LOC110496379 (LOC106588596)


Basic Information

Item Value
gene id LOC110496379
gene name LOC106588596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 46080497 ~ 46142731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572246.2
GCTTGATCGCCACCAGTAGGAGAATAGCGGTCCACTAGCTCTCCATGCGTCGGGGAGGTATCACTGAATAATAACGGACTTGCCGCTTCCAGCCATACACTCGCAGATATACCTTTTTAGTAGCTTACGGGTGTGAACATTTCGACGTTCACTGCTCGGTCTTTTAAACTAGGCAACTGTATTCGATGAATATCGGGGTGGTTTCGCTCAGCAGCTCCTTGCTTGGATAACCTTATCGCTGTGCTGTGTGGATGCTCTGGAAAACGTGTCTCCCTACCATTCCGATCAGAGCTGTCTTGGAAATGAAAGGAAATGATTGAATGGACAGGCAGTGAATGCTAGATGCACAACTCACTGACCTCACACTGTCAACCGCAGAAGAGCAGCTGGATGCATTTACTCGGCCATCGTTAAGTTGACAGGACCATCCTGGATTGTGTACCACCATTTAATTACGGTGTTATTGTTCAGCAGACGTGTCATGGACATACACAAGGATTCCTCATCTATGTGATTTTTGTCTGACCGAACATTTTTTTCTACAGAATGCCAAGGCTTTCCCTTCAAACTATAAGGAACTACTATTCTGGTCAGCTTTTTTACTCTGAGATGTTGTTGTTTTCCAACAGAGTGAAGAGGAGCCTGTAATTGTGATGAGGAAGACAGGGACTGTTTCTGTTCATCAGAGGAACCCGGTATTCAGCCTGTTAGAGCCACGAAATCTCCAGGGGAGGAAATATTCTCAGACATCACTTGGAAATTGGAATTTTCAATAAGTTTTCTCTGTTTTTCCCTTCCTTCCACCTCCCAGACAACTAAGTTTTTAATCTACCACTACACCATGTCTCTATCGAAGTGGAGGAAGATCAGGGCAATTACTGTGTTTTCATGCATTGTAACTTTCACCACGTTCCTCTTCAGTTACACGTTGAGAGATCCCTCTCTGTACTTCTTCAAATACGCCATCCGCAAGTCGGACAGCTTCTTCTCTAAGGGCCAGTGTGGCTGTCGACAGTGTATGACCGAGCTGGAGGACGACCCCTGGTTCACTGAGAGGTTCAACCTGTCTGTCCAACCTCTGATGTCTAGGAGGAACAGCCTGCTGACTGACGACACATACCGCTGGTGGCAGtggttGCAGGCAGAGCAAGAGCCGGCCAACTTCAGCGAGGTGGTGGAGAAGTTGTTCCAGGTCATCCCTGATGCTGACCTTTACATGGATGCGGGCCCTGAGCGCTGTAGGACCTGTGCTGTGGTGGGGAACTCTGGGAACCTTAAGGGCTCCCGTTACGGAGCCCTCATAGACTCCAGTGATGTCGTCATCAGAATGAACATGGCTCCTACCTCTGGCTATGAGGAGGATGTTGGGAGCCGGACCACCCATCACGTCATGTACCCAGAGAGCGCCATAGATCTGGACAACACCACCAGTCTTCTGCTCATCCCCTTCAAGACTCTGGACCTTCAGTGGATCACCAGCGCCTTGACTACAGGCTCCATCAAACACACGTACATTCCTGTCCAGTCCAGGATTAAGGCAAACAAGAACAGGGTGTTGATATACAGCCCGACCTTCTTTAAATATGTCTATGACGCATGGCTGGAGAGTCATGGCCGGTATCCCTCCACTGGCTTCCTCAGCCTATTGTTTTCCATTCATATCTGTGATAAGGTGAGTGTGTACGGGTTCGGAGCGGATCAGTACGGGAACTGGCACCACTACTGGGAAGAGAATCACCAGGGAGGAGCATTCCGCCACACCGGAGTGCATGATGCTGACTTTGAGTACAACGTTACCCTGCTTCTGGCTGACAAACACAAGATCAAGATTTTCAAAGGCTTCTGATGTCTGGAGATGTTACTGGCCTGAGACCATCAAGCCTCTTGAATTAAATTCTGTCGACTCAGAGGTTAACCACTGGGcataaactggttgaatcaacatagtttcaacgtaatttgtcaacgtattgtgacgtggaatctgtGTAAAATTCATTGGATTTGCCAAAAGTaatcaactgttgttttgagggtgaaatttcaaccacaggattttGTCATCATTGTAACCAATGTTCAACATAGACAAagcttgtataaaatatgttaaATTTGTACCTTTTGAAACAATGTCAGATATTCAatgttatatccactatcaggagaaaaaaaaaactatagcTGGGCAGCAACTCCTTCTGGAAAATTCTACAGCTATCTATCGCTATTCCTTTGGTCTCCCATCCTGGGTTTTAACCCAGCCCAACCCTGCTAAGCTTTGATATGTcactgacaaccccccccccccccccaaacaaaaagTGTTTTGTGAACTAACACTCGCACTTTACTTTGTTcccccttactagctctgactttgctgatagctacttcaTTGAGGAtaaatgtacttactatgcctGTGATAGGTGGTtgttccacctagctatcttaagatgagtGCACTAACtatgtcgctctggataacagcttctactaaatgactaaaatgtaaaaatgtacaaGCTAAATAGATTCACTTTTGCTATCGGAAGTCATTCCAAGGGGTAGGTTTAACAAAGCAAATTAAATGGAACCATACTTTATCAATCATATACCATCAATGATGCTATTTAGGCCTagtgtttcaattcaacccaggattcaactaaaaatagacgATTCATATAGGCATAGGGTTTAAAGCTTTGGTTGATTTTAAATGTAATCTAAAAGttaataatgtactgtatatgttggattcatgtctccatcttaaccaaaaatctaagttaaagaataggactaaatccaACTTCATTTAAATTCCAtttacagtttgatttgattttgtcctATTCTTTAAGTTCGATTTTTGGTCGAGTTGGAGAAGTGAATCCAACATCTTGATTactattagatttttttttactttttggggggggattttgCCACCTCTTTCTcattcgatcttgtctcatcgctgcaactccccaatggacTCAGGAGGCGAAGTtcgagtcatgcatcctctgaaacatgacccgccaaacagCGCTTCATAACACCCggccgcttaacccggaagccagccgcatccatgtgttggaggaaacactgttcaactgacgaccgaggtcagcctgcaagcgcccggcccaccacaaggagtcgctagagccagatgagccaagtaaagcccccccggccaaaccctcccttaacccggacgacactgggccaattatgtaccgccctatgggactcccaatcatggtcggttgtgatacagcctgggatcgaacccaggtctgtagtgaagcctctagcactgcgatgcagtgcctcagacagCATAACAATTATTAATGGAATTAAAGCTCGACTAAGTCAGTGGGACATATTAAACTATTCAAGCAGTAGATTAATCTCCTTTAAATGCTGGTTATTTGTTGTGTTaatcaaccaaacacaattcactgttacttttgtaatacagtagCTTAAAGGTAAGGCTAACTTACAGACTAAcgtaacagtatttattcaaatGGGTAACACATCCATAGCCACATTTTGACGCTAATGTAACTATAAATGTCTTATCAATTAAAGAGTGCATGTTCAAGatcacaggtctgtggagatcttcacaattttTATAATGAATGTCTATAATAaacggcattgatcacttgcaccatgtactaTTAATGTAATATATTCTCAACTGAAATCCATGttatttggttgtgctattagaaGAAGAACAGGGATAACACATTaagttgtataaataaacaaaatatctgacattgta
>XM_021572247.2
GCTTGATCGCCACCAGTAGGAGAATAGCGGTCCACTAGCTCTCCATGCGTCGGGGAGGTATCACTGAATAATAACGGACTTGCCGCTTCCAGCCATACACTCGCAGATATACCTTTTTAGTAGCTTACGGGTGTGAACATTTCGACGTTCACTGCTCGGTCTTTTAAACTAGGCAACTGTATTCGATGAATATCGGGGTGGTTTCGCTCAGCAGCTCCTTGCTTGGATAACCTTATCGCTGTGCTGTGTGGATGCTCTGGAAAACGTGTCTCCCTACCATTCCGATCAGAGCTGTCTTGGAAATGAAAAGTGAAGAGGAGCCTGTAATTGTGATGAGGAAGACAGGGACTGTTTCTGTTCATCAGAGGAACCCGGTATTCAGCCTGTTAGAGCCACGAAATCTCCAGGGGAGGAAATATTCTCAGACATCACTTGGAAATTGGAATTTTCAATAAGTTTTCTCTGTTTTTCCCTTCCTTCCACCTCCCAGACAACTAAGTTTTTAATCTACCACTACACCATGTCTCTATCGAAGTGGAGGAAGATCAGGGCAATTACTGTGTTTTCATGCATTGTAACTTTCACCACGTTCCTCTTCAGTTACACGTTGAGAGATCCCTCTCTGTACTTCTTCAAATACGCCATCCGCAAGTCGGACAGCTTCTTCTCTAAGGGCCAGTGTGGCTGTCGACAGTGTATGACCGAGCTGGAGGACGACCCCTGGTTCACTGAGAGGTTCAACCTGTCTGTCCAACCTCTGATGTCTAGGAGGAACAGCCTGCTGACTGACGACACATACCGCTGGTGGCAGtggttGCAGGCAGAGCAAGAGCCGGCCAACTTCAGCGAGGTGGTGGAGAAGTTGTTCCAGGTCATCCCTGATGCTGACCTTTACATGGATGCGGGCCCTGAGCGCTGTAGGACCTGTGCTGTGGTGGGGAACTCTGGGAACCTTAAGGGCTCCCGTTACGGAGCCCTCATAGACTCCAGTGATGTCGTCATCAGAATGAACATGGCTCCTACCTCTGGCTATGAGGAGGATGTTGGGAGCCGGACCACCCATCACGTCATGTACCCAGAGAGCGCCATAGATCTGGACAACACCACCAGTCTTCTGCTCATCCCCTTCAAGACTCTGGACCTTCAGTGGATCACCAGCGCCTTGACTACAGGCTCCATCAAACACACGTACATTCCTGTCCAGTCCAGGATTAAGGCAAACAAGAACAGGGTGTTGATATACAGCCCGACCTTCTTTAAATATGTCTATGACGCATGGCTGGAGAGTCATGGCCGGTATCCCTCCACTGGCTTCCTCAGCCTATTGTTTTCCATTCATATCTGTGATAAGGTGAGTGTGTACGGGTTCGGAGCGGATCAGTACGGGAACTGGCACCACTACTGGGAAGAGAATCACCAGGGAGGAGCATTCCGCCACACCGGAGTGCATGATGCTGACTTTGAGTACAACGTTACCCTGCTTCTGGCTGACAAACACAAGATCAAGATTTTCAAAGGCTTCTGATGTCTGGAGATGTTACTGGCCTGAGACCATCAAGCCTCTTGAATTAAATTCTGTCGACTCAGAGGTTAACCACTGGGcataaactggttgaatcaacatagtttcaacgtaatttgtcaacgtattgtgacgtggaatctgtGTAAAATTCATTGGATTTGCCAAAAGTaatcaactgttgttttgagggtgaaatttcaaccacaggattttGTCATCATTGTAACCAATGTTCAACATAGACAAagcttgtataaaatatgttaaATTTGTACCTTTTGAAACAATGTCAGATATTCAatgttatatccactatcaggagaaaaaaaaaactatagcTGGGCAGCAACTCCTTCTGGAAAATTCTACAGCTATCTATCGCTATTCCTTTGGTCTCCCATCCTGGGTTTTAACCCAGCCCAACCCTGCTAAGCTTTGATATGTcactgacaaccccccccccccccccaaacaaaaagTGTTTTGTGAACTAACACTCGCACTTTACTTTGTTcccccttactagctctgactttgctgatagctacttcaTTGAGGAtaaatgtacttactatgcctGTGATAGGTGGTtgttccacctagctatcttaagatgagtGCACTAACtatgtcgctctggataacagcttctactaaatgactaaaatgtaaaaatgtacaaGCTAAATAGATTCACTTTTGCTATCGGAAGTCATTCCAAGGGGTAGGTTTAACAAAGCAAATTAAATGGAACCATACTTTATCAATCATATACCATCAATGATGCTATTTAGGCCTagtgtttcaattcaacccaggattcaactaaaaatagacgATTCATATAGGCATAGGGTTTAAAGCTTTGGTTGATTTTAAATGTAATCTAAAAGttaataatgtactgtatatgttggattcatgtctccatcttaaccaaaaatctaagttaaagaataggactaaatccaACTTCATTTAAATTCCAtttacagtttgatttgattttgtcctATTCTTTAAGTTCGATTTTTGGTCGAGTTGGAGAAGTGAATCCAACATCTTGATTactattagatttttttttactttttggggggggattttgCCACCTCTTTCTcattcgatcttgtctcatcgctgcaactccccaatggacTCAGGAGGCGAAGTtcgagtcatgcatcctctgaaacatgacccgccaaacagCGCTTCATAACACCCggccgcttaacccggaagccagccgcatccatgtgttggaggaaacactgttcaactgacgaccgaggtcagcctgcaagcgcccggcccaccacaaggagtcgctagagccagatgagccaagtaaagcccccccggccaaaccctcccttaacccggacgacactgggccaattatgtaccgccctatgggactcccaatcatggtcggttgtgatacagcctgggatcgaacccaggtctgtagtgaagcctctagcactgcgatgcagtgcctcagacagCATAACAATTATTAATGGAATTAAAGCTCGACTAAGTCAGTGGGACATATTAAACTATTCAAGCAGTAGATTAATCTCCTTTAAATGCTGGTTATTTGTTGTGTTaatcaaccaaacacaattcactgttacttttgtaatacagtagCTTAAAGGTAAGGCTAACTTACAGACTAAcgtaacagtatttattcaaatGGGTAACACATCCATAGCCACATTTTGACGCTAATGTAACTATAAATGTCTTATCAATTAAAGAGTGCATGTTCAAGatcacaggtctgtggagatcttcacaattttTATAATGAATGTCTATAATAaacggcattgatcacttgcaccatgtactaTTAATGTAATATATTCTCAACTGAAATCCATGttatttggttgtgctattagaaGAAGAACAGGGATAACACATTaagttgtataaataaacaaaatatctgacattgta

Function

NR:

description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

GO: NA

KEGG:

id description
K00780 SIAT4A; beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572246.2 False 3823 mRNA 0.44 7 46080497 46142731
XM_021572247.2 True 3502 mRNA 0.44 7 46080497 46142731

Neighbor

gene id symbol gene type direction distance location
LOC110496378 LOC106588595 coding downstream 6020 46061044 ~ 46074477 (-)
LOC110496377 LOC106588592 coding downstream 23546 46039651 ~ 46056951 (-)
LOC110496375 LOC106588593 coding downstream 51699 45911856 ~ 46028798 (-)
LOC110496374 LOC106570224 coding downstream 190229 45856733 ~ 45890268 (-)
LOC110496365 LOC106588581 coding downstream 518330 45475935 ~ 45562167 (-)
LOC110496382 LOC106588622 coding upstream 434727 46577458 ~ 46640870 (-)
LOC110496383 LOC106588620 coding upstream 529783 46672514 ~ 46756077 (-)
LOC110496384 LOC106588605 coding upstream 636364 46779095 ~ 46822848 (-)
trappc9 trappc9 coding upstream 714730 46857461 ~ 47141015 (-)
LOC110496386 LOC106588618 coding upstream 1005561 47148292 ~ 47153777 (-)
G1554041 NA non-coding downstream 158743 45921443 ~ 45921754 (-)
G1554026 NA non-coding downstream 176959 45903333 ~ 45903538 (-)
G1553990 NA non-coding downstream 228757 45851427 ~ 45851740 (-)
G1553988 NA non-coding downstream 230167 45849984 ~ 45850330 (-)
G1553721 NA non-coding downstream 246546 45833711 ~ 45833951 (-)
G1554172 NA non-coding upstream 75289 46218020 ~ 46218324 (-)
G1554213 NA non-coding upstream 81201 46223932 ~ 46286906 (-)
G1554248 NA non-coding upstream 144236 46286967 ~ 46288146 (-)
G1554252 NA non-coding upstream 150655 46293386 ~ 46293594 (-)
G1554262 NA non-coding upstream 157031 46299762 ~ 46299971 (-)
G1553693 LOC106588587 other downstream 277449 45788099 ~ 45803048 (-)
G1553544 NA other downstream 412757 45667361 ~ 45667740 (-)
G1552866 LOC106588536 other downstream 992711 45047680 ~ 45087786 (-)
G1552875 LOC106588536 other downstream 1007157 45065134 ~ 45073340 (-)
G1552768 LOC106588550 other downstream 1251689 44820763 ~ 44828808 (-)
G1555168 NA other upstream 769246 46911977 ~ 46912915 (-)
G1555543 NA other upstream 1400829 47543208 ~ 47546614 (-)
LOC110496837 LOC106588626 other upstream 1762108 47890580 ~ 47945574 (-)
LOC110496401 LOC106588640 other upstream 1840152 47982726 ~ 47986560 (-)
G1556577 NA other upstream 2213882 48356613 ~ 48356847 (-)

Expression


Co-expression Network