LOC118936320 (LOC106588563)


Basic Information

Item Value
gene id LOC118936320
gene name LOC106588563
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44353210 ~ 44363948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037493.1
AATCAGAGTTGAGCTGTGATTCACATCACACAATTTCTTTTAGCACGGCCCAGCCTCAGACTCACGCGGCTCCTGTCGAGTCACACCTGACGTAGGTGGCCCCAGATAAAAGACTGGTACCTCACCCTGCAGATGACAAACTACATCTCACCATTAAACTCCATACTTGAGAAGTTAAATCGTTTGTATCATACATTTGGTTTAATTTGTTTAAATAGCCAGATTTTACCCATCAAGATGGTACTACCTTCAGCTAACCATTTGAGGATTACACAATGCATCTTAATATTTGCCATCTCAGGTTCCCTGTGGTCAGTCACTCCAGCAGGTATGAGCACCACCCCAACAACAAAAAAGGTTTTCCAGATGGGCATAAAGATAACCAACCGGGTCTTCAATGACTCCCTATTGAATCCAAATTCTGAGGACTACAAGAAATTGTATGGCGAGGTCAGCCAATTGCTTGCTGATGCCTACAATTCTCCTACATCCGGAACAGCATCCACTTATGAGGGCGTTGCAACAATGACTTTCAGAAATGGATCAGTGATCGCAAACGCTGACATAGTTTTCAACACAATGTCTATCAATGGATTTGTGGTCAAGTTTGATTTCCTGGATCATATCGAAGCCAATCCTTCTGCCTCTCTCCAGATAGATACAAATTATATTCAATCAGAAAATGTTGTGGCTCCAACCTCAACCATAACCACCCCCACCTCAACCATAACCACCCCCACCACACCTACTACAACAATAACTCACATGACTGCAACCACTACTAACCCACCAACAACCACAACATTGGCTCCAAATACAACTATGAAAATTCTTACAACTTCTACCTCATTGGCTCCAAATACAACTGCGACAATTCCAACCACAACCACCCTGTTGGTTACAAATACAACTATGAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTACGAATATTCCTACAAATTCCACTCCATTGGCTCTAACTACTTCTACAAAAATTCCTACAAAATTCACCTCATTGGCTCCAAATATAACTGCGACAATTCCAACCACAACCACCCTGTTGGTTACAAATACAACTATGACAATTCCAACAACTTCCACCACATTGGCTCTAAATAGAACTATTAACATTCCTACAAATTCCACTCCATTGGCTCTAACTACTTCTACAAAAATTCCTACAAAATTCACCTCATTGGCTCCAAATATAACTGCGACAAATACAACTATGAAAATTCCAACAAATTCCACCACATTGGCTCTAAATAAAACTATTAACATTCCTACAAATTCAACTCCATTGGTTCTAACTACTTCTCCGAATATTTCTACAAATTCCACTCCATTGGCTCTAACTACAACTATAAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTCCGAATATTTCTACAAATTCCACTCCATTGGCTCTAACTACAACTATAAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTCCGAATATTTCTACAAATTCCACTCCATTGGCTCTAACTACAACTATAAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTCCGAATATTCCTACAAATTCCACTCCATTGGCTCTAACTACTTCTACAAAAATTCCTACAAAATTCACCTCATTGGCTCCAAATATAACTGCGACAATTCCAACAACCACCCTATTGTCTAAAAATACAACTATGAAAATTCCAGCAACTTCCTCCCCATTGGCTACAAATACAACTATGAAAATTCCAACAAATTCCACCCCACTGGCTCCAGCTACAACTACCCAAATTCCAACAACCCCATTGGcttcaactacaacaacaacatttcTCACAACTTCCATCCCATTGGCTCCATCTACAATTACGAAAGATCCCTCTTTTGGCAAAACCACACATGATCCAATTACCGTAGTAACCTTCTCTTCCACTAAAGGCAGCGGAAAGAGAAACAGTGGTGTACTCCCTACATCCGGTCCTACAAATATGTCATCTTCAATGACAACTGGTGGTTCAGGAGGAAACAACAAGACAATTCATCCACCCACCACAAGTCATGGTGCCAGTCCTTCACCTGGGACGGTGGACCCAGAAAAAAACAGTAAGAGACCAAACATCTCCCCATCTGGTGGTTTAACCAACCATCCCCTGAAGCCTTCCATCGGGCCTCAGTCAAGCACCACAACTAAATCTAGCACAACTGCCAACACAGCATCCAGGGATAATGGTGGTGGGTTCAGTGACTGGGTACCGGGATGGGCCATTGCGCTGTTGGTGTTAGCCGCTGTCATCCTGCTGCTCCTCATTATCATCTTCATCATGATGGTGGTGCGCTGGTGCTGTAAAAGGTCAGATGGTCCGTACGCTCATGAAAAAAAGAGCACCCCCAACATGGACTCTTTCCCCACATATGTCCCCCAAGCCCCTGTACAGGAGCAACCCAATGGCAAGACCTTTGAGACTATTGATGACCCacgaaagaagaaaaaaacaggaATGTACATAGTGAACCCCTGAGCAGGAAGATGTGGAGGTGACATACCAACAGgCAAACTCTTGTCTGCAGAACAAGATCTGACAAAGATGAGCTACAAGCAAAACCATGTCACAACCTCTGTAGATACTGTATAGTTTGTCAGGAATTGAGTATGTTATATTGGATGAAAATTATCGGAATGATTTCATAGGTTTGTATTTATTCCACAAATCTTGCGCATAAGTTTTGGGCAACCTTGCTAGTATTTTTGTATTGTATCTGATGTCGTCATATTTGACCCTGTTATGAACACAACCAGCGTCAAGCTGATATATTTTTTCAGTCTGTTATATTCAGATTTTTCATTGGCACATATCTCAGATGTTTTGCGTTGCATCATGTTCAACTGCTCAATTGTATAATGCTAAAGATGAATGTTAAATCAAATATGAAAATCAGAGTTCCTTAATTGGTCAGATATTTGAATCGGGAGTTTACAGCAATGATGTATATGAGCCCTGGATTGCAGTTGTTATGTGTTTGCCATTGACAGGCATTGAAGCCACTAGTCGGCCATTTTGGCATTCCCCAGTTGGAGCAGTCCTTCATAAGAATacatggaattctacagtatttcaattaaatgtttcagggacaaaatgacatgtatttaaATATTTGTTTGTTGGGACAGTAACATTGGTGATctcaaaaaaatgtatattttatttgtaagtttagctcacataatacaATGTAAAAGTATGCAATAAGGTGTCTGAAATAGAATAGTTGTGGCAAAAAcaaatttagaaaataataaattAATTTCTGTAgcatccaaaatatatttttttacattgagggagtgccaagatggaggcatggTGGCTTCAATAGAGCCGCCAAAACAGTAttctagtgtgtgtatatataaatcattggctTACAACATGTGCAGTAATAATGTGACATCTTGAGAAATGGAAATAGATGTAGGTCTGAATCTTAACTTGACTTGAGTGCCCATTGATGTCAATGGAAGATTTTCAAAAACTCCAGTTACACGCAcagatctcaagttaggatttggGACTTGAGAATTACACGTGTAAATAGGAGTACATTTCTGAGTACTGAGTTTGTATCATGTTATGTACAATTTAATGGAAGACTTGTAAATAAATGTTGAGAATCAAGAACCTCTTCTTCATGGAAGTATCCTCATTAAACTGACAG
>XR_005037492.1
GAGTTGAGCTGTGATTCACATCACACAATTTCTTTTAGCACGGCCCAGCCTCAGACTCACGCGGCTCCTGTCGAGTCACACCTGACGTAGGTGGCCCCAGATAAAAGACTGGTACCTCACCCTGCAGATGACAAACTACATCTCACCATTAAACTCCATACTTGAGAAGTTAAATCGTTTGTATCATACATTTGGTTTAATTTGTTTAAATAGCCAGATTTTACCCATCAAGATGGTACTACCTTCAGCTAACCATTTGAGGATTACACAATGCATCTTAATATTTGCCATCTCAGGTTCCCTGTGGTCAGTCACTCCAGCAGGTATGAGCACCACCCCAACAACAAAAAAGGTTTTCCAGATGGGCATAAAGATAACCAACCGGGTCTTCAATGACTCCCTATTGAATCCAAATTCTGAGGACTACAAGAAATTGTATGGCGAGGTCAGCCAATTGCTTGCTGATGCCTACAATTCTCCTACATCCGGAACAGCATCCACTTATGAGGGCGTTGCAACAATGACTTTCAGAAATGGATCAGTGATCGCAAACGCTGACATAGTTTTCAACACAATGTCTATCAATGGATTTGTGGTCAAGTTTGATTTCCTGGATCATATCGAAGCCAATCCTTCTGCCTCTCTCCAGATAGATACAAATTATATTCAATCAGAAAATGTTGTGGCTCCAACCTCAACCATAACCACCCCCACCTCAACCATAACCACCCCCACCACACCTACTACAACAATAACTCACATGACTGCAACCACTACTAACCCACCAACAACCACAACATTGGCTCCAAATACAACTATGAAAATTCTTACAACTTCTACCTCATTGGCTCCAAATACAACTGCGACAATTCCAACCACAACCACCCTGTTGGTTACAAATACAACTATGAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTACGAATATTCCTACAAATTCCACTCCATTGGCTCTAACTACTTCTACAAAAATTCCTACAAAATTCACCTCATTGGCTCCAAATATAACTGCGACAATTCCAACCACAACCACCCTGTTGGTTACAAATACAACTATGACAATTCCAACAACTTCCACCACATTGGCTCTAAATAGAACTATTAACATTCCTACAAATTCCACTCCATTGGCTCTAACTACTTCTACAAAAATTCCTACAAAATTCACCTCATTGGCTCCAAATATAACTGCGACAAATACAACTATGAAAATTCCAACAAATTCCACCACATTGGCTCTAAATAAAACTATTAACATTCCTACAAATTCAACTCCATTGGTTCTAACTACTTCTCCGAATATTTCTACAAATTCCACTCCATTGGCTCTAACTACAACTATAAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTCCGAATATTTCTACAAATTCCACTCCATTGGCTCTAACTACAACTATAAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTCCGAATATTTCTACAAATTCCACTCCATTGGCTCTAACTACAACTATAAACATTCCTACAAATTCCACTCCATTGGTTCTAACTACTTCTCCGAATATTCCTACAAATTCCACTCCATTGGCTCTAACTACTTCTACAAAAATTCCTACAAAATTCACCTCATTGGCTCCAAATATAACTGCGACAATTCCAACAACCACCCTATTGTCTAAAAATACAACTATGAAAATTCCAGCAACTTCCTCCCCATTGGCTACAAATACAACTATGAAAATTCCAACAAATTCCACCCCACTGGCTCCAGCTACAACTACCCAAATTCCAACAACCCCATTGGcttcaactacaacaacaacatttcTCACAACTTCCATCCCATTGGCTCCATCTACAATTACGAAAGATCCCTCTTTTGGCAAAACCACACATGATCCAATTACCGTAGTAACCTTCTCTTCCACTAAAGGCAGCGGAAAGAGAAACAGTGGTGTACTCCCTACATCCGGTCCTACAAATATGTCATCTTCAATGACAACTGGTGGTTCAGGAGGAAACAACAAGACAATTCATCCACCCACCACAAGTCATGGTGCCAGTCCTTCACCTGGGACGGTGGACCCAGAAAAAAACAGTAAGAGACCAAACATCTCCCCATCTGGTGGTTTAACCAACCATCCCCTGAAGCCTTCCATCGGGCCTCAGTCAAGCACCACAACTAAATCTAGCACAACTGCCAACACAGCATCCAGGGATAATGGTGGTGGGTTCAGTGACTGGGTACCGGGATGGGCCATTGCGCTGTTGGTGTTAGCCGCTGTCATCCTGCTGCTCCTCATTATCATCTTCATCATGATGGTGGTGCGCTGGTGCTGTAAAAGGTCAGATGGTCCGTACGCTCATGAAAAAAAGAGCACCCCCAACATGGACTCTTTCCCCACATATGTCCCCCAAGCCCCTGTACAGGAGCAACCCAATGGCAAGACCTTTGAGACTATTCAGGATGACCCacgaaagaagaaaaaaacaggaATGTACATAGTGAACCCCTGAGCAGGAAGATGTGGAGGTGACATACCAACAGgCAAACTCTTGTCTGCAGAACAAGATCTGACAAAGATGAGCTACAAGCAAAACCATGTCACAACCTCTGTAGATACTGTATAGTTTGTCAGGAATTGAGTATGTTATATTGGATGAAAATTATCGGAATGATTTCATAGGTTTGTATTTATTCCACAAATCTTGCGCATAAGTTTTGGGCAACCTTGCTAGTATTTTTGTATTGTATCTGATGTCGTCATATTTGACCCTGTTATGAACACAACCAGCGTCAAGCTGATATATTTTTTCAGTCTGTTATATTCAGATTTTTCATTGGCACATATCTCAGATGTTTTGCGTTGCATCATGTTCAACTGCTCAATTGTATAATGCTAAAGATGAATGTTAAATCAAATATGAAAATCAGAGTTCCTTAATTGGTCAGATATTTGAATCGGGAGTTTACAGCAATGATGTATATGAGCCCTGGATTGCAGTTGTTATGTGTTTGCCATTGACAGGCATTGAAGCCACTAGTCGGCCATTTTGGCATTCCCCAGTTGGAGCAGTCCTTCATAAGAATacatggaattctacagtatttcaattaaatgtttcagggacaaaatgacatgtatttaaATATTTGTTTGTTGGGACAGTAACATTGGTGATctcaaaaaaatgtatattttatttgtaagtttagctcacataatacaATGTAAAAGTATGCAATAAGGTGTCTGAAATAGAATAGTTGTGGCAAAAAcaaatttagaaaataataaattAATTTCTGTAgcatccaaaatatatttttttacattgagggagtgccaagatggaggcatggTGGCTTCAATAGAGCCGCCAAAACAGTAttctagtgtgtgtatatataaatcattggctTACAACATGTGCAGTAATAATGTGACATCTTGAGAAATGGAAATAGATGTAGGTCTGAATCTTAACTTGACTTGAGTGCCCATTGATGTCAATGGAAGATTTTCAAAAACTCCAGTTACACGCAcagatctcaagttaggatttggGACTTGAGAATTACACGTGTAAATAGGAGTACATTTCTGAGTACTGAGTTTGTATCATGTTATGTACAATTTAATGGAAGACTTGTAAATAAATGTTGAGAATCAAGAACCTCTTCTTCATGGAAGTATCCTCATTAAACTGAC

Function

NR:

description
mucin-5AC-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037493.1 False 3757 mRNA 0.40 8 44353210 44363948
XR_005037492.1 True 3753 mRNA 0.40 8 44353212 44363943

Neighbor

gene id symbol gene type direction distance location
LOC110496346 NA coding downstream 48734 44298329 ~ 44304476 (-)
trnal-uaa-58 NA coding downstream 68867 44284261 ~ 44284343 (-)
trnal-uaa-57 NA coding downstream 69636 44283492 ~ 44283574 (-)
trnal-uaa-56 NA coding downstream 70400 44282728 ~ 44282810 (-)
trnal-uaa-55 NA coding downstream 71220 44281908 ~ 44281990 (-)
LOC110496350 rpc7l coding upstream 113248 44477196 ~ 44486727 (-)
LOC110496351 LOC106588560 coding upstream 123321 44487269 ~ 44537143 (-)
LOC110496833 LOC106588558 coding upstream 266818 44630766 ~ 44654925 (-)
si:ch73-109i22.2 LOC106588553 coding upstream 330383 44684653 ~ 44703092 (-)
LOC110496357 NA coding upstream 454596 44818544 ~ 44856861 (-)
trnal-uaa-48 NA non-coding downstream 76560 44275605 ~ 44276650 (-)
trnal-uaa-28 NA non-coding downstream 89159 44258600 ~ 44264051 (-)
G1552255 NA non-coding downstream 119441 44233524 ~ 44233769 (-)
G1552243 NA non-coding downstream 120221 44229930 ~ 44232989 (-)
G1552245 NA non-coding downstream 141787 44211086 ~ 44211423 (-)
G1552331 NA non-coding upstream 20290 44384238 ~ 44384491 (-)
G1552348 NA non-coding upstream 46740 44410688 ~ 44411062 (-)
G1552353 NA non-coding upstream 56735 44420683 ~ 44420951 (-)
G1552358 NA non-coding upstream 64010 44427958 ~ 44428171 (-)
G1552360 NA non-coding upstream 70532 44434480 ~ 44434739 (-)
LOC118940987 NA other downstream 720333 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1338091 42895031 ~ 43015119 (-)
G1550202 NA other downstream 1993582 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 2037131 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 2681696 41663436 ~ 41671516 (-)
G1552768 LOC106588550 other upstream 456815 44820763 ~ 44828808 (-)
G1552866 LOC106588536 other upstream 683732 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 701186 45065134 ~ 45073340 (-)
G1553544 NA other upstream 1303413 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 1424151 45788099 ~ 45803048 (-)

Expression


Co-expression Network