LOC100499581 (LOC106588577)


Basic Information

Item Value
gene id LOC100499581
gene name LOC106588577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 45369569 ~ 45372973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572216.2
GATCTGGGGTGGCCCCAATCGTTCCTGAAGGACTATAAGACATTTGGGAGGCCCAAGGAAAGATACCGTCCGGCCTAAACTGTCCTGCAATTCAGGTGCCATACTCAGCAGCCATGAAGTTCTCCCTTGCCGCCCTAGTTGTCGTGCTCGCTCTGGCACACGGAAGCCAAGCAGCACAGTCCCCCGAGGTTGAGAAGCTGGCACAGTATTTCCAGGATCTGTCAGCTCAGCTGACCTCCACCACTCAGGAGCTAGTGCAGAAGATCCAGTCAGAAACCTTTGTAGAGGATGGAAAGGCCCAGCTGCAGCAGATCCAGGCCCAGCTGGCACCCCTGGCCGACAATATGCAGGCCCAGCTGAAGCCCCTGGCTGAGAACATGCAGGCCCAGCTTAAGCCTCTGGTCGACAACTTCCAGGCTCAGATAGAAGACCTCTTCCGCAAGCTGATGGACCAGACCAAGTCCCTCGGCCAATAAAGCAGTTATTTTTCAATAACCTTATCACCTCGGACCGAATCAACAGCTCCATGGGCTTACAATCAGTCAAAACCAATCCAACAAGAACCCGACAAGCTTCCAACCCTCTGCttaagtcaatcaatcaatcaatcaatcaaatgtatttgtaaagccCCTctaacatcagctgatgtcacaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcatgtgtagaagcatggtggctaggaaaaactccctagaaagtatTTTTGTGCCAAGAAGAATGTGCCAAGACGAATGTTGTTGACATGCAAAGACAGACAGTAGTAATCCAGAACATCATTAAAACTTGGAAACTGGTTCTGTGGCATCTATTGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572216.2 True 861 mRNA 0.49 4 45369569 45372973

Neighbor

gene id symbol gene type direction distance location
LOC110496360 LOC106588576 coding downstream 22013 45342003 ~ 45347556 (-)
LOC110496937 LOC106588536 coding downstream 426471 44938130 ~ 44943098 (-)
LOC110496357 NA coding downstream 512835 44818544 ~ 44856861 (-)
si:ch73-109i22.2 LOC106588553 coding downstream 666477 44684653 ~ 44703092 (-)
LOC110496833 LOC106588558 coding downstream 714644 44630766 ~ 44654925 (-)
LOC110496365 LOC106588581 coding upstream 102962 45475935 ~ 45562167 (-)
LOC110496374 LOC106570224 coding upstream 483760 45856733 ~ 45890268 (-)
LOC110496375 LOC106588593 coding upstream 538883 45911856 ~ 46028798 (-)
LOC110496377 LOC106588592 coding upstream 666678 46039651 ~ 46056951 (-)
LOC110496378 LOC106588595 coding upstream 688071 46061044 ~ 46074477 (-)
G1553097 NA non-coding downstream 104650 45187074 ~ 45264919 (-)
G1553094 NA non-coding downstream 178028 45182883 ~ 45191541 (-)
G1553083 NA non-coding downstream 204636 45164449 ~ 45164933 (-)
G1552947 NA non-coding downstream 215859 45153412 ~ 45153710 (-)
G1552946 NA non-coding downstream 216324 45153009 ~ 45153245 (-)
G1553326 NA non-coding upstream 26721 45399694 ~ 45403664 (-)
G1553378 NA non-coding upstream 85082 45458055 ~ 45458425 (-)
G1553380 NA non-coding upstream 87085 45460058 ~ 45460346 (-)
G1553473 NA non-coding upstream 220813 45593786 ~ 45594054 (-)
G1552866 LOC106588536 other downstream 281783 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other downstream 296229 45065134 ~ 45073340 (-)
G1552768 LOC106588550 other downstream 540761 44820763 ~ 44828808 (-)
LOC118940987 NA other downstream 1736692 43624763 ~ 43668196 (-)
LOC118936491 LOC106588302 other downstream 2354450 42895031 ~ 43015119 (-)
G1553544 NA other upstream 294388 45667361 ~ 45667740 (-)
G1553693 LOC106588587 other upstream 415126 45788099 ~ 45803048 (-)
G1554091 NA other upstream 728275 46101248 ~ 46108102 (-)
G1555168 NA other upstream 1539004 46911977 ~ 46912915 (-)
G1555543 NA other upstream 2170587 47543208 ~ 47546614 (-)

Expression


Co-expression Network