LOC110496357


Basic Information

Item Value
gene id LOC110496357
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 44818544 ~ 44856861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469547.2
TACCATAGCTCTGGGCACCACTTAAATGTTGAAAATATTAGCTTCAGGGTTTGAAATGACAACCTTGGCAACTAAACAACAGTAGTAATTTTCCTTATTATTCATCCAAACTACAAAATTATATATTGGGTTCCTGACCCTATAAGGAGTCTATCGACAAGGGAGTAGAATAATGGCGCTCAGCACTAGCCCTGGAAAGACAtctccacccacacacaaacactgagagAAGCAGAGGGATGTGAGTTGTTCGCATGCACAcccagagagagaacatgagCATGGACCTCGTACATCTCCGGAGGAGAGGAGTCACTGATGAGGAAGAGCCCTCGCTCCTGATTGGCTATCTCCCTAATCATGAGGTTCTGCAGGGAGAGGACCGGAGACTTGTcctgaaaagagaaagagagagaaaaataaggGAACACTAGGATGTCTGTCATCAGCAGGACCTGCacatctaaacacacacacacacacacacacacacacgaatccgcacacacgcacacacacaaaataaaaaccTCCTTTAAAACATGAGTAAGCAACATGTTTTGGGGATAGTTCCATCCcctacaatgccttcagaaagtattcacaaccctttaGTTTTTTCCAATGTCGATGTGTTATAGCCTAAATTTagaatggattcaattgagatattttgtcactggcctacacacaataaataccgcgttatgtcaaagtggaattatgtttccccccccaaaaaagctgAGTCAATAACaatttaacccctttgttatggcaagcctaggACAGGAGTAAGCATTTGCTTAACAAATCATAATAATGGTGTTTACCATGTTTGAGTgactaccccacacatacaattatctgtaaggtcagtCAAGCAGTTAATTTCAAGTACAGATTCAACCAAaaataccagggaggttttctcatgcctcgcaaagaagggcacctattggtagatgggtaaacatttaaaaaagcagacactgaatttccctttgagcatggtgaatttAGTAATTAGactt
>TU1776624
GATGCTGTCATAAAACAAAAGAGACAGTTCTATTTctgtcctccacacacacacagggttcaaATTACAGAGGGGTCTAAGGAGTGCAGGGTAGTGGGCACTACCATAATAAATCAGGAATCCCCCATACCATAGCTCTGGGCACCACTTAAATGTTGAAAATATTAGCTTCAGGGTTTGAAATGACAACCTTGGCAACTAAACAACAGTAGTAATTTTCCTTATTATTCATCCAAACTACAAAATTATATATTGGGTTCCTGACCCTATAAGGAGTCTATCGACAAGGGAGTAGAATAATGGCGCTCAGCACTAGCCCTGGAAAGACAtctccacccacacacaaacactgagagAAGCAGAGGGATGTGAGTTGTTCGCATGCACAcccagagagagaacatgaggtgAGAAGGGCAGCGATGTTGTGTGTGTTCCAGAAAGAGACAATTTGTGCCTCATCACAAAATTGATGTGTTATATAAAACCGTGTGTGGGCTTGCATTAGCATTATGGCGAGGAAAGAGGTAAGCCTATCTCTGCTAAAGCACAtttcaatatatttatattaCAGGGGAATATCCCCTGTTGGGAATTGTGTATTTCTTTATATTTCGTATTTTGCTGCTTTTTGTTGTTTGAAGTAATCAcgaaaaaacaggccttattttaggGCATTTTTAacctgccagctcctattagttaGCACCGTGGCACCAACTTGCCTTCCGAACGTTCTATTCCCAGTCTATTTATTGTTCTACGTCACAATGCCTGCTTGGCTATTGTTGGCCCACGTTGCTGGTAgttaaaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469547.2 False 1034 mRNA 0.42 4 44818544 44856734
TU1776624 True 817 lncRNA 0.42 2 44845283 44856861

Neighbor

gene id symbol gene type direction distance location
si:ch73-109i22.2 LOC106588553 coding downstream 115452 44684653 ~ 44703092 (-)
LOC110496833 LOC106588558 coding downstream 163619 44630766 ~ 44654925 (-)
LOC110496351 LOC106588560 coding downstream 281401 44487269 ~ 44537143 (-)
LOC110496350 rpc7l coding downstream 331817 44477196 ~ 44486727 (-)
LOC118936320 LOC106588563 coding downstream 454596 44353210 ~ 44363948 (-)
LOC110496937 LOC106588536 coding upstream 81396 44938130 ~ 44943098 (-)
LOC110496360 LOC106588576 coding upstream 485269 45342003 ~ 45347556 (-)
LOC100499581 LOC106588577 coding upstream 512835 45369569 ~ 45372973 (-)
LOC110496365 LOC106588581 coding upstream 619201 45475935 ~ 45562167 (-)
LOC110496374 LOC106570224 coding upstream 999999 45856733 ~ 45890268 (-)
G1552703 NA non-coding downstream 101940 44708042 ~ 44716604 (-)
G1552702 NA non-coding downstream 110614 44707166 ~ 44707930 (-)
G1552696 NA non-coding downstream 142434 44675802 ~ 44676110 (-)
G1552682 NA non-coding downstream 158332 44659947 ~ 44660212 (-)
G1552760 NA non-coding upstream 10715 44867449 ~ 44868046 (-)
G1552759 NA non-coding upstream 33936 44890670 ~ 44892103 (-)
G1552794 NA non-coding upstream 37604 44894338 ~ 44895008 (-)
G1552801 NA non-coding upstream 49004 44905738 ~ 44906050 (-)
G1552810 NA non-coding upstream 55823 44912557 ~ 44912813 (-)
LOC118940987 NA other downstream 1185667 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 1803425 42895031 ~ 43015119 (-)
G1550202 NA other downstream 2458916 42359148 ~ 42359628 (-)
G1550177 LOC106569881 other downstream 2502465 42315286 ~ 42316079 (-)
LOC110496277 LOC106588347 other downstream 3147030 41663436 ~ 41671516 (-)
G1552866 LOC106588536 other upstream 190946 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other upstream 208400 45065134 ~ 45073340 (-)
G1553544 NA other upstream 810627 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 931365 45788099 ~ 45803048 (-)
G1554091 NA other upstream 1244514 46101248 ~ 46108102 (-)
G1552768 LOC106588550 other downstream 16475 44820763 ~ 44828808 (-)

Expression


Co-expression Network