGTCTTCAATGACTCCCTATTGAATCCCAATTCTGAGGACTACAAGAAATTGTATGGCGAGGTCAGCCAATTGCTTGCTGATGCCTACAATTCTCCTACATCCGGAACAGCATCCACTTATGAGGGCGTTGCAACAATGACTTTCAGAAATGGATCAGTGATCGCAAACGCTGACATAGTTTTCAACACAATGTCTATCAATAGATTTGTGGTCCAGTTTGATTTCCTGGATCAAATCAAAGCCAATCCTTCTGCCTCTCTCCAGATAGATACAAATTATGTTGAATGTTCTCCGTCAGTGCCCTACTCAGTCACTCCAGCAGGTATGAGCACCACCCCAACAAACAAAATGGTATTCCAGATGTGCATAAAGATCACCAATCGGGTCTTCAATTACTCCCTATTGAATCCCAAATCCGAGGACTACAAGAAAATGTATGACGAGGTCAGCCAACTGCTTGCTGATGTCTACAAGTCTCCTACATCCGGAACAGCATCCACTTATGAGGGCGTTGCAACAATGACTTTCAGAAATGGATCAGTGATCGCAAACGCTGACATAGTTTTCAACACAATGTCTATGAATAGATTTGTGGTCAAGTTTGATTTCCTGGATCATATCGAAGCCAATCCTTCTGCCTCTCTTCAGATAGATACAAATTATATTGAGTGTAAGACATACAAATATACTAACTGACTGTCCTGGTACTGTACATCTCTATTTTTCCAGGCAAACTCTTGTCTGCAGAACAAGATCTGACAAAGATGAGCTACAAGCAAAACCATGTCACAACCTCTGTAGATACAGTATAGTTTGTCAAGAATTTAGCATGTTATATAGGATGAAAATGATTTGAATGATTTCATATGTTTGTATTTATTCCACAAATCTTGCGCATAAGTTTTGGGCAACCTTGCTAGTATTTTTGTATTGTATCTGATGTCTGTTATATTCAGATTTTTCATTGGCACATATCTCAGATGTTTTGCGTTGCATCATGTTCAACTGCTCAATTGTATAATGCTAAAGATGAATGTTAAATCAAAAATTAAATCAAAGAGTTCCTTAATTGGTCAGTTATTTGAATCGGGAGTTTACAGTAATGATGTATACAAGCCCTGGATTGCTAATggtatgtattggccattgacaGGCTTTGAAGACACCAGTCGGCCATTTTGGCACTctccagtaggagcagtccttcACAAGAGTACAttgaattctacagtatttcaattaaatgtttcaaggacaaaatgacatgtatttaaatatttgtttattgttGGGACAGTAATCTCAAAACTATACTGTAAGGAAacatttttatattatttttatttgaatgtttagctcacataatacaATGTAAAAGTgtgcaatagaatagaataaatgtggcaaaaacaaatgtagaaataaaaaaattctatagcttccaaaataaaataatggTGAGGGAGTGTCAAGATGGAGGCATGGTGGCTTCAATAGAGCCCCCCAAATAGTAAtcatgtgtatatataaatcattggctAACAAGTGCAGTAATAATGTGA
>XM_036952914.1
AAACTACATCTCATCATTGAAAACTCCATGCTTGAGAAGTTAAATAATTTGTATCATATATTTGGTTGAATTCGTTTCAATAGCCAGATTTTACCCATCAAGATGGTACTACCTTTAACTAGCCTGTTCAGGATTACACAATGCATCTTAATATTTGCCATCTCAGGTTCCCTGTCAGTGCCCTGCTTAGTCACTCCAGCAGGTATGAGCACCACCCCCACAAAAAAAGCGGTCTTCCAGTTGGGCATGAAGATCACCAACCGAGTCTTCAATGACTCCCTATTGAATCCCAATTCTGAGGACTACAAGAAATTGTATGGCGAGGTCAGCCAATTGCTTGCTGATGCCTACAATTCTCCTACATCCGGAACAGCATCCACTTATGAGGGCGTTGCAACAATGACTTTCAGAAATGGATCAGTGATCGCAAACGCTGACATAGTTTTCAACACAATGTCTATCAATAGATTTGTGGTCCAGTTTGATTTCCTGGATCAAATCAAAGCCAATCCTTCTGCCTCTCTCCAGATAGATACAAATTATGTTGAATGTTCTCCGTCAGTGCCCTACTCAGTCACTCCAGCAGGTATGAGCACCACCCCAACAAACAAAATGGTATTCCAGATGTGCATAAAGATCACCAATCGGGTCTTCAATTACTCCCTATTGAATCCCAAATCCGAGGACTACAAGAAAATGTATGACGAGGTCAGCCAACTGCTTGCTGATGTCTACAAGTCTCCTACATCCGGAACAGCATCCACTTATGAGGGCGTTGCAACAATGACTTTCAGGCAAACTCTTGTCTGCAGAACAAGATCTGACAAAGATGAGCTACAAGCAAAACCATGTCACAACCTCTGTAGATACAGTATAGTTTGTCAAGAATTTAGCATGTTATATAGGATGAAAATGATTTGAATGATTTCATATGTTTGTATTTATTCCACAAATCTTGCGCATAAGTTTTGGGCAACCTTGCTAGTATTTTTGTATTGTATCTGATGTCTGTTATATTCAGATTTTTCATTGGCACATATCTCAGATGTTTTGCGTTGCATCATGTTCAACTGCTCAATTGTATAATGCTAAAGATGAATGTTAAATCAAAAATTAAATCAAAGAGTTCCTTAATTGGTCAGTTATTTGAATCGGGAGTTTACAGTAATGATGTATACAAGCCCTGGATTGCTAATggtatgtattggccattgacaGGCTTTGAAGACACCAGTCGGCCATTTTGGCACTctccagtaggagcagtccttcACAAGAGTACAttgaattctacagtatttcaattaaatgtttcaaggacaaaatgacatgtatttaaatatttgtttattgttGGGACAGTAATCTCAAAACTATACTGTAAGGAAacatttttatattatttttatttgaatgtttagctcacataatacaATGTAAAAGTgtgcaatagaatagaataaatgtggcaaaaacaaatgtagaaataaaaaaattctatagcttccaaaataaaataatggTGAGGGAGTGTCAAGATGGAGGCATGGTGGCTTCAATAGAGCCCCCCAAATAGTAAtcatgtgtatatataaatcattggctAACAAGTGCAGTAATAATGTGA

Function

NR:

description
uncharacterized protein LOC110496346 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952913.1 False 1826 mRNA 0.38 7 44298329 44304476
XM_036952914.1 True 1627 mRNA 0.38 7 44298329 44304476

Neighbor

gene id symbol gene type direction distance location
trnal-uaa-58 NA coding downstream 13986 44284261 ~ 44284343 (-)
trnal-uaa-57 NA coding downstream 14755 44283492 ~ 44283574 (-)
trnal-uaa-56 NA coding downstream 15519 44282728 ~ 44282810 (-)
trnal-uaa-55 NA coding downstream 16339 44281908 ~ 44281990 (-)
trnal-uaa-54 NA coding downstream 17149 44281098 ~ 44281180 (-)
LOC118936320 LOC106588563 coding upstream 48734 44353210 ~ 44363948 (-)
LOC110496350 rpc7l coding upstream 172720 44477196 ~ 44486727 (-)
LOC110496351 LOC106588560 coding upstream 182793 44487269 ~ 44537143 (-)
LOC110496833 LOC106588558 coding upstream 326290 44630766 ~ 44654925 (-)
si:ch73-109i22.2 LOC106588553 coding upstream 389855 44684653 ~ 44703092 (-)
trnal-uaa-48 NA non-coding downstream 21679 44275605 ~ 44276650 (-)
trnal-uaa-28 NA non-coding downstream 34278 44258600 ~ 44264051 (-)
G1552255 NA non-coding downstream 64560 44233524 ~ 44233769 (-)
G1552243 NA non-coding downstream 65340 44229930 ~ 44232989 (-)
G1552245 NA non-coding downstream 86906 44211086 ~ 44211423 (-)
G1552331 NA non-coding upstream 79762 44384238 ~ 44384491 (-)
G1552348 NA non-coding upstream 106212 44410688 ~ 44411062 (-)
G1552353 NA non-coding upstream 116207 44420683 ~ 44420951 (-)
G1552358 NA non-coding upstream 123482 44427958 ~ 44428171 (-)
G1552360 NA non-coding upstream 130004 44434480 ~ 44434739 (-)
LOC118940987 NA other downstream 665452 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1283210 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1938701 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 1982250 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2626815 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 516287 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 743204 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 760658 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1362885 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1483623 45788099 ~ 45803048 (-)

Expression


Co-expression Network